Wall clock time and date at job start Tue Mar 31 2020 12:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47302 * 2 1 4 4 C 1.46497 * 120.00155 * 270.00297 * 3 2 1 5 5 C 1.50701 * 109.47184 * 269.99835 * 4 3 2 6 6 H 1.08002 * 119.99726 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99885 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00189 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99576 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47565 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47122 * 120.00742 * 9 7 5 12 12 H 1.48507 * 109.47131 * 240.00160 * 9 7 5 13 13 C 1.34781 * 119.99938 * 90.00236 * 3 2 1 14 14 O 1.21281 * 119.99794 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99713 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.46675 * 179.97438 * 15 13 3 17 17 C 1.34736 * 116.99879 * 180.02562 * 16 15 13 18 18 O 1.21483 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.47582 * 119.99749 * 180.02562 * 17 16 15 20 20 C 1.41554 * 126.52025 * 180.02562 * 19 17 16 21 21 C 1.35346 * 105.50008 * 180.02562 * 20 19 17 22 22 C 1.50701 * 126.37811 * 180.02562 * 21 20 19 23 23 C 1.53001 * 117.51956 * 146.27832 * 22 21 20 24 24 C 1.52999 * 60.00190 * 107.47765 * 23 22 21 25 25 N 1.35044 * 107.24200 * 0.25702 * 21 20 19 26 26 H 0.96998 * 124.88135 * 179.74074 * 25 21 20 27 27 N 1.28468 * 110.24325 * 359.55395 * 25 21 20 28 28 H 1.09000 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46786 * 299.99357 * 1 2 3 30 30 H 1.08991 * 109.47310 * 59.99496 * 1 2 3 31 31 H 1.08998 * 109.46651 * 240.00107 * 2 1 3 32 32 H 1.09005 * 109.47381 * 120.00624 * 2 1 3 33 33 H 1.09002 * 109.46997 * 29.99814 * 4 3 2 34 34 H 1.08991 * 109.47365 * 149.99738 * 4 3 2 35 35 H 0.96996 * 120.00207 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47453 * 60.00099 * 15 13 3 37 37 H 1.08996 * 109.47281 * 299.99845 * 15 13 3 38 38 H 1.07997 * 127.24613 * 0.02562 * 20 19 17 39 39 H 1.09002 * 115.55088 * 0.57441 * 22 21 20 40 40 H 1.09001 * 117.49733 * 214.97195 * 23 22 21 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 21 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.51638 * 107.47550 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1490 2.3897 -2.8780 8 7 3.3491 3.1258 -3.6180 9 14 5.9130 2.0956 -3.4176 10 1 6.6004 1.2395 -2.4177 11 1 5.9200 1.4165 -4.7383 12 1 6.6209 3.3965 -3.5263 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 8 2.3066 2.1955 3.5759 17 6 2.1351 1.7099 4.8210 18 8 1.7328 0.5748 4.9801 19 6 2.4350 2.5575 5.9913 20 6 2.3061 2.1906 7.3524 21 6 2.6904 3.2794 8.0585 22 6 2.7344 3.4012 9.5600 23 6 3.8392 4.2684 10.1668 24 6 2.3911 4.7623 10.1687 25 7 3.0221 4.2380 7.1671 26 1 3.3308 5.1279 7.3986 27 7 2.8737 3.8008 5.9683 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 3.6751 3.5163 -4.4439 36 1 2.6211 0.4185 2.5302 37 1 0.9433 1.0125 2.5299 38 1 1.9715 1.2416 7.7446 39 1 2.4318 2.5118 10.1129 40 1 4.2635 3.9495 11.1189 41 1 4.5347 4.7507 9.4800 42 1 2.1338 5.5697 9.4831 43 1 1.8623 4.7684 11.1218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919066454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:37 Heat of formation + Delta-G solvation = -14.877536 kcal Electronic energy + Delta-G solvation = -26094.387774 eV Core-core repulsion = 22142.826521 eV Total energy + Delta-G solvation = -3951.561253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.09079 -40.26130 -38.83352 -37.72524 -36.29552 -35.24091 -32.81561 -32.28634 -31.02165 -30.13329 -29.10569 -26.63800 -24.79383 -23.77815 -23.02938 -23.01812 -22.42942 -21.47660 -20.27350 -18.60403 -18.20993 -17.45589 -16.75593 -16.55731 -16.37997 -16.13215 -15.79106 -15.70798 -15.20333 -14.56661 -14.39405 -14.19836 -13.85118 -13.43564 -13.27260 -12.88735 -12.71648 -12.49929 -12.23159 -12.08762 -12.02154 -11.64553 -11.58857 -11.25367 -11.20727 -11.01632 -10.90108 -10.84174 -10.78574 -10.57538 -10.47438 -10.11748 -9.77085 -9.60877 -9.16539 -8.93422 -8.42366 -7.70316 -6.03087 -4.07550 1.17416 1.58655 2.23577 2.67768 3.02206 3.31310 3.31877 3.33341 3.39539 3.44397 3.79363 3.94043 4.13916 4.25690 4.31780 4.46638 4.53038 4.92572 4.96317 4.99750 5.15696 5.19170 5.27084 5.27519 5.31650 5.34355 5.42108 5.42820 5.55643 5.63226 5.77763 5.96374 6.04101 6.23213 6.32975 6.49070 6.57541 7.03758 7.43157 7.44415 7.52576 7.79867 7.93585 8.23846 8.34594 8.89312 9.04354 9.57370 11.05136 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.002435 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.989951 B =11495.206048 C =12477.437311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.059 0.941 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.516 6.516 15 C 0.049 3.951 16 O -0.313 6.313 17 C 0.555 3.445 18 O -0.502 6.502 19 C 0.004 3.996 20 C -0.163 4.163 21 C 0.043 3.957 22 C -0.087 4.087 23 C -0.173 4.173 24 C -0.173 4.173 25 N -0.375 5.375 26 H 0.446 0.554 27 N -0.215 5.215 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.168 0.832 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 -2.089 26.983 27.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.391 6.391 15 C -0.028 4.028 16 O -0.226 6.226 17 C 0.396 3.604 18 O -0.388 6.388 19 C -0.154 4.154 20 C -0.191 4.191 21 C -0.081 4.081 22 C -0.107 4.107 23 C -0.211 4.211 24 C -0.211 4.211 25 N -0.091 5.091 26 H 0.291 0.709 27 N -0.052 5.052 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.186 0.814 39 H 0.153 0.847 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.880 -0.925 26.006 26.310 hybrid contribution 0.850 -0.507 0.163 1.003 sum -3.029 -1.433 26.169 26.383 Atomic orbital electron populations 1.22235 0.96564 1.01667 1.02426 1.21508 0.93738 0.83972 1.03032 1.48199 1.63985 1.13409 1.07080 1.19327 0.96452 0.93733 0.77589 1.21476 0.96884 1.31888 1.06244 0.92323 1.24937 0.97904 0.94918 0.96395 1.69937 1.35605 1.33471 1.14344 0.86432 0.84598 0.78062 0.78266 1.19786 1.20984 1.20874 1.19688 0.79775 0.87172 0.84250 1.90730 1.44247 1.17437 1.86672 1.23031 1.02830 0.92654 0.84318 1.86706 1.78061 1.44231 1.13639 1.19571 0.74182 0.84317 0.82285 1.90848 1.42942 1.18376 1.86672 1.20701 1.10004 0.92317 0.92379 1.21386 1.07356 1.00299 0.90035 1.20479 1.05398 0.90109 0.92115 1.20527 1.05573 0.97226 0.87363 1.23117 0.91750 1.02953 1.03272 1.23120 0.98536 0.96184 1.03248 1.43395 1.48484 1.14588 1.02668 0.70943 1.73932 1.15545 1.12368 1.03369 0.91910 0.93095 0.91818 0.89448 0.91701 0.94623 0.93710 0.92762 0.88468 0.88543 0.81432 0.84716 0.87423 0.88649 0.88653 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.10 1.64 5.93 -4.04 -0.02 1.62 16 3 N -0.59 -12.76 2.46 -175.06 -0.43 -13.19 16 4 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 5 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 9 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.51 11.18 7.75 -10.98 -0.09 11.10 16 14 O -0.52 -13.87 16.08 -14.10 -0.23 -14.09 16 15 C 0.05 0.85 4.51 36.01 0.16 1.01 16 16 O -0.31 -5.85 9.77 -47.27 -0.46 -6.31 16 17 C 0.55 9.09 7.97 34.54 0.28 9.37 16 18 O -0.50 -8.36 16.72 -19.25 -0.32 -8.69 16 19 C 0.00 0.06 7.17 -82.78 -0.59 -0.53 16 20 C -0.16 -1.76 10.73 -39.35 -0.42 -2.18 16 21 C 0.04 0.37 6.64 -82.21 -0.55 -0.18 16 22 C -0.09 -0.44 6.26 -91.77 -0.57 -1.02 16 23 C -0.17 -0.65 10.22 -26.73 -0.27 -0.93 16 24 C -0.17 -0.64 10.22 -26.73 -0.27 -0.92 16 25 N -0.38 -3.49 6.80 33.50 0.23 -3.26 16 26 H 0.45 2.61 8.96 -190.44 -1.71 0.90 16 27 N -0.22 -2.99 12.24 33.41 0.41 -2.58 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.67 7.22 -51.93 -0.37 0.29 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 32 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 33 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.10 1.49 7.39 -51.93 -0.38 1.11 16 37 H 0.10 1.43 7.18 -51.93 -0.37 1.06 16 38 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -37.01 377.78 -9.14 -46.15 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -7.32 Total: -2.97 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -2.42 Total: 8.16 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.94 Total: -45.07 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -1.01 Total: -29.09 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.01 -9.14 -46.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919066454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.276 kcal (2) G-P(sol) polarization free energy of solvation -37.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds