Wall clock time and date at job start Tue Mar 31 2020 12:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47302 * 2 1 4 4 C 1.46497 * 120.00155 * 270.00297 * 3 2 1 5 5 C 1.50701 * 109.47184 * 269.99835 * 4 3 2 6 6 H 1.08002 * 119.99726 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99885 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00189 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99576 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47565 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47122 * 120.00742 * 9 7 5 12 12 H 1.48507 * 109.47131 * 240.00160 * 9 7 5 13 13 C 1.34781 * 119.99938 * 90.00236 * 3 2 1 14 14 O 1.21281 * 119.99794 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99713 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.46675 * 179.97438 * 15 13 3 17 17 C 1.34736 * 116.99879 * 180.02562 * 16 15 13 18 18 O 1.21483 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.47582 * 119.99749 * 180.02562 * 17 16 15 20 20 C 1.41554 * 126.52025 * 180.02562 * 19 17 16 21 21 C 1.35346 * 105.50008 * 180.02562 * 20 19 17 22 22 C 1.50701 * 126.37811 * 180.02562 * 21 20 19 23 23 C 1.53001 * 117.51956 * 146.27832 * 22 21 20 24 24 C 1.52999 * 60.00190 * 107.47765 * 23 22 21 25 25 N 1.35044 * 107.24200 * 0.25702 * 21 20 19 26 26 H 0.96998 * 124.88135 * 179.74074 * 25 21 20 27 27 N 1.28468 * 110.24325 * 359.55395 * 25 21 20 28 28 H 1.09000 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46786 * 299.99357 * 1 2 3 30 30 H 1.08991 * 109.47310 * 59.99496 * 1 2 3 31 31 H 1.08998 * 109.46651 * 240.00107 * 2 1 3 32 32 H 1.09005 * 109.47381 * 120.00624 * 2 1 3 33 33 H 1.09002 * 109.46997 * 29.99814 * 4 3 2 34 34 H 1.08991 * 109.47365 * 149.99738 * 4 3 2 35 35 H 0.96996 * 120.00207 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47453 * 60.00099 * 15 13 3 37 37 H 1.08996 * 109.47281 * 299.99845 * 15 13 3 38 38 H 1.07997 * 127.24613 * 0.02562 * 20 19 17 39 39 H 1.09002 * 115.55088 * 0.57441 * 22 21 20 40 40 H 1.09001 * 117.49733 * 214.97195 * 23 22 21 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 21 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.51638 * 107.47550 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1490 2.3897 -2.8780 8 7 3.3491 3.1258 -3.6180 9 14 5.9130 2.0956 -3.4176 10 1 6.6004 1.2395 -2.4177 11 1 5.9200 1.4165 -4.7383 12 1 6.6209 3.3965 -3.5263 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 8 2.3066 2.1955 3.5759 17 6 2.1351 1.7099 4.8210 18 8 1.7328 0.5748 4.9801 19 6 2.4350 2.5575 5.9913 20 6 2.3061 2.1906 7.3524 21 6 2.6904 3.2794 8.0585 22 6 2.7344 3.4012 9.5600 23 6 3.8392 4.2684 10.1668 24 6 2.3911 4.7623 10.1687 25 7 3.0221 4.2380 7.1671 26 1 3.3308 5.1279 7.3986 27 7 2.8737 3.8008 5.9683 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 3.6751 3.5163 -4.4439 36 1 2.6211 0.4185 2.5302 37 1 0.9433 1.0125 2.5299 38 1 1.9715 1.2416 7.7446 39 1 2.4318 2.5118 10.1129 40 1 4.2635 3.9495 11.1189 41 1 4.5347 4.7507 9.4800 42 1 2.1338 5.5697 9.4831 43 1 1.8623 4.7684 11.1218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919066454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:36 Heat of formation + Delta-G solvation = -38.804914 kcal Electronic energy + Delta-G solvation = -26095.425343 eV Core-core repulsion = 22142.826521 eV Total energy + Delta-G solvation = -3952.598822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.93139 -41.62630 -40.49248 -38.11369 -37.65248 -36.97872 -34.94512 -33.19065 -31.86471 -31.68473 -30.62953 -28.49623 -25.99731 -24.83397 -24.37872 -23.97176 -23.27228 -22.24567 -21.38959 -20.26155 -19.09853 -18.68035 -18.39561 -18.06268 -17.87662 -17.40790 -16.91438 -16.70798 -16.45776 -16.16224 -15.84715 -15.15188 -14.87371 -14.71349 -14.55610 -14.45157 -13.93727 -13.86937 -13.60376 -13.28831 -13.20341 -13.06833 -12.69987 -12.51367 -12.46546 -12.23761 -12.09867 -12.08743 -12.06908 -12.03515 -11.80112 -11.69928 -11.37885 -10.74410 -10.66021 -10.65794 -9.87289 -9.54830 -8.23946 -6.38220 0.09552 0.86267 1.07689 1.35785 1.38446 1.50107 1.60956 1.83301 1.92722 2.31586 2.43847 2.99372 3.05965 3.22544 3.36719 3.42354 3.73697 3.82646 3.96442 4.02507 4.04670 4.12763 4.16283 4.39185 4.44315 4.60332 4.67437 4.76449 4.87820 4.95511 5.00766 5.03143 5.07122 5.14079 5.17415 5.19791 5.20281 5.37470 5.54252 5.79436 5.90269 6.03745 6.38066 6.60464 6.71127 6.75146 7.20831 7.36109 8.83809 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.002435 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.989951 B =11495.206048 C =12477.437311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.268 1.268 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.499 3.501 14 O -0.578 6.578 15 C 0.061 3.939 16 O -0.340 6.340 17 C 0.555 3.445 18 O -0.509 6.509 19 C -0.025 4.025 20 C -0.174 4.174 21 C 0.066 3.934 22 C -0.101 4.101 23 C -0.167 4.167 24 C -0.166 4.166 25 N -0.360 5.360 26 H 0.459 0.541 27 N -0.257 5.257 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.031 0.969 34 H -0.002 1.002 35 H 0.268 0.732 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.184 0.816 39 H 0.152 0.848 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 -3.637 29.533 30.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.192 1.192 12 H -0.208 1.208 13 C 0.286 3.714 14 O -0.458 6.458 15 C -0.016 4.016 16 O -0.254 6.254 17 C 0.398 3.602 18 O -0.395 6.395 19 C -0.182 4.182 20 C -0.201 4.201 21 C -0.059 4.059 22 C -0.121 4.121 23 C -0.205 4.205 24 C -0.203 4.203 25 N -0.078 5.078 26 H 0.307 0.693 27 N -0.095 5.095 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.016 0.984 35 H 0.077 0.923 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.201 0.799 39 H 0.170 0.830 40 H 0.141 0.859 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.532 -2.521 28.566 28.893 hybrid contribution 0.703 0.026 -0.530 0.881 sum -2.829 -2.495 28.036 28.289 Atomic orbital electron populations 1.22180 0.94278 1.03854 1.01831 1.21892 0.95608 0.80866 1.04518 1.48203 1.63606 1.15323 1.05541 1.18798 0.95659 0.91623 0.79758 1.21730 0.97805 1.32092 1.06551 0.92780 1.25865 1.02465 0.94459 0.96427 1.70050 1.37695 1.34145 1.14828 0.85350 0.78917 0.77989 0.78434 1.19188 1.19217 1.20824 1.20525 0.78384 0.86636 0.85855 1.90690 1.47096 1.20258 1.87734 1.22936 1.05083 0.91984 0.81592 1.86701 1.78705 1.45286 1.14751 1.19886 0.73776 0.84622 0.81887 1.90816 1.43503 1.18597 1.86622 1.20735 1.11858 0.92761 0.92799 1.21649 1.08086 1.01767 0.88612 1.20957 1.02638 0.88762 0.93577 1.20710 1.07515 0.98897 0.84936 1.23225 0.91711 1.01881 1.03640 1.23229 0.98628 0.94855 1.03633 1.43438 1.47214 1.15351 1.01786 0.69320 1.73844 1.17214 1.12812 1.05619 0.88238 0.92445 0.93715 0.89882 0.88282 0.95064 0.98381 0.92348 0.85978 0.85532 0.79866 0.83019 0.85942 0.88753 0.88710 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 10.24 71.98 0.74 -3.39 16 2 C 0.09 2.88 5.93 86.38 0.51 3.39 16 3 N -0.59 -26.11 2.46 -826.16 -2.03 -28.14 16 4 C 0.26 14.47 5.16 85.63 0.44 14.92 16 5 C -0.54 -31.96 9.39 25.60 0.24 -31.72 16 6 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 9 Si 0.97 45.82 29.54 68.60 2.03 47.85 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 C 0.50 22.60 7.75 87.66 0.68 23.28 16 14 O -0.58 -32.83 16.08 15.77 0.25 -32.58 16 15 C 0.06 2.05 4.51 71.24 0.32 2.38 16 16 O -0.34 -12.90 9.77 -50.07 -0.49 -13.39 16 17 C 0.56 18.20 7.97 70.29 0.56 18.76 16 18 O -0.51 -16.43 16.72 19.89 0.33 -16.10 16 19 C -0.02 -0.71 7.17 42.43 0.30 -0.41 16 20 C -0.17 -3.56 10.73 22.42 0.24 -3.32 16 21 C 0.07 1.01 6.64 41.40 0.28 1.29 16 22 C -0.10 -0.74 6.26 -11.54 -0.07 -0.82 16 23 C -0.17 -0.77 10.22 30.59 0.31 -0.45 16 24 C -0.17 -0.74 10.22 30.60 0.31 -0.43 16 25 N -0.36 -6.42 6.80 -47.93 -0.33 -6.74 16 26 H 0.46 4.93 8.96 -219.99 -1.97 2.95 16 27 N -0.26 -7.23 12.24 -48.21 -0.59 -7.82 16 28 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 1.38 7.22 -2.39 -0.02 1.36 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 2.66 8.07 -2.39 -0.02 2.64 16 32 H 0.10 2.41 6.44 -2.38 -0.02 2.39 16 33 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 34 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 35 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.12 3.52 7.39 -2.39 -0.02 3.50 16 37 H 0.13 3.50 7.18 -2.39 -0.02 3.49 16 38 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 39 H 0.15 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.12 0.22 8.14 -2.38 -0.02 0.21 16 Total: -1.00 -84.83 377.78 3.86 -80.97 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -0.93 Total: 8.22 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: 5.33 Total: 24.34 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -2.66 Total: -99.31 kcal Atomic # 8 Polarization: -62.17 SS G_CDS: 0.10 Total: -62.07 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -84.83 3.86 -80.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919066454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.165 kcal (2) G-P(sol) polarization free energy of solvation -84.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds