Wall clock time and date at job start Tue Mar 31 2020 13:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35540 * 117.00085 * 2 1 4 4 C 1.39192 * 120.44605 * 179.97438 * 3 2 1 5 5 C 1.39193 * 118.41347 * 180.02562 * 4 3 2 6 6 O 1.35550 * 120.44459 * 179.97438 * 5 4 3 7 7 C 1.42896 * 117.00074 * 180.02562 * 6 5 4 8 8 N 1.32741 * 119.11383 * 0.02562 * 5 4 3 9 9 C 1.32423 * 120.81373 * 359.97438 * 8 5 4 10 10 C 1.48547 * 119.13653 * 180.02562 * 9 8 5 11 11 O 1.21479 * 119.99466 * 324.52431 * 10 9 8 12 12 N 1.34771 * 120.00548 * 144.52034 * 10 9 8 13 13 C 1.46928 * 120.62939 * 354.41716 * 12 10 9 14 14 C 1.53195 * 108.77646 * 233.58579 * 13 12 10 15 15 C 1.53041 * 109.30865 * 305.36283 * 14 13 12 16 16 C 1.53038 * 109.53760 * 61.36438 * 15 14 13 17 17 H 1.09000 * 109.49744 * 58.62096 * 16 15 14 18 18 C 1.50705 * 109.49563 * 178.67990 * 16 15 14 19 19 H 1.08000 * 119.99859 * 359.97438 * 18 16 15 20 20 C 1.37877 * 120.00043 * 179.97438 * 18 16 15 21 21 N 1.31515 * 120.00023 * 179.97438 * 20 18 16 22 22 Si 1.86803 * 119.99812 * 0.27837 * 20 18 16 23 23 H 1.48498 * 109.46889 * 269.72107 * 22 20 18 24 24 H 1.48495 * 109.47170 * 29.72383 * 22 20 18 25 25 H 1.48501 * 109.47124 * 149.72472 * 22 20 18 26 26 C 1.46926 * 120.63221 * 174.39063 * 12 10 9 27 27 N 1.32428 * 121.73488 * 0.28164 * 9 8 5 28 28 H 1.08996 * 109.47093 * 299.99770 * 1 2 3 29 29 H 1.08998 * 109.47148 * 59.99779 * 1 2 3 30 30 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.79250 * 359.97438 * 4 3 2 32 32 H 1.08999 * 109.46949 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47423 * 299.99652 * 7 6 5 34 34 H 1.08995 * 109.47449 * 60.00241 * 7 6 5 35 35 H 1.09001 * 109.58918 * 113.79260 * 13 12 10 36 36 H 1.09000 * 109.58422 * 353.36797 * 13 12 10 37 37 H 1.09001 * 109.49767 * 185.40778 * 14 13 12 38 38 H 1.09006 * 109.51907 * 65.32872 * 14 13 12 39 39 H 1.09000 * 109.46188 * 301.34238 * 15 14 13 40 40 H 1.09000 * 109.45817 * 181.38352 * 15 14 13 41 41 H 0.96996 * 119.99777 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.58978 * 6.62772 * 26 12 10 43 43 H 1.09000 * 109.58815 * 246.19867 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4338 1.2913 0.0005 5 6 4.0213 2.5532 0.0011 6 8 5.3706 2.6825 0.0021 7 6 5.8949 4.0118 0.0032 8 7 3.2426 3.6282 0.0016 9 6 1.9237 3.5104 0.0010 10 6 1.0878 4.7384 0.0010 11 8 1.4542 5.7223 0.6120 12 7 -0.0768 4.7609 -0.6768 13 6 -0.4750 3.6246 -1.5188 14 6 -0.7945 4.1412 -2.9252 15 6 -1.8438 5.2513 -2.8303 16 6 -1.2867 6.4128 -2.0040 17 1 -0.3752 6.7868 -2.4704 18 6 -2.3083 7.5188 -1.9384 19 1 -3.2598 7.4052 -2.4365 20 6 -2.0282 8.6756 -1.2424 21 7 -2.9196 9.6409 -1.1856 22 14 -0.3794 8.8751 -0.3874 23 1 -0.4780 8.3642 1.0034 24 1 0.6565 8.1077 -1.1244 25 1 -0.0059 10.3122 -0.3615 26 6 -0.9727 5.9220 -0.5873 27 7 1.3301 2.3266 0.0056 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0414 0.3985 0.0014 32 1 6.9842 3.9727 0.0044 33 1 5.5510 4.5388 -0.8868 34 1 5.5497 4.5379 0.8931 35 1 -1.3588 3.1478 -1.0951 36 1 0.3417 2.9046 -1.5709 37 1 -1.1831 3.3243 -3.5333 38 1 0.1125 4.5361 -3.3830 39 1 -2.7418 4.8622 -2.3505 40 1 -2.0910 5.6038 -3.8317 41 1 -2.7226 10.4546 -0.6956 42 1 -0.4846 6.7177 -0.0247 43 1 -1.8972 5.6326 -0.0877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912292181.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:23 Heat of formation + Delta-G solvation = -63.816793 kcal Electronic energy + Delta-G solvation = -28161.716702 eV Core-core repulsion = 24208.033283 eV Total energy + Delta-G solvation = -3953.683419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.88399 -41.15750 -40.31935 -39.03888 -38.49417 -35.46623 -34.17729 -33.67778 -33.08227 -32.21101 -29.04109 -28.37822 -27.41616 -26.95269 -25.48710 -24.36007 -23.61134 -22.18961 -20.82000 -19.90798 -19.54020 -18.91453 -18.43387 -17.74537 -17.61268 -17.32569 -16.85847 -16.76773 -16.51420 -16.15296 -15.82200 -15.52426 -15.21488 -15.16405 -14.99764 -14.90366 -14.45277 -14.13051 -13.78634 -13.26590 -13.13915 -13.00540 -12.89831 -12.83401 -12.46738 -12.39231 -12.35555 -12.13879 -11.89832 -11.63420 -11.41680 -11.09836 -11.08326 -10.97787 -10.81604 -10.70214 -10.20915 -9.74165 -8.39183 -6.40780 -0.76665 -0.10681 1.18268 1.22573 1.26095 1.29695 1.42435 1.54112 2.09401 2.20749 2.40134 2.65853 2.90007 2.98101 3.49484 3.84180 3.87870 4.02246 4.10068 4.12735 4.30523 4.33469 4.39744 4.41431 4.45041 4.47263 4.48585 4.57139 4.70310 4.72135 4.85330 4.86149 4.94196 5.07748 5.17229 5.29880 5.40939 5.50565 5.60165 5.65509 5.72802 5.94047 6.14785 6.25466 6.52775 6.68253 6.80963 7.25061 8.76670 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.004501 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.517264 B = 6219.922445 C = 7529.502937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.288 6.288 3 C 0.382 3.618 4 C -0.235 4.235 5 C 0.374 3.626 6 O -0.291 6.291 7 C 0.032 3.968 8 N -0.573 5.573 9 C 0.366 3.634 10 C 0.572 3.428 11 O -0.560 6.560 12 N -0.581 5.581 13 C 0.107 3.893 14 C -0.130 4.130 15 C -0.096 4.096 16 C 0.003 3.997 17 H 0.013 0.987 18 C -0.508 4.508 19 H 0.056 0.944 20 C 0.034 3.966 21 N -0.935 5.935 22 Si 0.928 3.072 23 H -0.279 1.279 24 H -0.269 1.269 25 H -0.292 1.292 26 C 0.109 3.891 27 N -0.556 5.556 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.135 0.865 31 H 0.194 0.806 32 H 0.140 0.860 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.267 0.733 42 H 0.050 0.950 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.769 -24.553 0.293 27.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.192 6.192 3 C 0.198 3.802 4 C -0.258 4.258 5 C 0.191 3.809 6 O -0.195 6.195 7 C -0.062 4.062 8 N -0.308 5.308 9 C 0.094 3.906 10 C 0.356 3.644 11 O -0.436 6.436 12 N -0.312 5.312 13 C -0.014 4.014 14 C -0.168 4.168 15 C -0.133 4.133 16 C -0.016 4.016 17 H 0.031 0.969 18 C -0.547 4.547 19 H 0.074 0.926 20 C -0.165 4.165 21 N -0.575 5.575 22 Si 0.757 3.243 23 H -0.206 1.206 24 H -0.194 1.194 25 H -0.220 1.220 26 C -0.012 4.012 27 N -0.294 5.294 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.153 0.847 31 H 0.211 0.789 32 H 0.158 0.842 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.740 -23.597 0.677 26.825 hybrid contribution 0.814 0.820 0.731 1.367 sum 13.553 -22.777 1.408 26.541 Atomic orbital electron populations 1.23381 0.74352 1.05854 1.03285 1.86282 1.25330 1.21412 1.86162 1.19793 0.88921 0.84941 0.86587 1.21070 0.92840 0.98497 1.13427 1.19857 0.85368 0.88468 0.87212 1.86245 1.13742 1.33098 1.86387 1.23231 1.00856 0.79655 1.02449 1.67821 1.06249 1.34516 1.22233 1.21553 0.86667 0.90462 0.91881 1.17781 0.81060 0.85248 0.80304 1.90775 1.71665 1.35225 1.45961 1.48258 1.18043 1.20131 1.44803 1.22295 1.02689 0.86596 0.89788 1.22018 0.99096 0.99429 0.96274 1.21376 0.98142 0.94165 0.99662 1.19447 0.95714 0.94835 0.91634 0.96906 1.21269 1.02185 0.99298 1.31908 0.92569 1.25553 0.98360 0.95907 0.96727 1.69969 1.36159 1.07610 1.43739 0.86218 0.82293 0.76030 0.79720 1.20612 1.19396 1.21974 1.22341 0.91982 0.86230 1.00639 1.68188 1.40650 0.97881 1.22668 0.92245 0.90999 0.84739 0.78851 0.84183 0.92558 0.92791 0.88633 0.88054 0.87108 0.93104 0.91407 0.92198 0.92318 0.93215 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.41 113.37 1.18 1.46 16 2 O -0.29 -4.63 10.49 -88.45 -0.93 -5.56 16 3 C 0.38 7.95 7.52 84.78 0.64 8.59 16 4 C -0.23 -4.55 10.09 22.73 0.23 -4.32 16 5 C 0.37 9.18 7.52 84.79 0.64 9.82 16 6 O -0.29 -6.08 10.49 -88.56 -0.93 -7.01 16 7 C 0.03 0.58 10.41 113.37 1.18 1.76 16 8 N -0.57 -18.12 9.23 -302.16 -2.79 -20.91 16 9 C 0.37 11.97 6.75 137.71 0.93 12.90 16 10 C 0.57 23.16 7.59 87.00 0.66 23.82 16 11 O -0.56 -27.47 16.46 -3.65 -0.06 -27.53 16 12 N -0.58 -21.90 2.97 -821.51 -2.44 -24.35 16 13 C 0.11 2.90 5.81 86.36 0.50 3.40 16 14 C -0.13 -3.48 6.08 30.67 0.19 -3.30 16 15 C -0.10 -3.37 5.11 30.62 0.16 -3.21 16 16 C 0.00 0.15 1.84 -11.46 -0.02 0.13 16 17 H 0.01 0.64 7.18 -2.39 -0.02 0.63 16 18 C -0.51 -28.35 9.14 25.60 0.23 -28.11 16 19 H 0.06 3.34 7.99 -2.91 -0.02 3.31 16 20 C 0.03 1.98 5.45 84.65 0.46 2.45 16 21 N -0.93 -58.32 13.96 21.45 0.30 -58.02 16 22 Si 0.93 49.86 24.33 68.60 1.67 51.53 16 23 H -0.28 -15.15 6.92 99.48 0.69 -14.46 16 24 H -0.27 -14.61 6.52 99.48 0.65 -13.96 16 25 H -0.29 -15.39 7.11 99.48 0.71 -14.69 16 26 C 0.11 4.90 5.13 86.36 0.44 5.34 16 27 N -0.56 -14.35 6.42 -302.17 -1.94 -16.29 16 28 H 0.06 0.78 8.11 -2.39 -0.02 0.76 16 29 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 30 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.19 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 34 H 0.05 1.12 8.12 -2.39 -0.02 1.10 16 35 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.10 2.47 4.97 -2.39 -0.01 2.46 16 37 H 0.11 2.08 8.14 -2.39 -0.02 2.07 16 38 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.05 2.55 2.35 -2.39 -0.01 2.55 16 43 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -76.17 350.20 1.26 -74.92 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: 0.96 Total: 2.50 kcal Atomic # 6 Polarization: 23.31 SS G_CDS: 7.42 Total: 30.72 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -6.87 Total: -119.57 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.92 Total: -40.10 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 1.67 Total: 51.53 kcal Total: -76.17 1.26 -74.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912292181.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.098 kcal (2) G-P(sol) polarization free energy of solvation -76.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds