Wall clock time and date at job start Tue Mar 31 2020 13:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47151 * 2 1 4 4 C 1.34228 * 116.99841 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00305 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00045 * 179.97438 * 4 3 2 7 7 H 1.09002 * 115.56019 * 34.30714 * 6 4 3 8 8 C 1.53073 * 117.49785 * 248.60205 * 6 4 3 9 9 C 1.52994 * 59.98325 * 252.51343 * 8 6 4 10 10 H 1.09001 * 117.50051 * 107.50204 * 9 8 6 11 11 C 1.50706 * 117.49755 * 252.49375 * 9 8 6 12 12 O 1.21297 * 119.99667 * 68.74859 * 11 9 8 13 13 N 1.34773 * 120.00081 * 248.47589 * 11 9 8 14 14 C 1.40155 * 119.99816 * 180.02562 * 13 11 9 15 15 C 1.40407 * 125.97444 * 359.71655 * 14 13 11 16 16 C 1.35239 * 107.86729 * 179.82806 * 15 14 13 17 17 C 1.50704 * 126.07010 * 180.15565 * 16 15 14 18 18 N 1.34963 * 107.86100 * 0.42890 * 16 15 14 19 19 C 1.46508 * 125.97361 * 179.76814 * 18 16 15 20 20 C 1.50703 * 109.46805 * 269.97726 * 19 18 16 21 21 H 1.08002 * 119.99961 * 0.02562 * 20 19 18 22 22 C 1.37873 * 119.99796 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00278 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99703 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47082 * 89.99835 * 24 22 20 26 26 H 1.48503 * 109.47153 * 209.99697 * 24 22 20 27 27 H 1.48500 * 109.47247 * 329.99675 * 24 22 20 28 28 N 1.31221 * 125.97343 * 180.02562 * 14 13 11 29 29 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46799 * 299.99903 * 1 2 3 31 31 H 1.08996 * 109.47262 * 59.99841 * 1 2 3 32 32 H 1.08999 * 109.46799 * 240.00097 * 2 1 3 33 33 H 1.08996 * 109.47262 * 120.00159 * 2 1 3 34 34 H 1.09005 * 117.51537 * 145.03258 * 8 6 4 35 35 H 1.09000 * 117.51234 * 359.97438 * 8 6 4 36 36 H 0.96998 * 120.00525 * 359.97438 * 13 11 9 37 37 H 1.07999 * 126.06876 * 359.97438 * 15 14 13 38 38 H 1.08995 * 109.47377 * 270.32107 * 17 16 15 39 39 H 1.09000 * 109.47171 * 30.31781 * 17 16 15 40 40 H 1.09003 * 109.47249 * 150.31665 * 17 16 15 41 41 H 1.08997 * 109.47476 * 29.97701 * 19 18 16 42 42 H 1.09001 * 109.46969 * 149.98434 * 19 18 16 43 43 H 0.97003 * 119.99933 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9373 -0.0012 7 1 3.3502 3.6825 0.5531 8 6 4.6482 3.4007 -1.2658 9 6 5.4448 3.0714 -0.0017 10 1 6.0309 2.1524 -0.0013 11 6 6.0424 4.2236 0.7641 12 8 5.3200 5.0008 1.3519 13 7 7.3796 4.3874 0.8003 14 6 7.9353 5.4587 1.5130 15 6 7.2203 6.4344 2.2260 16 6 8.1155 7.2870 2.7742 17 6 7.7913 8.4863 3.6273 18 7 9.3506 6.8768 2.4165 19 6 10.6129 7.5195 2.7907 20 6 10.9781 8.5506 1.7541 21 1 10.3342 8.7114 0.9021 22 6 12.1343 9.2886 1.8935 23 7 12.9181 9.0932 2.9312 24 14 12.5867 10.5672 0.6089 25 1 11.9996 11.8778 0.9869 26 1 14.0646 10.6905 0.5322 27 1 12.0555 10.1498 -0.7135 28 7 9.2145 5.7286 1.6258 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.5562 4.4507 -1.5435 35 1 4.7104 2.6981 -2.0969 36 1 7.9576 3.7635 0.3339 37 1 6.1461 6.4921 2.3218 38 1 7.6639 9.3615 2.9904 39 1 6.8697 8.3012 4.1791 40 1 8.6059 8.6635 4.3296 41 1 10.5006 8.0035 3.7608 42 1 11.4001 6.7678 2.8485 43 1 13.7314 9.6127 3.0294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935185390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:48 Heat of formation + Delta-G solvation = -41.450802 kcal Electronic energy + Delta-G solvation = -25722.606101 eV Core-core repulsion = 21769.892545 eV Total energy + Delta-G solvation = -3952.713557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.38875 -41.82311 -40.75977 -38.23856 -36.99534 -36.26786 -35.31031 -33.06853 -32.66287 -32.60100 -28.85531 -27.90090 -27.20013 -25.72653 -24.58470 -23.69077 -22.45883 -21.49748 -21.30801 -20.53103 -19.26054 -18.79728 -18.08083 -17.72083 -17.58908 -17.34751 -17.00962 -16.56080 -16.20821 -15.74638 -15.66763 -15.10916 -14.92606 -14.71767 -14.32713 -13.84036 -13.76948 -13.74519 -13.63913 -13.50205 -13.41336 -13.14076 -12.95214 -12.84819 -12.66038 -12.50872 -12.25552 -12.14169 -11.97209 -11.84965 -11.63207 -11.54754 -11.53545 -11.37401 -10.95873 -10.73009 -9.60860 -9.16584 -8.32917 -6.50502 0.75313 0.93793 1.20237 1.29731 1.38522 1.39757 1.50890 1.59918 2.10099 2.26739 2.38870 2.64706 2.97109 3.31269 3.44130 3.56353 3.76403 3.91251 4.01185 4.06802 4.09004 4.15714 4.35177 4.43579 4.57672 4.71525 4.76243 4.78351 4.81494 4.89096 4.91299 4.93345 4.97888 4.99501 5.12913 5.14418 5.24708 5.40763 5.53617 5.80612 5.91092 6.22326 6.24902 6.61410 6.62012 6.92869 7.06168 7.20496 8.73193 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.031733 B = 0.002034 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.138897 B =13760.877112 C =14002.972726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.356 6.356 4 C 0.500 3.500 5 O -0.531 6.531 6 C -0.140 4.140 7 H 0.150 0.850 8 C -0.087 4.087 9 C -0.155 4.155 10 H 0.155 0.845 11 C 0.553 3.447 12 O -0.540 6.540 13 N -0.618 5.618 14 C 0.272 3.728 15 C -0.298 4.298 16 C 0.087 3.913 17 C -0.082 4.082 18 N -0.341 5.341 19 C 0.274 3.726 20 C -0.553 4.553 21 H 0.050 0.950 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.972 3.028 25 H -0.264 1.264 26 H -0.275 1.275 27 H -0.275 1.275 28 N -0.358 5.358 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.138 0.862 36 H 0.426 0.574 37 H 0.169 0.831 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.024 0.976 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.995 -14.071 -7.194 27.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.272 6.272 4 C 0.345 3.655 5 O -0.421 6.421 6 C -0.159 4.159 7 H 0.168 0.832 8 C -0.125 4.125 9 C -0.176 4.176 10 H 0.173 0.827 11 C 0.341 3.659 12 O -0.416 6.416 13 N -0.267 5.267 14 C 0.018 3.982 15 C -0.329 4.329 16 C -0.043 4.043 17 C -0.140 4.140 18 N -0.124 5.124 19 C 0.155 3.845 20 C -0.591 4.591 21 H 0.068 0.932 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.796 3.204 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.200 1.200 28 N -0.188 5.188 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.265 0.735 37 H 0.187 0.813 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.886 -14.114 -6.970 26.959 hybrid contribution 0.444 0.219 -0.230 0.546 sum -21.443 -13.895 -7.200 26.546 Atomic orbital electron populations 1.21840 0.90478 1.04424 1.03768 1.23357 0.97071 0.78799 1.02850 1.86494 1.23318 1.34057 1.83332 1.22557 0.80908 0.90738 0.71336 1.90671 1.61094 1.43540 1.46799 1.21698 0.93276 0.93522 1.07418 0.83184 1.23360 0.94198 1.05379 0.89519 1.22101 0.93245 0.99038 1.03250 0.82734 1.20006 0.80391 0.85531 0.80008 1.90640 1.60387 1.45836 1.44733 1.42449 1.07538 1.26451 1.50237 1.19304 0.90809 0.91466 0.96641 1.21443 1.01114 0.99364 1.10977 1.21774 0.84660 0.98717 0.99181 1.20477 1.03336 0.92346 0.97855 1.48794 1.07258 1.19215 1.37115 1.19267 0.77388 0.91494 0.96333 1.21428 1.08353 1.20715 1.08611 0.93164 1.25733 0.95163 0.99004 0.97929 1.70002 1.13969 1.41722 1.29912 0.85348 0.77670 0.78866 0.78552 1.18915 1.19971 1.20040 1.77189 1.16357 1.05685 1.19595 0.88120 0.91488 0.91056 0.90678 0.91364 0.85247 0.84372 0.73542 0.81326 0.89695 0.87511 0.91334 0.92951 0.95786 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 71.98 0.74 -0.36 16 2 C 0.05 0.67 6.19 71.98 0.45 1.11 16 3 O -0.36 -6.17 10.22 -51.39 -0.53 -6.69 16 4 C 0.50 9.62 7.74 71.24 0.55 10.17 16 5 O -0.53 -12.58 16.01 21.97 0.35 -12.23 16 6 C -0.14 -2.36 5.82 -11.52 -0.07 -2.43 16 7 H 0.15 2.65 7.67 -2.39 -0.02 2.63 16 8 C -0.09 -1.09 9.94 30.62 0.30 -0.78 16 9 C -0.16 -2.77 5.70 -11.54 -0.07 -2.84 16 10 H 0.16 2.45 7.67 -2.39 -0.02 2.43 16 11 C 0.55 14.62 7.58 87.66 0.66 15.28 16 12 O -0.54 -17.44 13.39 -3.08 -0.04 -17.49 16 13 N -0.62 -18.31 5.45 -307.51 -1.68 -19.99 16 14 C 0.27 10.92 8.11 133.32 1.08 12.00 16 15 C -0.30 -12.00 9.52 22.11 0.21 -11.79 16 16 C 0.09 3.65 6.92 41.39 0.29 3.93 16 17 C -0.08 -2.71 10.11 71.24 0.72 -1.99 16 18 N -0.34 -16.52 3.59 -338.43 -1.22 -17.74 16 19 C 0.27 14.51 5.99 85.63 0.51 15.03 16 20 C -0.55 -30.94 9.39 25.60 0.24 -30.70 16 21 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 22 C 0.02 1.24 5.46 84.65 0.46 1.70 16 23 N -0.92 -51.75 13.29 21.44 0.28 -51.47 16 24 Si 0.97 42.86 29.54 68.60 2.03 44.89 16 25 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 28 N -0.36 -16.80 12.59 -54.45 -0.69 -17.48 16 29 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 33 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 34 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.43 10.08 8.82 -92.71 -0.82 9.26 16 37 H 0.17 6.43 5.92 -2.91 -0.02 6.41 16 38 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.07 2.32 7.07 -2.39 -0.02 2.30 16 41 H 0.05 2.74 7.04 -2.39 -0.02 2.72 16 42 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -72.82 375.86 4.83 -67.99 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.23 Total: 21.87 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 6.09 Total: 8.34 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -3.29 Total: -106.68 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.21 Total: -36.41 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -72.82 4.83 -67.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935185390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.535 kcal (2) G-P(sol) polarization free energy of solvation -72.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds