Wall clock time and date at job start Tue Mar 31 2020 13:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35685 * 116.99817 * 2 1 4 4 C 1.38740 * 119.58115 * 179.97438 * 3 2 1 5 5 C 1.39718 * 119.07785 * 180.02562 * 4 3 2 6 6 C 1.48176 * 120.86415 * 179.97438 * 5 4 3 7 7 O 1.21511 * 120.00083 * 33.47209 * 6 5 4 8 8 N 1.34777 * 120.00029 * 213.48287 * 6 5 4 9 9 C 1.46964 * 120.59184 * 5.01770 * 8 6 5 10 10 C 1.53814 * 108.39914 * 124.75894 * 9 8 6 11 11 N 1.46965 * 108.57912 * 49.63438 * 10 9 8 12 12 C 1.36937 * 120.59261 * 124.62308 * 11 10 9 13 13 H 1.08004 * 119.99782 * 210.91475 * 12 11 10 14 14 C 1.38811 * 120.00153 * 30.91885 * 12 11 10 15 15 N 1.31626 * 120.00027 * 215.02113 * 14 12 11 16 16 Si 1.86799 * 119.99996 * 35.01311 * 14 12 11 17 17 H 1.48502 * 109.47024 * 92.94876 * 16 14 12 18 18 H 1.48508 * 109.47008 * 212.94967 * 16 14 12 19 19 H 1.48502 * 109.47086 * 332.94622 * 16 14 12 20 20 C 1.46968 * 118.81404 * 304.64890 * 11 10 9 21 21 C 1.46965 * 120.59401 * 185.29606 * 8 6 5 22 22 C 1.39719 * 118.27716 * 359.97438 * 5 4 3 23 23 C 1.38738 * 119.08007 * 0.02562 * 22 5 4 24 24 O 1.35680 * 119.58656 * 180.02562 * 23 22 5 25 25 C 1.42906 * 116.99898 * 180.02562 * 24 23 22 26 26 N 1.32252 * 119.58553 * 359.72703 * 3 2 1 27 27 H 1.08995 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47126 * 300.00160 * 1 2 3 29 29 H 1.09006 * 109.47081 * 59.99982 * 1 2 3 30 30 H 1.08004 * 120.46037 * 359.97438 * 4 3 2 31 31 H 1.09003 * 109.60654 * 244.53853 * 9 8 6 32 32 H 1.08993 * 109.61226 * 5.04729 * 9 8 6 33 33 H 1.08995 * 109.74035 * 289.84386 * 10 9 8 34 34 H 1.09001 * 109.53312 * 169.29716 * 10 9 8 35 35 H 0.96993 * 119.99816 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.60242 * 295.48190 * 20 11 10 37 37 H 1.08997 * 109.61091 * 174.97335 * 20 11 10 38 38 H 1.09001 * 109.60756 * 354.94508 * 21 8 6 39 39 H 1.08994 * 109.61379 * 115.28813 * 21 8 6 40 40 H 1.08008 * 120.46510 * 179.97438 * 22 5 4 41 41 H 1.09008 * 109.46931 * 180.02562 * 25 24 23 42 42 H 1.08997 * 109.46923 * 299.99580 * 25 24 23 43 43 H 1.08998 * 109.47386 * 59.99677 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4310 1.2715 0.0005 5 6 4.0543 2.5219 0.0011 6 6 5.5317 2.6348 0.0022 7 8 6.2049 1.8059 -0.5777 8 7 6.1290 3.6568 0.6467 9 6 5.3365 4.6040 1.4434 10 6 5.9117 4.6390 2.8695 11 7 7.3663 4.8297 2.7831 12 6 7.9730 5.8687 3.4371 13 1 8.8653 6.3178 3.0265 14 6 7.4413 6.3445 4.6278 15 7 7.5053 7.6285 4.9105 16 14 6.6347 5.1628 5.8287 17 1 7.6391 4.7041 6.8218 18 1 5.5232 5.8530 6.5313 19 1 6.1006 3.9919 5.0878 20 6 8.1582 3.8858 1.9819 21 6 7.5837 3.8476 0.5603 22 6 3.2483 3.6633 0.0005 23 6 1.8689 3.5147 0.0000 24 8 1.0765 4.6160 -0.0011 25 6 -0.3359 4.3990 -0.0011 26 7 1.3167 2.3129 -0.0055 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0199 0.3662 0.0014 31 1 5.3964 5.5968 0.9974 32 1 4.2975 4.2762 1.4742 33 1 5.6955 3.6989 3.3768 34 1 5.4664 5.4665 3.4218 35 1 7.1341 7.9609 5.7427 36 1 8.1019 2.8921 2.4261 37 1 9.1964 4.2159 1.9481 38 1 8.0289 3.0201 0.0080 39 1 7.7999 4.7862 0.0503 40 1 3.6929 4.6476 0.0013 41 1 -0.8511 5.3596 -0.0025 42 1 -0.6169 3.8352 -0.8906 43 1 -0.6171 3.8367 0.8893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949107208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:30 Heat of formation + Delta-G solvation = -34.321386 kcal Electronic energy + Delta-G solvation = -27772.167963 eV Core-core repulsion = 23819.763561 eV Total energy + Delta-G solvation = -3952.404402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.37339 -41.05107 -39.99192 -38.71595 -38.01883 -35.78735 -34.15150 -33.31949 -32.20291 -31.52464 -29.27827 -28.67988 -27.57946 -26.06640 -25.12086 -24.48780 -24.22039 -22.37449 -20.95800 -19.77294 -19.06759 -18.55196 -18.00841 -17.51485 -17.22325 -17.04813 -16.87181 -16.69846 -16.55693 -16.20238 -15.99003 -15.85485 -15.24742 -14.89424 -14.84449 -14.67534 -14.32512 -14.17812 -14.02798 -13.64708 -13.26013 -12.97886 -12.78798 -12.62451 -12.59951 -12.52345 -12.31082 -12.11381 -11.90824 -11.73408 -11.49979 -11.45263 -11.08902 -10.80295 -10.66437 -9.95311 -9.33519 -8.83723 -8.23980 -5.44725 -0.47209 -0.02587 1.35440 1.46538 1.48157 1.53102 1.62085 1.96549 2.07556 2.44693 2.51942 2.91323 2.99545 3.36828 3.37389 3.72052 3.84741 4.05658 4.11326 4.17230 4.29991 4.37077 4.40341 4.40949 4.41405 4.44667 4.54314 4.56273 4.64764 4.71498 4.74899 4.76542 4.87044 4.88501 4.95821 4.99250 5.17139 5.40811 5.72494 5.87279 6.12693 6.20525 6.25525 6.47385 6.87507 6.91036 7.60945 8.05606 8.94489 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.003930 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.946174 B = 7122.405818 C = 7890.754821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.309 6.309 3 C 0.359 3.641 4 C -0.183 4.183 5 C -0.018 4.018 6 C 0.561 3.439 7 O -0.562 6.562 8 N -0.588 5.588 9 C 0.078 3.922 10 C 0.126 3.874 11 N -0.611 5.611 12 C -0.264 4.264 13 H 0.053 0.947 14 C -0.004 4.004 15 N -0.926 5.926 16 Si 0.895 3.105 17 H -0.301 1.301 18 H -0.295 1.295 19 H -0.240 1.240 20 C 0.130 3.870 21 C 0.104 3.896 22 C -0.204 4.204 23 C 0.358 3.642 24 O -0.307 6.307 25 C 0.034 3.966 26 N -0.578 5.578 27 H 0.125 0.875 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.152 0.848 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.264 0.736 36 H 0.029 0.971 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.169 0.831 41 H 0.124 0.876 42 H 0.063 0.937 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.085 -11.251 -11.532 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.216 6.216 3 C 0.181 3.819 4 C -0.205 4.205 5 C -0.028 4.028 6 C 0.349 3.651 7 O -0.442 6.442 8 N -0.318 5.318 9 C -0.045 4.045 10 C 0.000 4.000 11 N -0.336 5.336 12 C -0.393 4.393 13 H 0.071 0.929 14 C -0.202 4.202 15 N -0.568 5.568 16 Si 0.723 3.277 17 H -0.230 1.230 18 H -0.221 1.221 19 H -0.163 1.163 20 C 0.005 3.995 21 C -0.019 4.019 22 C -0.226 4.226 23 C 0.180 3.820 24 O -0.214 6.214 25 C -0.061 4.061 26 N -0.319 5.319 27 H 0.143 0.857 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.170 0.830 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.186 0.814 41 H 0.142 0.858 42 H 0.081 0.919 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.478 -11.584 -11.729 24.763 hybrid contribution 0.418 -0.078 1.159 1.234 sum -18.061 -11.662 -10.570 23.956 Atomic orbital electron populations 1.23170 0.75110 1.05107 1.02652 1.86294 1.24961 1.23157 1.87176 1.19158 0.88463 0.84027 0.90297 1.20895 0.92129 0.98590 1.08845 1.19678 0.92811 0.93233 0.97108 1.18240 0.87018 0.80855 0.78966 1.90744 1.65597 1.41338 1.46532 1.47961 1.08963 1.27383 1.47520 1.23127 0.96225 0.93263 0.91896 1.21847 0.84110 0.99117 0.94901 1.44395 1.01964 1.30555 1.56658 1.18683 1.11732 1.06696 1.02218 0.92941 1.25766 0.99462 0.96157 0.98847 1.70151 1.48123 1.13373 1.25177 0.86632 0.77557 0.82462 0.81087 1.22972 1.22128 1.16338 1.21471 0.95850 0.92293 0.89929 1.22166 0.78676 1.02682 0.98405 1.21382 0.90757 1.00647 1.09770 1.19233 0.88440 0.84174 0.90165 1.86310 1.21080 1.26886 1.87088 1.23166 0.75553 1.04727 1.02622 1.66681 1.41633 0.98412 1.25150 0.85701 0.92068 0.91900 0.82993 0.89699 0.86649 0.95027 0.91711 0.92730 0.95337 0.90232 0.88510 0.90397 0.81409 0.85816 0.91868 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.38 113.37 1.18 1.62 16 2 O -0.31 -6.45 10.47 -90.04 -0.94 -7.39 16 3 C 0.36 8.58 7.48 84.75 0.63 9.21 16 4 C -0.18 -4.79 9.64 22.75 0.22 -4.57 16 5 C -0.02 -0.50 5.39 -19.92 -0.11 -0.61 16 6 C 0.56 17.99 7.45 86.88 0.65 18.64 16 7 O -0.56 -20.78 16.27 -3.75 -0.06 -20.84 16 8 N -0.59 -18.83 2.94 -820.19 -2.41 -21.24 16 9 C 0.08 2.44 5.03 86.57 0.44 2.88 16 10 C 0.13 5.00 4.57 86.57 0.40 5.40 16 11 N -0.61 -27.23 2.64 -697.34 -1.84 -29.07 16 12 C -0.26 -14.13 9.82 84.03 0.83 -13.31 16 13 H 0.05 3.06 8.06 -2.91 -0.02 3.03 16 14 C 0.00 -0.21 4.82 84.86 0.41 0.20 16 15 N -0.93 -54.96 13.97 21.65 0.30 -54.66 16 16 Si 0.90 42.85 26.66 68.60 1.83 44.68 16 17 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 18 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 19 H -0.24 -10.65 4.91 99.48 0.49 -10.16 16 20 C 0.13 4.86 6.67 86.42 0.58 5.44 16 21 C 0.10 3.36 6.60 86.42 0.57 3.93 16 22 C -0.20 -5.01 7.40 22.75 0.17 -4.85 16 23 C 0.36 8.38 7.48 84.75 0.63 9.02 16 24 O -0.31 -6.40 10.47 -89.98 -0.94 -7.34 16 25 C 0.03 0.45 10.38 113.37 1.18 1.63 16 26 N -0.58 -13.15 8.02 -422.19 -3.39 -16.54 16 27 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.79 8.11 -2.39 -0.02 0.77 16 29 H 0.06 0.78 8.10 -2.38 -0.02 0.76 16 30 H 0.15 3.93 8.03 -2.91 -0.02 3.91 16 31 H 0.08 2.59 8.11 -2.39 -0.02 2.57 16 32 H 0.12 3.11 4.16 -2.39 -0.01 3.10 16 33 H 0.03 1.28 6.68 -2.39 -0.02 1.26 16 34 H 0.06 2.76 5.95 -2.39 -0.01 2.74 16 35 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 2.90 7.93 -2.39 -0.02 2.88 16 38 H 0.10 2.99 6.99 -2.39 -0.02 2.98 16 39 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.17 3.82 5.91 -2.91 -0.02 3.80 16 41 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.06 0.80 8.10 -2.39 -0.02 0.78 16 43 H 0.06 0.81 8.11 -2.39 -0.02 0.80 16 Total: -1.00 -67.69 348.79 1.13 -66.56 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.82 Total: 11.20 kcal Atomic # 6 Polarization: 26.87 SS G_CDS: 7.76 Total: 34.63 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -7.33 Total: -121.50 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.95 Total: -35.57 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.83 Total: 44.68 kcal Total: -67.69 1.13 -66.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949107208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.240 kcal (2) G-P(sol) polarization free energy of solvation -67.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds