Wall clock time and date at job start Tue Mar 31 2020 13:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 119.99707 * 2 1 4 4 N 1.34773 * 120.00555 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00411 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.47393 * 179.97438 * 5 4 2 7 7 C 1.35128 * 125.61804 * 89.99873 * 6 5 4 8 8 C 1.40362 * 107.12055 * 180.02562 * 7 6 5 9 9 C 1.36550 * 106.70555 * 359.97438 * 8 7 6 10 10 C 1.46656 * 125.98782 * 179.97438 * 9 8 7 11 11 O 1.21693 * 120.00188 * 353.40113 * 10 9 8 12 12 N 1.34777 * 119.99746 * 173.39995 * 10 9 8 13 13 C 1.46965 * 120.59801 * 4.55880 * 12 10 9 14 14 C 1.53365 * 108.63713 * 235.20459 * 13 12 10 15 15 N 1.46963 * 108.63762 * 310.57932 * 14 13 12 16 16 C 1.36939 * 120.59314 * 235.20377 * 15 14 13 17 17 H 1.07992 * 119.99736 * 148.55422 * 16 15 14 18 18 C 1.38813 * 119.99945 * 328.55541 * 16 15 14 19 19 N 1.31619 * 119.99909 * 350.14447 * 18 16 15 20 20 Si 1.86790 * 120.00054 * 170.14065 * 18 16 15 21 21 H 1.48501 * 109.47545 * 180.02562 * 20 18 16 22 22 H 1.48509 * 109.47281 * 299.99943 * 20 18 16 23 23 H 1.48500 * 109.47423 * 59.99981 * 20 18 16 24 24 C 1.46967 * 118.81040 * 55.47196 * 15 14 13 25 25 C 1.46964 * 120.58966 * 184.53797 * 12 10 9 26 26 O 1.33934 * 125.61610 * 270.29504 * 6 5 4 27 27 H 1.09002 * 109.47154 * 239.99828 * 1 2 3 28 28 H 1.08997 * 109.47771 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47040 * 120.00302 * 1 2 3 30 30 H 0.97000 * 119.99691 * 0.02562 * 4 2 1 31 31 H 1.09000 * 109.46850 * 60.00016 * 5 4 2 32 32 H 1.08994 * 109.47391 * 300.00031 * 5 4 2 33 33 H 1.08002 * 126.43788 * 0.02562 * 7 6 5 34 34 H 1.07992 * 126.65246 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.60963 * 115.46002 * 13 12 10 36 36 H 1.09001 * 109.60467 * 354.95365 * 13 12 10 37 37 H 1.08995 * 109.60870 * 190.82959 * 14 13 12 38 38 H 1.09004 * 109.60628 * 70.31837 * 14 13 12 39 39 H 0.96999 * 119.99927 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.60970 * 64.27578 * 24 15 14 41 41 H 1.09005 * 109.60641 * 184.77734 * 24 15 14 42 42 H 1.09004 * 109.60913 * 244.53605 * 25 12 10 43 43 H 1.08995 * 109.61357 * 5.05207 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1483 -2.5878 0.0022 7 6 4.4111 -3.3305 -1.0956 8 6 4.8542 -4.5853 -0.6493 9 6 4.8397 -4.5441 0.7155 10 6 5.2249 -5.6366 1.6148 11 8 5.4839 -6.7356 1.1610 12 7 5.2920 -5.4234 2.9439 13 6 4.8865 -4.1317 3.5158 14 6 6.0509 -3.5754 4.3445 15 7 6.5306 -4.6306 5.2480 16 6 6.5988 -4.4140 6.5984 17 1 6.4483 -5.2339 7.2850 18 6 6.8614 -3.1407 7.0847 19 7 7.2353 -2.1854 6.2600 20 14 6.6841 -2.7828 8.9094 21 1 7.0191 -1.3597 9.1697 22 1 5.2851 -3.0468 9.3321 23 1 7.6065 -3.6574 9.6773 24 6 6.9413 -5.9204 4.6756 25 6 5.7716 -6.4786 3.8474 26 8 4.4027 -3.3243 1.0916 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6960 -2.0072 0.0005 31 1 4.0088 -0.6530 0.8911 32 1 4.0096 -0.6535 -0.8888 33 1 4.3009 -3.0174 -2.1234 34 1 5.1501 -5.4212 -1.2657 35 1 4.0159 -4.2724 4.1564 36 1 4.6440 -3.4360 2.7124 37 1 5.7088 -2.7212 4.9287 38 1 6.8584 -3.2677 3.6802 39 1 7.4191 -1.2957 6.5999 40 1 7.8109 -5.7757 4.0344 41 1 7.1875 -6.6152 5.4786 42 1 4.9640 -6.7864 4.5117 43 1 6.1137 -7.3328 3.2632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951777607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:07 Heat of formation + Delta-G solvation = -11.849681 kcal Electronic energy + Delta-G solvation = -27309.542287 eV Core-core repulsion = 23358.112331 eV Total energy + Delta-G solvation = -3951.429956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.89808 -39.79927 -39.41519 -36.92668 -35.34283 -34.06598 -33.15473 -31.72113 -31.22381 -30.29089 -29.51108 -27.32179 -26.06370 -23.86184 -23.09785 -22.03311 -21.60935 -20.95960 -20.48752 -19.37655 -17.72561 -17.37239 -16.93577 -16.23225 -16.08958 -15.85157 -15.72035 -15.13470 -14.81663 -14.54184 -13.95854 -13.83967 -13.81637 -13.57782 -13.49585 -13.40242 -13.09195 -12.95100 -12.87324 -12.53148 -12.47567 -12.15495 -11.59426 -11.16025 -10.86790 -10.76811 -10.58842 -10.33850 -10.28459 -10.14547 -10.10746 -9.96730 -9.74490 -9.45952 -8.79993 -8.62524 -8.33663 -6.71704 -5.88428 -3.39595 0.94242 2.09437 2.35287 2.43588 3.09796 3.25140 3.32480 3.37180 3.38604 3.40572 4.25069 4.40648 4.53187 4.66288 4.77733 4.94097 5.01116 5.09734 5.21649 5.29643 5.30631 5.50608 5.53784 5.61536 5.67347 5.77528 5.83874 5.90152 5.98215 6.07578 6.17129 6.22944 6.36756 6.43953 6.71110 6.84968 6.85900 7.14040 7.16978 7.45404 7.66164 7.73136 7.89355 8.26725 8.34831 9.08938 9.69173 10.27299 11.18575 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.003875 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.072231 B = 7224.486918 C = 9319.168136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.512 3.488 3 O -0.544 6.544 4 N -0.730 5.730 5 C 0.198 3.802 6 C -0.026 4.026 7 C -0.190 4.190 8 C -0.133 4.133 9 C -0.046 4.046 10 C 0.589 3.411 11 O -0.539 6.539 12 N -0.582 5.582 13 C 0.063 3.937 14 C 0.160 3.840 15 N -0.592 5.592 16 C -0.259 4.259 17 H 0.067 0.933 18 C 0.007 3.993 19 N -0.905 5.905 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.283 1.283 23 H -0.281 1.281 24 C 0.131 3.869 25 C 0.095 3.905 26 O -0.140 6.140 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.405 0.595 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.023 0.977 39 H 0.257 0.743 40 H 0.025 0.975 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.881 -0.380 -14.405 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.421 6.421 4 N -0.384 5.384 5 C 0.075 3.925 6 C -0.077 4.077 7 C -0.210 4.210 8 C -0.154 4.154 9 C -0.098 4.098 10 C 0.376 3.624 11 O -0.420 6.420 12 N -0.312 5.312 13 C -0.060 4.060 14 C 0.033 3.967 15 N -0.314 5.314 16 C -0.388 4.388 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.738 3.262 21 H -0.215 1.215 22 H -0.209 1.209 23 H -0.208 1.208 24 C 0.003 3.997 25 C -0.029 4.029 26 O -0.036 6.036 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.240 0.760 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.041 0.959 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.274 0.100 -14.205 18.136 hybrid contribution -0.172 -0.180 0.789 0.827 sum -11.447 -0.080 -13.416 17.636 Atomic orbital electron populations 1.21918 0.91222 1.05719 1.04453 1.20846 0.90732 0.83096 0.75345 1.90757 1.70838 1.31303 1.49167 1.46130 1.06531 1.09400 1.76306 1.19654 0.80218 0.87616 1.04998 1.22727 1.04782 0.94849 0.85388 1.21602 1.06002 0.93896 0.99520 1.21897 1.01764 0.98888 0.92849 1.22373 1.07780 0.84955 0.94717 1.16795 0.78603 0.85410 0.81601 1.90822 1.52539 1.22662 1.75945 1.48053 1.61699 1.16347 1.05064 1.23324 1.00668 0.83380 0.98584 1.21213 0.91453 0.92693 0.91325 1.43987 1.73765 1.10190 1.03490 1.19163 1.43093 0.94828 0.81739 0.91554 1.25203 0.98660 0.97451 0.97927 1.69919 1.48523 1.02618 1.33774 0.86292 0.78100 0.77142 0.84715 1.21502 1.20880 1.20758 1.21417 0.92940 0.89708 0.95586 1.22428 0.98673 0.89697 0.92062 1.84382 1.64291 1.22191 1.32785 0.89132 0.88790 0.89324 0.76023 0.88972 0.88054 0.82666 0.82190 0.91555 0.88508 0.87707 0.95890 0.93288 0.95688 0.91195 0.91425 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.32 36.00 0.37 -0.60 16 2 C 0.51 4.99 7.94 -10.99 -0.09 4.90 16 3 O -0.54 -7.82 17.09 5.56 0.09 -7.73 16 4 N -0.73 -6.15 5.55 -61.48 -0.34 -6.49 16 5 C 0.20 1.95 6.20 -5.20 -0.03 1.92 16 6 C -0.03 -0.29 6.68 -35.42 -0.24 -0.53 16 7 C -0.19 -1.97 10.77 -39.89 -0.43 -2.40 16 8 C -0.13 -1.70 10.63 -39.39 -0.42 -2.12 16 9 C -0.05 -0.70 6.86 -36.80 -0.25 -0.95 16 10 C 0.59 10.61 7.66 -12.86 -0.10 10.51 16 11 O -0.54 -10.63 16.29 5.19 0.08 -10.55 16 12 N -0.58 -10.78 2.95 -173.77 -0.51 -11.29 16 13 C 0.06 1.18 6.49 -3.60 -0.02 1.16 16 14 C 0.16 3.68 5.46 -3.60 -0.02 3.66 16 15 N -0.59 -14.39 2.96 -171.77 -0.51 -14.90 16 16 C -0.26 -6.83 9.58 -15.06 -0.14 -6.98 16 17 H 0.07 1.71 7.85 -52.49 -0.41 1.29 16 18 C 0.01 0.18 5.07 -17.43 -0.09 0.09 16 19 N -0.90 -25.37 10.97 55.49 0.61 -24.76 16 20 Si 0.91 21.02 29.56 -169.99 -5.03 16.00 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.13 2.70 6.70 -3.37 -0.02 2.68 16 25 C 0.09 1.72 6.60 -3.37 -0.02 1.70 16 26 O -0.14 -1.99 7.06 4.97 0.04 -1.96 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.41 2.57 8.46 -40.82 -0.35 2.23 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.10 1.67 3.71 -55.56 -0.21 1.47 16 37 H 0.11 2.67 5.99 -51.93 -0.31 2.36 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.46 7.01 -51.93 -0.36 1.10 16 LS Contribution 359.35 15.07 5.42 5.42 Total: -1.00 -33.06 359.35 -7.49 -40.54 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.83 Total: 2.66 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: -1.50 Total: 13.06 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.75 Total: -57.44 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.21 Total: -20.23 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.06 -7.49 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951777607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.695 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds