Wall clock time and date at job start Tue Mar 31 2020 13:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00473 * 2 1 4 4 C 1.50695 * 109.47185 * 180.02562 * 3 2 1 5 5 N 1.29936 * 125.37546 * 89.72547 * 4 3 2 6 6 C 1.36073 * 108.47734 * 179.87389 * 5 4 3 7 7 C 1.47411 * 126.45156 * 180.15193 * 6 5 4 8 8 O 1.21612 * 120.00048 * 180.26804 * 7 6 5 9 9 N 1.34783 * 120.00072 * 0.26805 * 7 6 5 10 10 C 1.46494 * 119.99875 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46995 * 180.02562 * 10 9 7 12 12 H 1.09003 * 115.51439 * 29.57986 * 11 10 9 13 13 C 1.53003 * 117.44469 * 244.24043 * 11 10 9 14 14 H 1.09006 * 119.53698 * 4.11825 * 13 11 10 15 15 C 1.57693 * 116.11340 * 161.63488 * 13 11 10 16 16 N 1.48144 * 104.66906 * 87.31073 * 15 13 11 17 17 C 1.36936 * 127.83696 * 139.77728 * 16 15 13 18 18 H 1.08000 * 120.00081 * 344.33588 * 17 16 15 19 19 C 1.38811 * 120.00382 * 164.32844 * 17 16 15 20 20 N 1.31626 * 120.00000 * 350.57583 * 19 17 16 21 21 Si 1.86795 * 120.00329 * 170.56912 * 19 17 16 22 22 H 1.48498 * 109.46969 * 60.00549 * 21 19 17 23 23 H 1.48502 * 109.47259 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47500 * 300.00720 * 21 19 17 25 25 C 1.48144 * 104.32776 * 319.76984 * 16 15 13 26 26 C 1.53002 * 117.44409 * 174.99918 * 11 10 9 27 27 H 1.09001 * 119.53924 * 355.88121 * 26 11 10 28 28 C 1.36096 * 107.09719 * 0.37754 * 6 5 4 29 29 O 1.34046 * 125.37762 * 270.02295 * 4 3 2 30 30 H 1.09002 * 109.46873 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46588 * 299.99691 * 1 2 3 32 32 H 1.09000 * 109.47111 * 59.99519 * 1 2 3 33 33 H 1.08997 * 109.47000 * 300.00625 * 3 2 1 34 34 H 1.08997 * 109.46637 * 59.99916 * 3 2 1 35 35 H 0.96995 * 119.99760 * 0.02562 * 9 7 6 36 36 H 1.09005 * 109.47669 * 299.99913 * 10 9 7 37 37 H 1.09001 * 109.47336 * 60.00032 * 10 9 7 38 38 H 1.08997 * 110.91855 * 328.23013 * 15 13 11 39 39 H 1.08998 * 109.93578 * 205.88891 * 15 13 11 40 40 H 0.96995 * 120.00143 * 179.97438 * 20 19 17 41 41 H 1.08995 * 110.41346 * 280.80612 * 25 16 15 42 42 H 1.08998 * 110.41033 * 158.37047 * 25 16 15 43 43 H 1.08000 * 126.52397 * 179.78905 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2616 1.1220 -1.0604 6 6 5.5601 1.0237 -0.6654 7 6 6.7387 0.9304 -1.5459 8 8 7.8519 0.8417 -1.0644 9 7 6.5826 0.9433 -2.8846 10 6 7.7538 0.8499 -3.7595 11 6 7.3028 0.8871 -5.2211 12 1 6.3886 1.4477 -5.4163 13 6 7.5591 -0.3597 -6.0701 14 1 7.9848 -1.2487 -5.6045 15 6 6.7140 -0.4825 -7.3958 16 7 7.5061 0.2454 -8.4144 17 6 7.7190 -0.1050 -9.7209 18 1 7.5082 -1.1114 -10.0513 19 6 8.2057 0.8332 -10.6208 20 7 8.2874 2.0996 -10.2714 21 14 8.7448 0.2986 -12.3275 22 1 7.5964 -0.3184 -13.0386 23 1 9.2217 1.4810 -13.0889 24 1 9.8452 -0.6918 -12.2115 25 6 8.0154 1.4384 -7.6989 26 6 8.3925 0.9191 -6.2947 27 1 9.4390 0.9829 -5.9965 28 6 5.5653 1.0228 0.6955 29 8 4.2866 1.1243 1.0920 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6887 1.8463 -0.8899 34 1 1.6887 1.8462 0.8900 35 1 5.6947 1.0144 -3.2686 36 1 8.4212 1.6893 -3.5642 37 1 8.2793 -0.0850 -3.5647 38 1 5.7334 -0.0218 -7.2763 39 1 6.6091 -1.5311 -7.6739 40 1 8.6278 2.7552 -10.9000 41 1 7.2382 2.1991 -7.6268 42 1 8.8942 1.8385 -8.2047 43 1 6.4330 0.9538 1.3349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978896750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:57 Heat of formation + Delta-G solvation = -16.562194 kcal Electronic energy + Delta-G solvation = -25692.297131 eV Core-core repulsion = 21740.662825 eV Total energy + Delta-G solvation = -3951.634306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.57468 -40.87553 -40.05961 -38.90978 -36.41416 -36.04731 -34.96986 -32.80196 -32.47587 -29.27544 -28.77846 -28.59310 -26.95061 -26.60527 -24.75972 -22.92785 -22.52142 -21.97533 -21.24283 -20.86117 -19.35498 -18.80579 -18.28626 -17.68512 -17.27698 -17.03302 -16.80097 -16.66345 -16.52542 -16.29388 -15.97693 -15.29848 -15.26377 -14.73908 -14.58758 -14.46192 -14.20192 -13.87446 -13.39017 -13.29310 -13.17887 -12.89333 -12.69017 -12.62350 -12.34188 -12.30885 -12.03403 -11.98513 -11.90993 -11.76381 -11.52388 -10.95228 -10.79246 -10.73047 -10.58756 -10.34521 -10.04351 -8.91423 -7.92037 -5.28438 -0.03988 0.69723 1.41215 1.46062 1.49655 1.56127 1.91825 2.12386 2.47676 2.54654 2.75580 3.18377 3.25429 3.58007 3.61669 3.69056 3.71029 3.86056 4.12013 4.17135 4.23447 4.25098 4.31347 4.40764 4.54001 4.55439 4.58278 4.62556 4.64174 4.69457 4.86938 4.91228 4.93003 5.00432 5.14685 5.32417 5.37675 5.44218 5.52141 5.66016 6.02018 6.17444 6.19020 6.48381 6.99204 7.00592 7.67810 8.46563 9.21690 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.002137 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.712713 B =13099.177061 C =14192.495305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.158 3.842 4 C 0.193 3.807 5 N -0.460 5.460 6 C -0.103 4.103 7 C 0.602 3.398 8 O -0.567 6.567 9 N -0.700 5.700 10 C 0.163 3.837 11 C -0.118 4.118 12 H 0.104 0.896 13 C -0.159 4.159 14 H 0.131 0.869 15 C 0.148 3.852 16 N -0.620 5.620 17 C -0.243 4.243 18 H 0.080 0.920 19 C -0.063 4.063 20 N -0.947 5.947 21 Si 0.981 3.019 22 H -0.274 1.274 23 H -0.293 1.293 24 H -0.277 1.277 25 C 0.189 3.811 26 C -0.173 4.173 27 H 0.116 0.884 28 C 0.044 3.956 29 O -0.188 6.188 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.416 0.584 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.028 0.972 39 H 0.055 0.945 40 H 0.250 0.750 41 H 0.001 0.999 42 H 0.053 0.947 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.879 -1.069 26.479 29.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C 0.081 3.919 4 C -0.017 4.017 5 N -0.192 5.192 6 C -0.223 4.223 7 C 0.388 3.612 8 O -0.447 6.447 9 N -0.351 5.351 10 C 0.040 3.960 11 C -0.137 4.137 12 H 0.122 0.878 13 C -0.178 4.178 14 H 0.149 0.851 15 C 0.023 3.977 16 N -0.344 5.344 17 C -0.371 4.371 18 H 0.098 0.902 19 C -0.257 4.257 20 N -0.595 5.595 21 Si 0.809 3.191 22 H -0.200 1.200 23 H -0.219 1.219 24 H -0.203 1.203 25 C 0.064 3.936 26 C -0.193 4.193 27 H 0.134 0.866 28 C -0.030 4.030 29 O -0.072 6.072 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.252 0.748 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.019 0.981 42 H 0.072 0.928 43 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -13.183 -1.219 25.916 29.102 hybrid contribution 0.204 0.221 -0.812 0.866 sum -12.980 -0.998 25.103 28.278 Atomic orbital electron populations 1.23030 0.77412 1.04400 1.01978 1.87905 1.22895 1.26817 1.95917 1.20847 0.78618 0.86485 1.05936 1.26354 0.96603 1.00670 0.78037 1.70715 1.01084 1.16420 1.30996 1.21730 0.91828 1.14794 0.93944 1.16869 0.86205 0.76045 0.82049 1.90810 1.25444 1.52546 1.75910 1.45774 1.11643 1.72542 1.05099 1.20801 0.87021 1.02605 0.85588 1.22419 1.00014 1.00831 0.90402 0.87768 1.24652 1.02898 0.92352 0.97915 0.85142 1.21871 0.92442 0.96158 0.87252 1.45456 1.56822 1.24901 1.07237 1.19345 1.38226 0.95314 0.84235 0.90191 1.25764 1.02806 0.95113 1.02028 1.70092 1.51791 1.01134 1.36485 0.85118 0.78379 0.76667 0.78947 1.19977 1.21924 1.20325 1.20815 0.96830 0.88303 0.87701 1.23880 0.96891 1.03127 0.95416 0.86638 1.25940 0.85499 0.96384 0.95202 1.84432 1.17051 1.68158 1.37608 0.88597 0.91558 0.92327 0.87025 0.86769 0.74775 0.90552 0.90676 0.95372 0.92624 0.94084 0.98086 0.92836 0.72089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.42 -6.06 10.69 -148.98 -1.59 -7.65 16 3 C 0.16 1.69 6.56 71.23 0.47 2.15 16 4 C 0.19 3.44 7.93 88.39 0.70 4.14 16 5 N -0.46 -10.36 11.06 -293.05 -3.24 -13.60 16 6 C -0.10 -2.36 6.99 40.40 0.28 -2.08 16 7 C 0.60 16.04 7.81 86.66 0.68 16.72 16 8 O -0.57 -17.64 16.89 -4.07 -0.07 -17.71 16 9 N -0.70 -17.66 5.55 -466.37 -2.59 -20.25 16 10 C 0.16 4.29 5.95 86.38 0.51 4.81 16 11 C -0.12 -3.55 5.34 -10.79 -0.06 -3.61 16 12 H 0.10 3.21 8.04 -2.39 -0.02 3.19 16 13 C -0.16 -5.41 7.03 -8.69 -0.06 -5.47 16 14 H 0.13 3.92 8.12 -2.38 -0.02 3.90 16 15 C 0.15 6.20 7.10 87.73 0.62 6.82 16 16 N -0.62 -32.58 3.38 -681.44 -2.30 -34.89 16 17 C -0.24 -13.80 10.35 84.03 0.87 -12.93 16 18 H 0.08 4.34 7.85 -2.91 -0.02 4.32 16 19 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 20 N -0.95 -57.52 10.88 21.65 0.24 -57.28 16 21 Si 0.98 45.88 29.56 68.60 2.03 47.91 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 C 0.19 9.41 5.70 86.54 0.49 9.90 16 26 C -0.17 -6.50 6.77 -9.88 -0.07 -6.57 16 27 H 0.12 4.05 8.14 -2.39 -0.02 4.03 16 28 C 0.04 0.74 11.95 67.32 0.80 1.55 16 29 O -0.19 -3.13 10.73 0.39 0.00 -3.12 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.42 9.81 8.13 -92.71 -0.75 9.05 16 36 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.08 1.98 7.94 -2.39 -0.02 1.96 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.05 16 42 H 0.05 3.02 6.53 -2.39 -0.02 3.00 16 43 H 0.26 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -75.45 370.34 -0.29 -75.74 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.28 Total: 17.16 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 6.95 Total: 13.69 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -7.90 Total: -126.01 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -1.66 Total: -28.49 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -75.45 -0.29 -75.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978896750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.181 kcal (2) G-P(sol) polarization free energy of solvation -75.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds