Wall clock time and date at job start Tue Mar 31 2020 13:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35540 * 117.00085 * 2 1 4 4 C 1.39192 * 120.44605 * 179.97438 * 3 2 1 5 5 C 1.39193 * 118.41347 * 180.02562 * 4 3 2 6 6 O 1.35550 * 120.44459 * 179.97438 * 5 4 3 7 7 C 1.42896 * 117.00074 * 180.02562 * 6 5 4 8 8 N 1.32741 * 119.11383 * 0.02562 * 5 4 3 9 9 C 1.32423 * 120.81373 * 359.97438 * 8 5 4 10 10 C 1.48547 * 119.13653 * 180.02562 * 9 8 5 11 11 O 1.21479 * 119.99466 * 324.52431 * 10 9 8 12 12 N 1.34771 * 120.00548 * 144.52034 * 10 9 8 13 13 C 1.46928 * 120.62939 * 354.41716 * 12 10 9 14 14 C 1.53195 * 108.77646 * 233.58579 * 13 12 10 15 15 C 1.53041 * 109.30865 * 305.36283 * 14 13 12 16 16 C 1.53038 * 109.53760 * 61.36438 * 15 14 13 17 17 H 1.09000 * 109.49744 * 58.62096 * 16 15 14 18 18 C 1.50705 * 109.49563 * 178.67990 * 16 15 14 19 19 H 1.08000 * 119.99859 * 359.97438 * 18 16 15 20 20 C 1.37877 * 120.00043 * 179.97438 * 18 16 15 21 21 N 1.31515 * 120.00023 * 179.97438 * 20 18 16 22 22 Si 1.86803 * 119.99812 * 0.27837 * 20 18 16 23 23 H 1.48498 * 109.46889 * 269.72107 * 22 20 18 24 24 H 1.48495 * 109.47170 * 29.72383 * 22 20 18 25 25 H 1.48501 * 109.47124 * 149.72472 * 22 20 18 26 26 C 1.46926 * 120.63221 * 174.39063 * 12 10 9 27 27 N 1.32428 * 121.73488 * 0.28164 * 9 8 5 28 28 H 1.08996 * 109.47093 * 299.99770 * 1 2 3 29 29 H 1.08998 * 109.47148 * 59.99779 * 1 2 3 30 30 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.79250 * 359.97438 * 4 3 2 32 32 H 1.08999 * 109.46949 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47423 * 299.99652 * 7 6 5 34 34 H 1.08995 * 109.47449 * 60.00241 * 7 6 5 35 35 H 1.09001 * 109.58918 * 113.79260 * 13 12 10 36 36 H 1.09000 * 109.58422 * 353.36797 * 13 12 10 37 37 H 1.09001 * 109.49767 * 185.40778 * 14 13 12 38 38 H 1.09006 * 109.51907 * 65.32872 * 14 13 12 39 39 H 1.09000 * 109.46188 * 301.34238 * 15 14 13 40 40 H 1.09000 * 109.45817 * 181.38352 * 15 14 13 41 41 H 0.96996 * 119.99777 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.58978 * 6.62772 * 26 12 10 43 43 H 1.09000 * 109.58815 * 246.19867 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4338 1.2913 0.0005 5 6 4.0213 2.5532 0.0011 6 8 5.3706 2.6825 0.0021 7 6 5.8949 4.0118 0.0032 8 7 3.2426 3.6282 0.0016 9 6 1.9237 3.5104 0.0010 10 6 1.0878 4.7384 0.0010 11 8 1.4542 5.7223 0.6120 12 7 -0.0768 4.7609 -0.6768 13 6 -0.4750 3.6246 -1.5188 14 6 -0.7945 4.1412 -2.9252 15 6 -1.8438 5.2513 -2.8303 16 6 -1.2867 6.4128 -2.0040 17 1 -0.3752 6.7868 -2.4704 18 6 -2.3083 7.5188 -1.9384 19 1 -3.2598 7.4052 -2.4365 20 6 -2.0282 8.6756 -1.2424 21 7 -2.9196 9.6409 -1.1856 22 14 -0.3794 8.8751 -0.3874 23 1 -0.4780 8.3642 1.0034 24 1 0.6565 8.1077 -1.1244 25 1 -0.0059 10.3122 -0.3615 26 6 -0.9727 5.9220 -0.5873 27 7 1.3301 2.3266 0.0056 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0414 0.3985 0.0014 32 1 6.9842 3.9727 0.0044 33 1 5.5510 4.5388 -0.8868 34 1 5.5497 4.5379 0.8931 35 1 -1.3588 3.1478 -1.0951 36 1 0.3417 2.9046 -1.5709 37 1 -1.1831 3.3243 -3.5333 38 1 0.1125 4.5361 -3.3830 39 1 -2.7418 4.8622 -2.3505 40 1 -2.0910 5.6038 -3.8317 41 1 -2.7226 10.4546 -0.6956 42 1 -0.4846 6.7177 -0.0247 43 1 -1.8972 5.6326 -0.0877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912292181.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:24 Heat of formation + Delta-G solvation = -37.291375 kcal Electronic energy + Delta-G solvation = -28160.566474 eV Core-core repulsion = 24208.033283 eV Total energy + Delta-G solvation = -3952.533190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.81952 -39.73114 -39.47871 -37.99941 -36.98747 -33.69923 -32.89272 -32.25045 -31.85102 -30.52223 -28.29062 -27.38239 -26.23914 -25.20772 -24.10083 -23.41437 -22.05557 -20.80714 -19.36011 -18.87047 -18.35508 -17.19242 -16.87312 -16.77507 -16.53404 -16.04136 -15.90319 -15.80296 -15.00070 -14.91788 -14.42916 -14.12531 -14.03451 -13.84055 -13.65682 -13.06542 -12.88030 -12.52619 -12.44484 -12.22447 -12.21363 -12.11716 -11.68617 -11.43299 -11.15066 -11.08414 -10.62767 -10.46200 -10.17898 -9.96361 -9.89232 -9.77813 -9.70405 -9.31924 -9.21744 -9.12706 -8.62165 -8.16336 -6.11774 -4.13739 0.34157 0.87782 2.14250 2.58149 2.81628 3.03503 3.37441 3.45503 3.49112 3.58376 3.83641 3.99155 4.41712 4.55574 4.77689 4.94766 4.98951 5.02539 5.04176 5.09991 5.15508 5.20089 5.24162 5.35967 5.37999 5.50789 5.55227 5.86170 6.01225 6.05771 6.12940 6.37981 6.40366 6.46380 6.56964 6.62572 6.70165 6.77169 6.82244 7.10848 7.39991 7.53542 7.68929 7.72214 8.27934 8.47366 8.91275 9.49636 11.00023 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.004501 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.517264 B = 6219.922445 C = 7529.502937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.294 6.294 3 C 0.383 3.617 4 C -0.256 4.256 5 C 0.386 3.614 6 O -0.295 6.295 7 C 0.034 3.966 8 N -0.548 5.548 9 C 0.379 3.621 10 C 0.577 3.423 11 O -0.510 6.510 12 N -0.581 5.581 13 C 0.110 3.890 14 C -0.140 4.140 15 C -0.100 4.100 16 C 0.004 3.996 17 H 0.032 0.968 18 C -0.516 4.516 19 H 0.079 0.921 20 C 0.074 3.926 21 N -0.895 5.895 22 Si 0.875 3.125 23 H -0.273 1.273 24 H -0.261 1.261 25 H -0.294 1.294 26 C 0.103 3.897 27 N -0.561 5.561 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.162 0.838 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.265 0.735 42 H 0.080 0.920 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.678 -20.609 0.848 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.199 6.199 3 C 0.199 3.801 4 C -0.280 4.280 5 C 0.201 3.799 6 O -0.199 6.199 7 C -0.060 4.060 8 N -0.283 5.283 9 C 0.108 3.892 10 C 0.359 3.641 11 O -0.383 6.383 12 N -0.313 5.313 13 C -0.013 4.013 14 C -0.178 4.178 15 C -0.138 4.138 16 C -0.015 4.015 17 H 0.050 0.950 18 C -0.554 4.554 19 H 0.097 0.903 20 C -0.129 4.129 21 N -0.532 5.532 22 Si 0.705 3.295 23 H -0.199 1.199 24 H -0.185 1.185 25 H -0.221 1.221 26 C -0.016 4.016 27 N -0.299 5.299 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.180 0.820 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.645 -19.588 1.258 22.823 hybrid contribution 1.158 -0.267 0.589 1.327 sum 12.803 -19.855 1.847 23.697 Atomic orbital electron populations 1.23086 0.75866 1.03711 1.03448 1.86234 1.23908 1.23045 1.86663 1.19625 0.88523 0.84938 0.87025 1.20737 0.92762 0.98230 1.16291 1.19604 0.84930 0.88448 0.86886 1.86221 1.14751 1.32348 1.86586 1.23063 0.98823 0.80477 1.03658 1.67975 1.06157 1.32569 1.21586 1.22447 0.86776 0.90976 0.88995 1.17315 0.80958 0.84576 0.81242 1.90820 1.70446 1.33003 1.43981 1.48257 1.18586 1.20079 1.44410 1.21973 1.01107 0.87767 0.90484 1.22059 1.00601 0.99502 0.95651 1.21444 0.96837 0.94755 1.00720 1.19505 0.97669 0.94152 0.90193 0.94993 1.20936 1.02313 0.98294 1.33879 0.90342 1.25038 0.96482 0.95653 0.95699 1.69886 1.34624 1.06799 1.41900 0.87044 0.84980 0.76567 0.80944 1.19911 1.18549 1.22149 1.22785 0.91425 0.85455 1.01966 1.68317 1.40524 0.98177 1.22836 0.91541 0.91416 0.87919 0.82014 0.87904 0.91503 0.91415 0.91037 0.89716 0.91532 0.92222 0.92331 0.92117 0.92467 0.90212 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.41 101.05 1.05 1.31 16 2 O -0.29 -2.96 10.49 -18.31 -0.19 -3.15 16 3 C 0.38 4.61 7.52 -16.80 -0.13 4.49 16 4 C -0.26 -2.91 10.09 -38.87 -0.39 -3.30 16 5 C 0.39 5.10 7.52 -16.80 -0.13 4.97 16 6 O -0.29 -3.38 10.49 -18.35 -0.19 -3.58 16 7 C 0.03 0.33 10.41 101.05 1.05 1.38 16 8 N -0.55 -8.85 9.23 -11.24 -0.10 -8.95 16 9 C 0.38 6.37 6.75 -157.13 -1.06 5.31 16 10 C 0.58 11.63 7.59 -12.01 -0.09 11.54 16 11 O -0.51 -12.10 16.46 5.38 0.09 -12.01 16 12 N -0.58 -11.16 2.97 -173.62 -0.52 -11.67 16 13 C 0.11 1.64 5.81 -3.71 -0.02 1.62 16 14 C -0.14 -2.10 6.08 -26.61 -0.16 -2.26 16 15 C -0.10 -1.84 5.11 -26.69 -0.14 -1.98 16 16 C 0.00 0.10 1.84 -91.65 -0.17 -0.07 16 17 H 0.03 0.79 7.18 -51.93 -0.37 0.42 16 18 C -0.52 -14.11 9.14 -34.44 -0.31 -14.43 16 19 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 20 C 0.07 2.14 5.45 -17.82 -0.10 2.04 16 21 N -0.89 -27.19 13.96 55.43 0.77 -26.41 16 22 Si 0.88 23.09 24.33 -169.99 -4.14 18.96 16 23 H -0.27 -7.23 6.92 56.52 0.39 -6.84 16 24 H -0.26 -6.91 6.52 56.52 0.37 -6.54 16 25 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 26 C 0.10 2.30 5.13 -3.71 -0.02 2.28 16 27 N -0.56 -7.90 6.42 -11.24 -0.07 -7.97 16 28 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 29 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.17 4.97 -51.93 -0.26 0.92 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.08 2.00 2.35 -51.93 -0.12 1.88 16 43 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 350.20 15.07 5.28 5.28 Total: -1.00 -33.49 350.20 -5.53 -39.02 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -5.84 Total: -2.40 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -0.61 Total: 12.90 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.08 Total: -55.01 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.30 Total: -18.74 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.14 Total: 18.96 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.49 -5.53 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912292181.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.727 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds