Wall clock time and date at job start Tue Mar 31 2020 13:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 119.99944 * 2 1 4 4 O 1.21588 * 120.00283 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99471 * 180.02562 * 3 2 1 6 6 C 1.39977 * 119.99776 * 185.18010 * 5 3 2 7 7 C 1.38998 * 119.99816 * 213.03164 * 6 5 3 8 8 C 1.38237 * 120.24174 * 180.02562 * 7 6 5 9 9 C 1.38002 * 120.21946 * 359.69339 * 8 7 6 10 10 C 1.39643 * 119.99482 * 0.57640 * 9 8 7 11 11 C 1.47735 * 120.12266 * 179.72600 * 10 9 8 12 12 O 1.21592 * 119.99954 * 220.47486 * 11 10 9 13 13 N 1.34774 * 120.00185 * 40.46881 * 11 10 9 14 14 C 1.36871 * 119.99839 * 357.67666 * 13 11 10 15 15 H 1.08002 * 119.99990 * 52.44738 * 14 13 11 16 16 C 1.39050 * 120.00220 * 232.45519 * 14 13 11 17 17 N 1.31360 * 119.99968 * 198.98198 * 16 14 13 18 18 Si 1.86800 * 120.00078 * 18.97842 * 16 14 13 19 19 H 1.48498 * 109.46948 * 95.07288 * 18 16 14 20 20 H 1.48499 * 109.47167 * 215.07440 * 18 16 14 21 21 H 1.48497 * 109.47084 * 335.07202 * 18 16 14 22 22 C 1.46500 * 120.00191 * 177.68045 * 13 11 10 23 23 C 1.52998 * 109.46960 * 274.56228 * 22 13 11 24 24 O 1.42901 * 109.46911 * 65.96147 * 23 22 13 25 25 C 1.42903 * 113.99852 * 180.02562 * 24 23 22 26 26 C 1.38570 * 119.99598 * 33.05076 * 6 5 3 27 27 H 1.09000 * 109.47304 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47270 * 299.99938 * 1 2 3 29 29 H 1.09002 * 109.47539 * 59.99358 * 1 2 3 30 30 H 0.97006 * 119.99747 * 180.02562 * 2 1 3 31 31 H 0.96995 * 120.00581 * 5.18370 * 5 3 2 32 32 H 1.08001 * 119.88497 * 359.97438 * 7 6 5 33 33 H 1.07992 * 119.89071 * 179.97438 * 8 7 6 34 34 H 1.08006 * 120.00104 * 180.30465 * 9 8 7 35 35 H 0.97006 * 120.00271 * 179.97438 * 17 16 14 36 36 H 1.09005 * 109.46982 * 154.56444 * 22 13 11 37 37 H 1.08997 * 109.47115 * 34.56448 * 22 13 11 38 38 H 1.08995 * 109.47177 * 185.96474 * 23 22 13 39 39 H 1.09009 * 109.47268 * 305.96618 * 23 22 13 40 40 H 1.08997 * 109.47283 * 179.97438 * 25 24 23 41 41 H 1.08997 * 109.47497 * 300.00024 * 25 24 23 42 42 H 1.09004 * 109.47407 * 60.00155 * 25 24 23 43 43 H 1.07999 * 120.11077 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4866 1.1671 -0.0005 6 6 4.1866 2.3743 0.1089 7 6 5.4078 2.5305 -0.5362 8 6 6.1036 3.7204 -0.4311 9 6 5.5874 4.7637 0.3100 10 6 4.3640 4.6153 0.9668 11 6 3.8116 5.7283 1.7659 12 8 3.2722 5.5021 2.8319 13 7 3.9057 6.9943 1.3135 14 6 4.5548 7.2541 0.1368 15 1 4.2841 6.7158 -0.7595 16 6 5.5629 8.2109 0.0954 17 7 5.9275 8.7315 -1.0543 18 14 6.3986 8.7562 1.6745 19 1 7.6425 7.9698 1.8732 20 1 6.7348 10.1998 1.5837 21 1 5.4829 8.5325 2.8219 22 6 3.3133 8.0925 2.0812 23 6 1.8360 8.2353 1.7100 24 8 1.1229 7.0731 2.1378 25 6 -0.2738 7.1048 1.8372 26 6 3.6622 3.4135 0.8608 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.9500 -0.8401 -0.0004 31 1 3.9716 0.3306 -0.0768 32 1 5.8151 1.7191 -1.1211 33 1 7.0522 3.8354 -0.9344 34 1 6.1317 5.6936 0.3858 35 1 6.6305 9.3993 -1.0832 36 1 3.8371 9.0204 1.8513 37 1 3.4014 7.8799 3.1466 38 1 1.4218 9.1165 2.1999 39 1 1.7415 8.3422 0.6293 40 1 -0.7430 6.1877 2.1933 41 1 -0.7321 7.9626 2.3294 42 1 -0.4117 7.1881 0.7591 43 1 2.7138 3.2937 1.3634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909562103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:34 Heat of formation + Delta-G solvation = -81.610069 kcal Electronic energy + Delta-G solvation = -27957.303634 eV Core-core repulsion = 24002.848641 eV Total energy + Delta-G solvation = -3954.454993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72186 -40.86505 -39.26902 -38.45752 -36.72724 -35.77378 -35.68462 -34.00318 -32.24178 -31.09220 -30.25002 -27.42174 -27.21332 -26.85804 -25.02250 -23.60247 -23.33520 -21.86381 -21.10600 -19.75937 -19.48370 -18.25456 -17.63145 -17.40339 -17.12329 -17.03320 -16.64236 -16.38173 -16.13308 -16.10556 -15.63755 -15.47703 -15.30663 -14.95080 -14.56045 -14.33642 -14.10979 -14.04911 -13.68602 -13.44186 -13.37940 -13.05364 -12.91976 -12.74649 -12.57421 -12.47414 -12.23162 -12.00567 -11.75779 -11.50361 -11.21820 -11.07916 -10.61356 -10.43207 -10.20494 -9.75929 -9.47970 -8.96733 -8.45449 -6.18825 0.19372 0.50180 1.27120 1.37021 1.47946 1.60531 1.96093 2.12787 2.25134 2.61970 2.86858 2.95514 3.17875 3.28543 4.04142 4.09732 4.17437 4.26111 4.32385 4.40980 4.43340 4.46828 4.49982 4.54669 4.59784 4.63021 4.64904 4.68853 4.75332 4.90141 4.95962 5.07193 5.30202 5.40182 5.48500 5.55708 5.61446 5.75548 5.97400 6.13408 6.18131 6.27728 6.36574 7.01473 7.01924 7.41332 7.49837 7.85589 8.67206 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.004956 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.691599 B = 5648.486162 C = 7244.249459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.727 5.727 3 C 0.688 3.312 4 O -0.622 6.622 5 N -0.665 5.665 6 C 0.142 3.858 7 C -0.114 4.114 8 C -0.113 4.113 9 C -0.085 4.085 10 C -0.111 4.111 11 C 0.525 3.475 12 O -0.598 6.598 13 N -0.468 5.468 14 C -0.333 4.333 15 H 0.062 0.938 16 C 0.049 3.951 17 N -0.890 5.890 18 Si 0.905 3.095 19 H -0.270 1.270 20 H -0.269 1.269 21 H -0.253 1.253 22 C 0.110 3.890 23 C 0.053 3.947 24 O -0.402 6.402 25 C 0.029 3.971 26 C -0.097 4.097 27 H 0.122 0.878 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.420 0.580 31 H 0.428 0.572 32 H 0.173 0.827 33 H 0.158 0.842 34 H 0.126 0.874 35 H 0.281 0.719 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.042 0.958 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.035 0.965 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.435 -15.781 -0.104 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.384 5.384 3 C 0.388 3.612 4 O -0.501 6.501 5 N -0.316 5.316 6 C 0.047 3.953 7 C -0.134 4.134 8 C -0.131 4.131 9 C -0.104 4.104 10 C -0.115 4.115 11 C 0.316 3.684 12 O -0.483 6.483 13 N -0.190 5.190 14 C -0.461 4.461 15 H 0.080 0.920 16 C -0.157 4.157 17 N -0.525 5.525 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.177 1.177 22 C -0.012 4.012 23 C -0.025 4.025 24 O -0.322 6.322 25 C -0.067 4.067 26 C -0.119 4.119 27 H 0.141 0.859 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.257 0.743 31 H 0.268 0.732 32 H 0.190 0.810 33 H 0.175 0.825 34 H 0.144 0.856 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.141 -15.000 0.413 15.567 hybrid contribution 0.398 0.365 0.260 0.599 sum -3.743 -14.635 0.673 15.121 Atomic orbital electron populations 1.21580 0.77053 1.04436 1.01084 1.44746 1.08319 1.06313 1.79007 1.16357 0.81995 0.84985 0.77892 1.91009 1.68630 1.32439 1.58066 1.42211 1.04318 1.08478 1.76547 1.17286 0.93701 0.86481 0.97801 1.21258 0.93739 0.99302 0.99097 1.21244 1.01124 0.91904 0.98817 1.21677 0.94547 0.99359 0.94821 1.19779 0.97064 0.93868 1.00756 1.18919 0.80084 0.84450 0.84963 1.90599 1.48038 1.85153 1.24470 1.43454 1.49757 1.04353 1.21400 1.18537 1.16732 1.24527 0.86257 0.92031 1.25875 0.95769 0.95283 0.98794 1.69794 1.29423 1.26285 1.27044 0.86437 0.80197 0.78528 0.82079 1.19585 1.19380 1.17659 1.21833 0.92038 0.91140 0.96226 1.22954 0.92498 0.88434 0.98570 1.88115 1.21132 1.41640 1.81267 1.22819 0.81559 1.02739 0.99578 1.20916 0.99468 0.92900 0.98576 0.85927 0.94035 0.93573 0.74326 0.73208 0.80979 0.82475 0.85646 0.90889 0.89242 0.91767 0.90163 0.93981 0.89915 0.91963 0.94609 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 10.70 127.77 1.37 3.04 16 2 N -0.73 -13.03 5.72 -500.19 -2.86 -15.89 16 3 C 0.69 20.31 8.30 179.05 1.49 21.80 16 4 O -0.62 -26.51 14.00 -3.99 -0.06 -26.56 16 5 N -0.67 -16.49 5.35 -317.27 -1.70 -18.18 16 6 C 0.14 4.77 6.28 38.10 0.24 5.01 16 7 C -0.11 -3.14 9.95 22.45 0.22 -2.91 16 8 C -0.11 -3.67 10.02 22.21 0.22 -3.44 16 9 C -0.08 -3.66 8.14 22.55 0.18 -3.48 16 10 C -0.11 -5.41 5.35 -20.11 -0.11 -5.52 16 11 C 0.53 28.51 6.87 86.75 0.60 29.10 16 12 O -0.60 -34.88 15.46 10.03 0.16 -34.73 16 13 N -0.47 -24.49 1.86 -638.93 -1.19 -25.68 16 14 C -0.33 -17.97 6.41 84.10 0.54 -17.44 16 15 H 0.06 3.74 7.59 -2.91 -0.02 3.72 16 16 C 0.05 2.52 4.81 84.96 0.41 2.93 16 17 N -0.89 -48.20 13.95 21.68 0.30 -47.89 16 18 Si 0.90 40.46 26.54 68.60 1.82 42.28 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 21 H -0.25 -11.32 5.43 99.48 0.54 -10.78 16 22 C 0.11 5.17 3.89 86.38 0.34 5.51 16 23 C 0.05 2.22 6.28 71.98 0.45 2.68 16 24 O -0.40 -18.46 9.10 -134.95 -1.23 -19.69 16 25 C 0.03 1.02 11.01 113.37 1.25 2.27 16 26 C -0.10 -4.36 8.25 22.67 0.19 -4.17 16 27 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.42 3.58 8.85 -92.70 -0.82 2.76 16 31 H 0.43 5.84 8.83 -92.71 -0.82 5.02 16 32 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 34 H 0.13 5.91 5.94 -2.91 -0.02 5.89 16 35 H 0.28 14.10 8.31 -92.70 -0.77 13.33 16 36 H 0.09 3.93 5.36 -2.38 -0.01 3.92 16 37 H 0.06 3.08 7.41 -2.39 -0.02 3.06 16 38 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.10 5.25 6.38 -2.91 -0.02 5.24 16 Total: -1.00 -83.15 357.84 1.88 -81.27 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.75 Total: 29.71 kcal Atomic # 6 Polarization: 27.98 SS G_CDS: 7.38 Total: 35.37 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -5.44 Total: -107.64 kcal Atomic # 8 Polarization: -79.85 SS G_CDS: -1.13 Total: -80.98 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 1.82 Total: 42.28 kcal Total: -83.15 1.88 -81.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909562103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.338 kcal (2) G-P(sol) polarization free energy of solvation -83.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds