Wall clock time and date at job start Tue Mar 31 2020 13:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35685 * 116.99817 * 2 1 4 4 C 1.38740 * 119.58115 * 179.97438 * 3 2 1 5 5 C 1.39718 * 119.07785 * 180.02562 * 4 3 2 6 6 C 1.48176 * 120.86415 * 179.97438 * 5 4 3 7 7 O 1.21511 * 120.00083 * 33.47209 * 6 5 4 8 8 N 1.34777 * 120.00029 * 213.48287 * 6 5 4 9 9 C 1.46964 * 120.59184 * 5.01770 * 8 6 5 10 10 C 1.53814 * 108.39914 * 124.75894 * 9 8 6 11 11 N 1.46965 * 108.57912 * 49.63438 * 10 9 8 12 12 C 1.36937 * 120.59261 * 124.62308 * 11 10 9 13 13 H 1.08004 * 119.99782 * 210.91475 * 12 11 10 14 14 C 1.38811 * 120.00153 * 30.91885 * 12 11 10 15 15 N 1.31626 * 120.00027 * 215.02113 * 14 12 11 16 16 Si 1.86799 * 119.99996 * 35.01311 * 14 12 11 17 17 H 1.48502 * 109.47024 * 92.94876 * 16 14 12 18 18 H 1.48508 * 109.47008 * 212.94967 * 16 14 12 19 19 H 1.48502 * 109.47086 * 332.94622 * 16 14 12 20 20 C 1.46968 * 118.81404 * 304.64890 * 11 10 9 21 21 C 1.46965 * 120.59401 * 185.29606 * 8 6 5 22 22 C 1.39719 * 118.27716 * 359.97438 * 5 4 3 23 23 C 1.38738 * 119.08007 * 0.02562 * 22 5 4 24 24 O 1.35680 * 119.58656 * 180.02562 * 23 22 5 25 25 C 1.42906 * 116.99898 * 180.02562 * 24 23 22 26 26 N 1.32252 * 119.58553 * 359.72703 * 3 2 1 27 27 H 1.08995 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47126 * 300.00160 * 1 2 3 29 29 H 1.09006 * 109.47081 * 59.99982 * 1 2 3 30 30 H 1.08004 * 120.46037 * 359.97438 * 4 3 2 31 31 H 1.09003 * 109.60654 * 244.53853 * 9 8 6 32 32 H 1.08993 * 109.61226 * 5.04729 * 9 8 6 33 33 H 1.08995 * 109.74035 * 289.84386 * 10 9 8 34 34 H 1.09001 * 109.53312 * 169.29716 * 10 9 8 35 35 H 0.96993 * 119.99816 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.60242 * 295.48190 * 20 11 10 37 37 H 1.08997 * 109.61091 * 174.97335 * 20 11 10 38 38 H 1.09001 * 109.60756 * 354.94508 * 21 8 6 39 39 H 1.08994 * 109.61379 * 115.28813 * 21 8 6 40 40 H 1.08008 * 120.46510 * 179.97438 * 22 5 4 41 41 H 1.09008 * 109.46931 * 180.02562 * 25 24 23 42 42 H 1.08997 * 109.46923 * 299.99580 * 25 24 23 43 43 H 1.08998 * 109.47386 * 59.99677 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4310 1.2715 0.0005 5 6 4.0543 2.5219 0.0011 6 6 5.5317 2.6348 0.0022 7 8 6.2049 1.8059 -0.5777 8 7 6.1290 3.6568 0.6467 9 6 5.3365 4.6040 1.4434 10 6 5.9117 4.6390 2.8695 11 7 7.3663 4.8297 2.7831 12 6 7.9730 5.8687 3.4371 13 1 8.8653 6.3178 3.0265 14 6 7.4413 6.3445 4.6278 15 7 7.5053 7.6285 4.9105 16 14 6.6347 5.1628 5.8287 17 1 7.6391 4.7041 6.8218 18 1 5.5232 5.8530 6.5313 19 1 6.1006 3.9919 5.0878 20 6 8.1582 3.8858 1.9819 21 6 7.5837 3.8476 0.5603 22 6 3.2483 3.6633 0.0005 23 6 1.8689 3.5147 0.0000 24 8 1.0765 4.6160 -0.0011 25 6 -0.3359 4.3990 -0.0011 26 7 1.3167 2.3129 -0.0055 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0199 0.3662 0.0014 31 1 5.3964 5.5968 0.9974 32 1 4.2975 4.2762 1.4742 33 1 5.6955 3.6989 3.3768 34 1 5.4664 5.4665 3.4218 35 1 7.1341 7.9609 5.7427 36 1 8.1019 2.8921 2.4261 37 1 9.1964 4.2159 1.9481 38 1 8.0289 3.0201 0.0080 39 1 7.7999 4.7862 0.0503 40 1 3.6929 4.6476 0.0013 41 1 -0.8511 5.3596 -0.0025 42 1 -0.6169 3.8352 -0.8906 43 1 -0.6171 3.8367 0.8893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949107208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:31 Heat of formation + Delta-G solvation = -10.298554 kcal Electronic energy + Delta-G solvation = -27771.126255 eV Core-core repulsion = 23819.763561 eV Total energy + Delta-G solvation = -3951.362694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.34492 -39.79104 -39.13688 -37.31724 -36.92113 -34.16152 -32.87682 -31.54435 -30.93282 -30.38139 -28.26520 -27.32108 -26.84882 -24.63974 -23.86909 -23.01489 -22.97813 -20.99346 -19.68443 -18.45243 -18.14978 -17.02023 -16.68365 -16.62499 -16.14538 -15.82965 -15.77897 -15.52890 -15.13744 -15.01845 -14.66676 -14.30153 -13.95163 -13.62845 -13.53661 -13.41760 -13.00227 -12.64708 -12.51336 -12.35384 -12.19444 -11.96329 -11.87051 -11.71989 -11.15484 -10.87390 -10.80664 -10.55941 -10.40969 -10.39632 -10.20400 -10.04145 -9.60969 -9.52646 -8.77687 -8.36674 -8.30613 -6.99483 -6.13385 -3.37780 0.60667 0.96586 2.58301 2.69171 2.94270 3.17106 3.33860 3.45935 3.51262 3.57680 3.94018 4.46813 4.49757 4.71113 4.82875 4.89040 4.94516 4.99076 4.99477 5.04234 5.11857 5.21342 5.28468 5.34106 5.50039 5.52539 5.58630 5.73682 5.86894 5.87242 5.94398 6.01585 6.06706 6.19537 6.48104 6.56401 6.56463 6.72033 6.82323 7.08891 7.43774 7.57459 7.87137 8.20299 8.23599 8.85275 9.62470 10.03883 11.01355 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.003930 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.946174 B = 7122.405818 C = 7890.754821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.301 6.301 3 C 0.357 3.643 4 C -0.174 4.174 5 C -0.009 4.009 6 C 0.556 3.444 7 O -0.537 6.537 8 N -0.584 5.584 9 C 0.064 3.936 10 C 0.131 3.869 11 N -0.599 5.599 12 C -0.277 4.277 13 H 0.081 0.919 14 C 0.043 3.957 15 N -0.880 5.880 16 Si 0.837 3.163 17 H -0.290 1.290 18 H -0.294 1.294 19 H -0.257 1.257 20 C 0.131 3.869 21 C 0.095 3.905 22 C -0.201 4.201 23 C 0.357 3.643 24 O -0.299 6.299 25 C 0.040 3.960 26 N -0.585 5.585 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.154 0.846 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.264 0.736 36 H 0.027 0.973 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.162 0.838 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.805 -9.938 -10.761 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.208 6.208 3 C 0.179 3.821 4 C -0.196 4.196 5 C -0.019 4.019 6 C 0.343 3.657 7 O -0.416 6.416 8 N -0.315 5.315 9 C -0.060 4.060 10 C 0.004 3.996 11 N -0.323 5.323 12 C -0.404 4.404 13 H 0.099 0.901 14 C -0.159 4.159 15 N -0.519 5.519 16 Si 0.664 3.336 17 H -0.218 1.218 18 H -0.221 1.221 19 H -0.182 1.182 20 C 0.004 3.996 21 C -0.028 4.028 22 C -0.223 4.223 23 C 0.180 3.820 24 O -0.206 6.206 25 C -0.055 4.055 26 N -0.325 5.325 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.171 0.829 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.179 0.821 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.163 -10.232 -10.936 22.035 hybrid contribution -0.222 -0.446 1.006 1.123 sum -16.385 -10.678 -9.929 21.934 Atomic orbital electron populations 1.22877 0.77112 1.03109 1.02393 1.86290 1.22973 1.23940 1.87595 1.19119 0.88603 0.83426 0.90934 1.20865 0.91485 0.98868 1.08374 1.19890 0.94132 0.92351 0.95569 1.17994 0.86155 0.81711 0.79825 1.90760 1.64706 1.40574 1.45536 1.47932 1.09012 1.27204 1.47388 1.23268 0.95404 0.92754 0.94552 1.21828 0.85304 0.99970 0.92469 1.44285 1.00722 1.30583 1.56696 1.18752 1.12851 1.06462 1.02357 0.90097 1.25321 0.97766 0.95326 0.97477 1.70076 1.45435 1.11832 1.24591 0.87558 0.78743 0.83908 0.83396 1.21762 1.22052 1.18177 1.21377 0.95796 0.93205 0.89176 1.22309 0.78429 1.01956 1.00081 1.21376 0.90420 1.00865 1.09591 1.19148 0.88320 0.83763 0.90811 1.86307 1.19459 1.27328 1.87483 1.22883 0.77332 1.02974 1.02295 1.66610 1.41901 0.98570 1.25374 0.88450 0.92250 0.92310 0.82871 0.90288 0.89023 0.94864 0.90279 0.92640 0.95455 0.90484 0.89424 0.90990 0.82078 0.88338 0.92382 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.36 16 2 O -0.30 -3.46 10.47 -18.76 -0.20 -3.66 16 3 C 0.36 4.61 7.48 -17.19 -0.13 4.48 16 4 C -0.17 -2.40 9.64 -38.84 -0.37 -2.78 16 5 C -0.01 -0.13 5.39 -104.71 -0.56 -0.70 16 6 C 0.56 9.34 7.45 -12.18 -0.09 9.25 16 7 O -0.54 -10.24 16.27 5.36 0.09 -10.15 16 8 N -0.58 -9.85 2.94 -173.20 -0.51 -10.36 16 9 C 0.06 1.06 5.03 -3.37 -0.02 1.04 16 10 C 0.13 2.69 4.57 -3.36 -0.02 2.67 16 11 N -0.60 -13.55 2.64 -171.76 -0.45 -14.00 16 12 C -0.28 -7.33 9.82 -15.06 -0.15 -7.48 16 13 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 14 C 0.04 1.18 4.82 -17.43 -0.08 1.10 16 15 N -0.88 -25.63 13.97 55.49 0.78 -24.85 16 16 Si 0.84 20.59 26.66 -169.99 -4.53 16.06 16 17 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.26 -6.04 4.91 56.52 0.28 -5.76 16 20 C 0.13 2.51 6.67 -3.59 -0.02 2.48 16 21 C 0.10 1.61 6.60 -3.60 -0.02 1.59 16 22 C -0.20 -2.68 7.40 -38.84 -0.29 -2.96 16 23 C 0.36 4.59 7.48 -17.18 -0.13 4.46 16 24 O -0.30 -3.50 10.47 -18.74 -0.20 -3.69 16 25 C 0.04 0.33 10.38 101.05 1.05 1.38 16 26 N -0.58 -7.32 8.02 -13.45 -0.11 -7.42 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 29 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.15 2.05 8.03 -52.48 -0.42 1.63 16 31 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 32 H 0.09 1.34 4.16 -51.93 -0.22 1.13 16 33 H 0.03 0.70 6.68 -51.93 -0.35 0.36 16 34 H 0.08 1.73 5.95 -51.93 -0.31 1.42 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 1.42 7.93 -51.93 -0.41 1.01 16 38 H 0.09 1.42 6.99 -51.93 -0.36 1.06 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.16 2.02 5.91 -52.48 -0.31 1.71 16 41 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 42 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 43 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 LS Contribution 348.79 15.07 5.26 5.26 Total: -1.00 -31.78 348.79 -5.52 -37.30 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.86 Total: -0.37 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: 0.21 Total: 15.89 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.29 Total: -56.64 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.31 Total: -17.50 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.53 Total: 16.06 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.78 -5.52 -37.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949107208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.001 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds