Wall clock time and date at job start Tue Mar 31 2020 13:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47151 * 2 1 4 4 C 1.34228 * 116.99841 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00305 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00045 * 179.97438 * 4 3 2 7 7 H 1.09002 * 115.56019 * 34.30714 * 6 4 3 8 8 C 1.53073 * 117.49785 * 248.60205 * 6 4 3 9 9 C 1.52994 * 59.98325 * 252.51343 * 8 6 4 10 10 H 1.09001 * 117.50051 * 107.50204 * 9 8 6 11 11 C 1.50706 * 117.49755 * 252.49375 * 9 8 6 12 12 O 1.21297 * 119.99667 * 68.74859 * 11 9 8 13 13 N 1.34773 * 120.00081 * 248.47589 * 11 9 8 14 14 C 1.40155 * 119.99816 * 180.02562 * 13 11 9 15 15 C 1.40407 * 125.97444 * 359.71655 * 14 13 11 16 16 C 1.35239 * 107.86729 * 179.82806 * 15 14 13 17 17 C 1.50704 * 126.07010 * 180.15565 * 16 15 14 18 18 N 1.34963 * 107.86100 * 0.42890 * 16 15 14 19 19 C 1.46508 * 125.97361 * 179.76814 * 18 16 15 20 20 C 1.50703 * 109.46805 * 269.97726 * 19 18 16 21 21 H 1.08002 * 119.99961 * 0.02562 * 20 19 18 22 22 C 1.37873 * 119.99796 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00278 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99703 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47082 * 89.99835 * 24 22 20 26 26 H 1.48503 * 109.47153 * 209.99697 * 24 22 20 27 27 H 1.48500 * 109.47247 * 329.99675 * 24 22 20 28 28 N 1.31221 * 125.97343 * 180.02562 * 14 13 11 29 29 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46799 * 299.99903 * 1 2 3 31 31 H 1.08996 * 109.47262 * 59.99841 * 1 2 3 32 32 H 1.08999 * 109.46799 * 240.00097 * 2 1 3 33 33 H 1.08996 * 109.47262 * 120.00159 * 2 1 3 34 34 H 1.09005 * 117.51537 * 145.03258 * 8 6 4 35 35 H 1.09000 * 117.51234 * 359.97438 * 8 6 4 36 36 H 0.96998 * 120.00525 * 359.97438 * 13 11 9 37 37 H 1.07999 * 126.06876 * 359.97438 * 15 14 13 38 38 H 1.08995 * 109.47377 * 270.32107 * 17 16 15 39 39 H 1.09000 * 109.47171 * 30.31781 * 17 16 15 40 40 H 1.09003 * 109.47249 * 150.31665 * 17 16 15 41 41 H 1.08997 * 109.47476 * 29.97701 * 19 18 16 42 42 H 1.09001 * 109.46969 * 149.98434 * 19 18 16 43 43 H 0.97003 * 119.99933 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9373 -0.0012 7 1 3.3502 3.6825 0.5531 8 6 4.6482 3.4007 -1.2658 9 6 5.4448 3.0714 -0.0017 10 1 6.0309 2.1524 -0.0013 11 6 6.0424 4.2236 0.7641 12 8 5.3200 5.0008 1.3519 13 7 7.3796 4.3874 0.8003 14 6 7.9353 5.4587 1.5130 15 6 7.2203 6.4344 2.2260 16 6 8.1155 7.2870 2.7742 17 6 7.7913 8.4863 3.6273 18 7 9.3506 6.8768 2.4165 19 6 10.6129 7.5195 2.7907 20 6 10.9781 8.5506 1.7541 21 1 10.3342 8.7114 0.9021 22 6 12.1343 9.2886 1.8935 23 7 12.9181 9.0932 2.9312 24 14 12.5867 10.5672 0.6089 25 1 11.9996 11.8778 0.9869 26 1 14.0646 10.6905 0.5322 27 1 12.0555 10.1498 -0.7135 28 7 9.2145 5.7286 1.6258 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.5562 4.4507 -1.5435 35 1 4.7104 2.6981 -2.0969 36 1 7.9576 3.7635 0.3339 37 1 6.1461 6.4921 2.3218 38 1 7.6639 9.3615 2.9904 39 1 6.8697 8.3012 4.1791 40 1 8.6059 8.6635 4.3296 41 1 10.5006 8.0035 3.7608 42 1 11.4001 6.7678 2.8485 43 1 13.7314 9.6127 3.0294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935185390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:49 Heat of formation + Delta-G solvation = -21.568046 kcal Electronic energy + Delta-G solvation = -25721.743920 eV Core-core repulsion = 21769.892545 eV Total energy + Delta-G solvation = -3951.851376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17649 -40.68816 -39.58569 -37.42830 -36.11268 -34.85558 -33.39246 -32.14623 -31.48395 -30.86854 -27.16484 -26.41205 -26.12405 -24.65726 -23.16516 -22.84590 -21.38621 -20.51634 -19.86296 -19.21183 -18.33976 -17.20951 -16.89781 -16.72319 -16.43537 -16.14483 -15.39235 -15.23672 -14.82581 -14.42816 -14.36755 -14.17990 -13.95908 -13.25371 -13.14776 -12.92344 -12.73855 -12.50038 -12.38118 -12.30688 -12.23320 -12.00791 -11.69617 -11.42765 -11.25525 -11.13660 -11.06553 -10.94721 -10.84854 -10.80012 -10.48271 -10.26340 -9.99343 -9.65945 -9.55706 -8.65704 -7.97767 -7.49914 -6.26917 -4.34565 1.64782 2.01681 2.19093 2.73437 2.83206 3.20234 3.26849 3.32146 3.33602 3.70955 3.77821 4.10072 4.24994 4.28711 4.36309 4.49455 4.53623 4.63607 4.80590 4.82901 5.06990 5.15951 5.24152 5.33371 5.40088 5.50028 5.51802 5.54803 5.68605 5.89306 6.03999 6.09166 6.20235 6.41332 6.49677 6.67749 6.90599 7.03643 7.37371 7.39784 7.59208 7.65586 7.87091 8.01997 8.15978 8.61596 8.73045 9.31804 10.80417 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.031733 B = 0.002034 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.138897 B =13760.877112 C =14002.972726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.351 6.351 4 C 0.497 3.503 5 O -0.506 6.506 6 C -0.136 4.136 7 H 0.153 0.847 8 C -0.113 4.113 9 C -0.152 4.152 10 H 0.143 0.857 11 C 0.550 3.450 12 O -0.513 6.513 13 N -0.623 5.623 14 C 0.262 3.738 15 C -0.290 4.290 16 C 0.092 3.908 17 C -0.084 4.084 18 N -0.315 5.315 19 C 0.258 3.742 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.272 1.272 28 N -0.318 5.318 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.413 0.587 37 H 0.159 0.841 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.333 -14.062 -5.858 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.268 6.268 4 C 0.340 3.660 5 O -0.394 6.394 6 C -0.156 4.156 7 H 0.170 0.830 8 C -0.151 4.151 9 C -0.173 4.173 10 H 0.161 0.839 11 C 0.335 3.665 12 O -0.387 6.387 13 N -0.269 5.269 14 C 0.010 3.990 15 C -0.321 4.321 16 C -0.040 4.040 17 C -0.142 4.142 18 N -0.097 5.097 19 C 0.140 3.860 20 C -0.575 4.575 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.197 1.197 28 N -0.149 5.149 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.249 0.751 37 H 0.177 0.823 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.191 -14.083 -5.629 25.252 hybrid contribution 0.067 0.321 -0.653 0.731 sum -20.123 -13.762 -6.282 25.175 Atomic orbital electron populations 1.21817 0.92392 1.03083 1.03739 1.23087 0.95545 0.79856 1.02774 1.86491 1.23906 1.32615 1.83750 1.22447 0.80720 0.90790 0.72077 1.90681 1.60544 1.42745 1.45421 1.21691 0.93995 0.93918 1.05975 0.82957 1.23162 0.97536 1.04313 0.90060 1.22212 0.92915 1.00323 1.01849 0.83947 1.19333 0.81314 0.85150 0.80718 1.90666 1.59971 1.44482 1.43592 1.42285 1.06690 1.27381 1.50591 1.18956 0.91567 0.90871 0.97650 1.21233 1.00810 0.99305 1.10790 1.21077 0.85604 0.97824 0.99478 1.20339 1.02027 0.93686 0.98184 1.49010 1.07186 1.18167 1.35383 1.19712 0.76905 0.92665 0.96709 1.21311 1.07912 1.19712 1.08519 0.91747 1.24924 0.95543 0.97272 0.96032 1.69918 1.13593 1.40886 1.28527 0.86352 0.77662 0.81145 0.81512 1.20290 1.20865 1.19709 1.77272 1.14625 1.04967 1.18025 0.90116 0.91293 0.91357 0.91089 0.91032 0.86060 0.86701 0.75145 0.82314 0.90380 0.90790 0.90824 0.92738 0.92953 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.29 37.16 0.38 -0.32 16 2 C 0.06 0.43 6.19 37.16 0.23 0.66 16 3 O -0.35 -3.27 10.22 -39.25 -0.40 -3.67 16 4 C 0.50 5.12 7.74 36.01 0.28 5.40 16 5 O -0.51 -6.30 16.01 -18.75 -0.30 -6.60 16 6 C -0.14 -1.27 5.82 -91.74 -0.53 -1.81 16 7 H 0.15 1.45 7.67 -51.93 -0.40 1.05 16 8 C -0.11 -0.86 9.94 -26.70 -0.27 -1.13 16 9 C -0.15 -1.50 5.70 -91.77 -0.52 -2.02 16 10 H 0.14 1.27 7.67 -51.93 -0.40 0.87 16 11 C 0.55 7.60 7.58 -10.98 -0.08 7.52 16 12 O -0.51 -8.54 13.39 5.54 0.07 -8.47 16 13 N -0.62 -9.45 5.45 -11.13 -0.06 -9.51 16 14 C 0.26 5.26 8.11 -154.39 -1.25 4.01 16 15 C -0.29 -5.88 9.52 -39.83 -0.38 -6.26 16 16 C 0.09 1.91 6.92 -82.28 -0.57 1.34 16 17 C -0.08 -1.42 10.11 36.01 0.36 -1.06 16 18 N -0.32 -7.43 3.59 -58.32 -0.21 -7.64 16 19 C 0.26 6.58 5.99 -5.19 -0.03 6.55 16 20 C -0.54 -14.69 9.39 -34.44 -0.32 -15.01 16 21 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 24 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 28 N -0.32 -7.31 12.59 31.44 0.40 -6.91 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.47 8.13 -51.93 -0.42 0.04 16 33 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 34 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.41 5.05 8.82 -40.82 -0.36 4.69 16 37 H 0.16 3.09 5.92 -52.49 -0.31 2.78 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.25 7.07 -51.93 -0.37 0.89 16 41 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 42 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -33.49 375.86 -7.90 -41.38 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.97 Total: 4.43 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.80 Total: -0.45 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.86 Total: -48.25 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.63 Total: -18.74 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.49 -7.90 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935185390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.812 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds