Wall clock time and date at job start Tue Mar 31 2020 13:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 119.99707 * 2 1 4 4 N 1.34773 * 120.00555 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00411 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.47393 * 179.97438 * 5 4 2 7 7 C 1.35128 * 125.61804 * 89.99873 * 6 5 4 8 8 C 1.40362 * 107.12055 * 180.02562 * 7 6 5 9 9 C 1.36550 * 106.70555 * 359.97438 * 8 7 6 10 10 C 1.46656 * 125.98782 * 179.97438 * 9 8 7 11 11 O 1.21693 * 120.00188 * 353.40113 * 10 9 8 12 12 N 1.34777 * 119.99746 * 173.39995 * 10 9 8 13 13 C 1.46965 * 120.59801 * 4.55880 * 12 10 9 14 14 C 1.53365 * 108.63713 * 235.20459 * 13 12 10 15 15 N 1.46963 * 108.63762 * 310.57932 * 14 13 12 16 16 C 1.36939 * 120.59314 * 235.20377 * 15 14 13 17 17 H 1.07992 * 119.99736 * 148.55422 * 16 15 14 18 18 C 1.38813 * 119.99945 * 328.55541 * 16 15 14 19 19 N 1.31619 * 119.99909 * 350.14447 * 18 16 15 20 20 Si 1.86790 * 120.00054 * 170.14065 * 18 16 15 21 21 H 1.48501 * 109.47545 * 180.02562 * 20 18 16 22 22 H 1.48509 * 109.47281 * 299.99943 * 20 18 16 23 23 H 1.48500 * 109.47423 * 59.99981 * 20 18 16 24 24 C 1.46967 * 118.81040 * 55.47196 * 15 14 13 25 25 C 1.46964 * 120.58966 * 184.53797 * 12 10 9 26 26 O 1.33934 * 125.61610 * 270.29504 * 6 5 4 27 27 H 1.09002 * 109.47154 * 239.99828 * 1 2 3 28 28 H 1.08997 * 109.47771 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47040 * 120.00302 * 1 2 3 30 30 H 0.97000 * 119.99691 * 0.02562 * 4 2 1 31 31 H 1.09000 * 109.46850 * 60.00016 * 5 4 2 32 32 H 1.08994 * 109.47391 * 300.00031 * 5 4 2 33 33 H 1.08002 * 126.43788 * 0.02562 * 7 6 5 34 34 H 1.07992 * 126.65246 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.60963 * 115.46002 * 13 12 10 36 36 H 1.09001 * 109.60467 * 354.95365 * 13 12 10 37 37 H 1.08995 * 109.60870 * 190.82959 * 14 13 12 38 38 H 1.09004 * 109.60628 * 70.31837 * 14 13 12 39 39 H 0.96999 * 119.99927 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.60970 * 64.27578 * 24 15 14 41 41 H 1.09005 * 109.60641 * 184.77734 * 24 15 14 42 42 H 1.09004 * 109.60913 * 244.53605 * 25 12 10 43 43 H 1.08995 * 109.61357 * 5.05207 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1483 -2.5878 0.0022 7 6 4.4111 -3.3305 -1.0956 8 6 4.8542 -4.5853 -0.6493 9 6 4.8397 -4.5441 0.7155 10 6 5.2249 -5.6366 1.6148 11 8 5.4839 -6.7356 1.1610 12 7 5.2920 -5.4234 2.9439 13 6 4.8865 -4.1317 3.5158 14 6 6.0509 -3.5754 4.3445 15 7 6.5306 -4.6306 5.2480 16 6 6.5988 -4.4140 6.5984 17 1 6.4483 -5.2339 7.2850 18 6 6.8614 -3.1407 7.0847 19 7 7.2353 -2.1854 6.2600 20 14 6.6841 -2.7828 8.9094 21 1 7.0191 -1.3597 9.1697 22 1 5.2851 -3.0468 9.3321 23 1 7.6065 -3.6574 9.6773 24 6 6.9413 -5.9204 4.6756 25 6 5.7716 -6.4786 3.8474 26 8 4.4027 -3.3243 1.0916 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6960 -2.0072 0.0005 31 1 4.0088 -0.6530 0.8911 32 1 4.0096 -0.6535 -0.8888 33 1 4.3009 -3.0174 -2.1234 34 1 5.1501 -5.4212 -1.2657 35 1 4.0159 -4.2724 4.1564 36 1 4.6440 -3.4360 2.7124 37 1 5.7088 -2.7212 4.9287 38 1 6.8584 -3.2677 3.6802 39 1 7.4191 -1.2957 6.5999 40 1 7.8109 -5.7757 4.0344 41 1 7.1875 -6.6152 5.4786 42 1 4.9640 -6.7864 4.5117 43 1 6.1137 -7.3328 3.2632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951777607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:06 Heat of formation + Delta-G solvation = -34.963337 kcal Electronic energy + Delta-G solvation = -27310.544570 eV Core-core repulsion = 23358.112331 eV Total energy + Delta-G solvation = -3952.432239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.93627 -40.93031 -40.54222 -38.56469 -36.21874 -35.73894 -34.22160 -33.33896 -32.32528 -31.87810 -30.36264 -28.88539 -27.20503 -25.54248 -24.65338 -23.36561 -22.69804 -21.80229 -21.69552 -20.85870 -19.21998 -18.34817 -17.94434 -17.76552 -17.37303 -17.03435 -16.68606 -16.56556 -16.24317 -15.84519 -15.52551 -15.26114 -15.14206 -15.07638 -14.61897 -14.35556 -14.24654 -14.16518 -14.02860 -13.45545 -13.34262 -13.19109 -12.95044 -12.85396 -12.67254 -12.53095 -12.30174 -12.07235 -11.86332 -11.75256 -11.31172 -11.20004 -11.04638 -10.62621 -10.25741 -10.06988 -9.65810 -8.66280 -7.90346 -5.45558 -0.15369 1.15319 1.35889 1.48425 1.49627 1.56582 1.61707 1.90883 2.06400 2.39524 2.49197 3.22221 3.26048 3.50537 3.64368 3.85117 3.93385 4.12372 4.17481 4.24793 4.30058 4.39452 4.46979 4.52373 4.59389 4.60181 4.65967 4.70307 4.74613 4.84001 4.95112 5.06688 5.10027 5.24129 5.26970 5.33428 5.43875 5.56684 5.60125 5.81830 6.26886 6.34864 6.47608 6.86497 7.08170 7.18555 7.73864 8.28817 9.14105 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.003875 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.072231 B = 7224.486918 C = 9319.168136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.508 3.492 3 O -0.597 6.597 4 N -0.719 5.719 5 C 0.199 3.801 6 C -0.015 4.015 7 C -0.176 4.176 8 C -0.115 4.115 9 C -0.086 4.086 10 C 0.590 3.410 11 O -0.561 6.561 12 N -0.591 5.591 13 C 0.082 3.918 14 C 0.169 3.831 15 N -0.609 5.609 16 C -0.269 4.269 17 H 0.072 0.928 18 C -0.044 4.044 19 N -0.936 5.936 20 Si 0.973 3.027 21 H -0.295 1.295 22 H -0.274 1.274 23 H -0.276 1.276 24 C 0.130 3.870 25 C 0.105 3.895 26 O -0.159 6.159 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.418 0.582 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.193 0.807 34 H 0.173 0.827 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.078 0.922 38 H -0.006 1.006 39 H 0.252 0.748 40 H 0.011 0.989 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.685 -0.980 -15.725 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.298 3.702 3 O -0.478 6.478 4 N -0.373 5.373 5 C 0.076 3.924 6 C -0.066 4.066 7 C -0.195 4.195 8 C -0.135 4.135 9 C -0.138 4.138 10 C 0.380 3.620 11 O -0.443 6.443 12 N -0.321 5.321 13 C -0.041 4.041 14 C 0.043 3.957 15 N -0.333 5.333 16 C -0.399 4.399 17 H 0.090 0.910 18 C -0.240 4.240 19 N -0.581 5.581 20 Si 0.800 3.200 21 H -0.221 1.221 22 H -0.200 1.200 23 H -0.202 1.202 24 C 0.004 3.996 25 C -0.019 4.019 26 O -0.056 6.056 27 H 0.126 0.874 28 H 0.108 0.892 29 H 0.135 0.865 30 H 0.255 0.745 31 H 0.092 0.908 32 H 0.135 0.865 33 H 0.210 0.790 34 H 0.190 0.810 35 H 0.088 0.912 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.012 0.988 39 H 0.061 0.939 40 H 0.029 0.971 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.104 -0.567 -15.540 20.335 hybrid contribution 0.404 0.013 1.083 1.156 sum -12.700 -0.554 -14.457 19.251 Atomic orbital electron populations 1.21939 0.87745 1.06226 1.06567 1.21618 0.92352 0.82329 0.73918 1.90738 1.72156 1.33147 1.51789 1.46052 1.05898 1.09900 1.75455 1.19651 0.81245 0.86608 1.04905 1.23050 1.03695 0.94914 0.84945 1.21937 1.04424 0.92332 1.00836 1.22214 0.99515 0.99989 0.91809 1.21994 1.11433 0.85220 0.95124 1.17052 0.77683 0.85929 0.81372 1.90794 1.53527 1.23768 1.76202 1.48075 1.62317 1.16052 1.05642 1.23008 0.98488 0.83959 0.98646 1.20952 0.91932 0.92125 0.90725 1.44245 1.74392 1.11361 1.03290 1.19520 1.42313 0.95087 0.82939 0.91014 1.25948 0.98856 0.97361 1.01839 1.70097 1.49939 1.02674 1.35407 0.85273 0.78308 0.76406 0.79996 1.22125 1.20006 1.20161 1.21506 0.93594 0.88534 0.95965 1.22274 0.97846 0.89755 0.92010 1.84212 1.64948 1.22199 1.34280 0.87435 0.89173 0.86530 0.74503 0.90847 0.86518 0.79017 0.80980 0.91165 0.86796 0.90426 0.98807 0.93874 0.97095 0.90149 0.90402 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.32 71.23 0.74 -0.70 16 2 C 0.51 9.14 7.94 87.66 0.70 9.84 16 3 O -0.60 -17.07 17.09 -3.03 -0.05 -17.12 16 4 N -0.72 -10.64 5.55 -466.81 -2.59 -13.23 16 5 C 0.20 3.62 6.20 85.63 0.53 4.15 16 6 C -0.01 -0.30 6.68 24.97 0.17 -0.13 16 7 C -0.18 -3.03 10.77 22.07 0.24 -2.79 16 8 C -0.11 -2.63 10.63 22.39 0.24 -2.39 16 9 C -0.09 -2.54 6.86 24.07 0.17 -2.37 16 10 C 0.59 20.95 7.66 86.44 0.66 21.61 16 11 O -0.56 -21.71 16.29 -4.33 -0.07 -21.78 16 12 N -0.59 -21.80 2.95 -821.90 -2.42 -24.22 16 13 C 0.08 3.10 6.49 86.41 0.56 3.66 16 14 C 0.17 8.08 5.46 86.41 0.47 8.55 16 15 N -0.61 -30.24 2.96 -697.35 -2.06 -32.30 16 16 C -0.27 -14.34 9.58 84.03 0.81 -13.53 16 17 H 0.07 3.67 7.85 -2.91 -0.02 3.65 16 18 C -0.04 -2.41 5.07 84.86 0.43 -1.98 16 19 N -0.94 -54.08 10.97 21.65 0.24 -53.85 16 20 Si 0.97 43.60 29.56 68.60 2.03 45.63 16 21 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.13 5.44 6.70 86.56 0.58 6.02 16 25 C 0.10 3.75 6.60 86.56 0.57 4.32 16 26 O -0.16 -4.36 7.06 -5.12 -0.04 -4.39 16 27 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16 29 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.42 4.11 8.46 -92.71 -0.78 3.33 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.19 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.12 3.96 3.71 -59.82 -0.22 3.74 16 37 H 0.08 4.13 5.99 -2.39 -0.01 4.12 16 38 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.08 3.12 7.93 -2.38 -0.02 3.11 16 42 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.09 3.22 7.01 -2.39 -0.02 3.20 16 Total: -1.00 -73.56 359.35 1.93 -71.63 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.05 Total: 15.35 kcal Atomic # 6 Polarization: 27.41 SS G_CDS: 6.85 Total: 34.26 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -6.84 Total: -123.59 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -0.16 Total: -43.28 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -73.56 1.93 -71.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951777607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.664 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds