Wall clock time and date at job start Tue Mar 31 2020 13:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36936 * 120.00065 * 2 1 4 4 H 1.07992 * 120.00448 * 210.41753 * 3 2 1 5 5 C 1.38818 * 119.99703 * 30.42123 * 3 2 1 6 6 N 1.31614 * 120.00105 * 7.25416 * 5 3 2 7 7 Si 1.86804 * 119.99760 * 187.25521 * 5 3 2 8 8 H 1.48496 * 109.47004 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.46965 * 120.00033 * 7 5 3 10 10 H 1.48508 * 109.46820 * 239.99924 * 7 5 3 11 11 C 1.46495 * 119.99592 * 180.02562 * 2 1 3 12 12 C 1.53040 * 109.46188 * 299.99732 * 11 2 1 13 13 C 1.53191 * 109.31205 * 181.37668 * 12 11 2 14 14 N 1.46928 * 108.77491 * 305.36417 * 13 12 11 15 15 C 1.34773 * 120.63108 * 233.58406 * 14 13 12 16 16 O 1.21618 * 120.00229 * 183.04136 * 15 14 13 17 17 C 1.47292 * 120.00036 * 3.04877 * 15 14 13 18 18 C 1.36571 * 125.80667 * 172.72828 * 17 15 14 19 19 C 1.40058 * 106.92867 * 179.76599 * 18 17 15 20 20 C 1.36576 * 106.92111 * 0.37513 * 19 18 17 21 21 C 1.47296 * 125.80126 * 179.88813 * 20 19 18 22 22 N 1.34773 * 119.99506 * 179.71583 * 21 20 19 23 23 O 1.21612 * 120.00036 * 359.71602 * 21 20 19 24 24 O 1.34545 * 125.80416 * 352.72758 * 17 15 14 25 25 C 1.46926 * 118.74029 * 53.86358 * 14 13 12 26 26 C 1.53042 * 109.45021 * 60.06204 * 11 2 1 27 27 H 1.08997 * 109.46672 * 265.25978 * 1 2 3 28 28 H 1.09002 * 109.46773 * 25.25595 * 1 2 3 29 29 H 1.08994 * 109.47106 * 145.25357 * 1 2 3 30 30 H 0.97002 * 120.00133 * 180.02562 * 6 5 3 31 31 H 1.09005 * 109.45767 * 180.02562 * 11 2 1 32 32 H 1.08998 * 109.49258 * 61.42494 * 12 11 2 33 33 H 1.08997 * 109.52469 * 301.33915 * 12 11 2 34 34 H 1.08993 * 109.58908 * 185.57968 * 13 12 11 35 35 H 1.08997 * 109.70721 * 65.21687 * 13 12 11 36 36 H 1.08009 * 126.53615 * 0.03258 * 18 17 15 37 37 H 1.07993 * 126.54216 * 180.27682 * 19 18 17 38 38 H 0.97001 * 119.99965 * 180.02562 * 22 21 20 39 39 H 0.96999 * 120.00873 * 359.71676 * 22 21 20 40 40 H 1.08999 * 109.59047 * 65.92462 * 25 14 13 41 41 H 1.08996 * 109.59232 * 186.35563 * 25 14 13 42 42 H 1.08995 * 109.49721 * 298.56900 * 26 11 2 43 43 H 1.09001 * 109.49802 * 58.67137 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1182 1.2503 -0.4735 5 6 1.5990 2.3053 0.6088 6 7 0.4892 2.1952 1.3077 7 14 2.4329 3.9679 0.4359 8 1 3.6565 3.8240 -0.3932 9 1 1.5019 4.9232 -0.2165 10 1 2.8037 4.4778 1.7805 11 6 2.1975 -1.2687 -0.0006 12 6 1.8276 -2.0716 1.2487 13 6 2.6210 -3.3819 1.2622 14 7 2.3843 -4.0910 -0.0027 15 6 1.9580 -5.3695 -0.0039 16 8 1.8188 -5.9632 -1.0562 17 6 1.6605 -6.0478 1.2692 18 6 1.0930 -7.2829 1.4030 19 6 0.9964 -7.5407 2.7763 20 6 1.5012 -6.4483 3.4223 21 6 1.5971 -6.2788 4.8823 22 7 2.1234 -5.1495 5.3963 23 8 1.2014 -7.1577 5.6238 24 8 1.9015 -5.5560 2.4982 25 6 2.6273 -3.3818 -1.2664 26 6 1.8285 -2.0696 -1.2515 27 1 -0.3632 -0.0849 1.0241 28 1 -0.3633 0.9295 -0.4385 29 1 -0.3633 -0.8444 -0.5857 30 1 0.1041 2.9775 1.7328 31 1 3.2691 -1.0694 0.0000 32 1 0.7603 -2.2925 1.2363 33 1 2.0687 -1.4912 2.1393 34 1 2.2896 -4.0012 2.0956 35 1 3.6843 -3.1667 1.3669 36 1 0.7824 -7.9379 0.6024 37 1 0.5973 -8.4323 3.2366 38 1 2.1869 -5.0380 6.3578 39 1 2.4428 -4.4502 4.8049 40 1 3.6908 -3.1643 -1.3647 41 1 2.3000 -4.0008 -2.1017 42 1 0.7612 -2.2906 -1.2403 43 1 2.0708 -1.4876 -2.1407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985527471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:04 Heat of formation + Delta-G solvation = -19.412521 kcal Electronic energy + Delta-G solvation = -27621.168304 eV Core-core repulsion = 23669.410399 eV Total energy + Delta-G solvation = -3951.757905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.17526 -40.03018 -39.43463 -37.67469 -35.24332 -34.25428 -33.39912 -32.34460 -31.23760 -30.28094 -29.65523 -26.05349 -25.74807 -24.30444 -23.17466 -22.45597 -21.89158 -20.94182 -20.50463 -19.09379 -18.47832 -17.50267 -17.16783 -16.93052 -16.81423 -16.16923 -15.22686 -15.14345 -14.92356 -14.58423 -14.30272 -14.11416 -13.81350 -13.56737 -13.50676 -13.40754 -13.23363 -13.03989 -12.36807 -12.24594 -11.67084 -11.50907 -11.06242 -10.93177 -10.90379 -10.86963 -10.44300 -10.42695 -10.36906 -10.27042 -10.17022 -10.12208 -9.95195 -9.63875 -9.13410 -8.67184 -8.55854 -6.71656 -5.81851 -3.33123 0.36263 1.64489 2.01615 2.79401 2.81275 2.97887 3.16056 3.31535 3.39518 3.40853 4.14908 4.41355 4.48789 4.59699 4.94740 5.14330 5.18930 5.26530 5.28519 5.33364 5.40044 5.48094 5.60256 5.69689 5.81072 5.90554 6.00081 6.08586 6.17046 6.19049 6.29054 6.40481 6.41871 6.51656 6.76393 6.88692 6.90049 6.92795 7.24877 7.31013 7.63934 7.71593 7.74607 7.87893 8.38699 9.17897 9.79102 10.32668 11.24128 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.003437 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.445122 B = 8145.522815 C = 9467.423953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.593 5.593 3 C -0.260 4.260 4 H 0.065 0.935 5 C 0.009 3.991 6 N -0.904 5.904 7 Si 0.903 3.097 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.178 3.822 12 C -0.144 4.144 13 C 0.091 3.909 14 N -0.590 5.590 15 C 0.595 3.405 16 O -0.523 6.523 17 C -0.027 4.027 18 C -0.138 4.138 19 C -0.125 4.125 20 C -0.066 4.066 21 C 0.610 3.390 22 N -0.839 5.839 23 O -0.521 6.521 24 O -0.142 6.142 25 C 0.115 3.885 26 C -0.148 4.148 27 H 0.017 0.983 28 H 0.050 0.950 29 H -0.005 1.005 30 H 0.253 0.747 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.412 0.588 39 H 0.410 0.590 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.994 -15.525 3.334 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.314 5.314 3 C -0.389 4.389 4 H 0.083 0.917 5 C -0.191 4.191 6 N -0.548 5.548 7 Si 0.733 3.267 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.069 3.931 12 C -0.184 4.184 13 C -0.031 4.031 14 N -0.322 5.322 15 C 0.382 3.618 16 O -0.401 6.401 17 C -0.081 4.081 18 C -0.159 4.159 19 C -0.146 4.146 20 C -0.119 4.119 21 C 0.394 3.606 22 N -0.403 5.403 23 O -0.398 6.398 24 O -0.039 6.039 25 C -0.007 4.007 26 C -0.188 4.188 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.013 0.987 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.186 0.814 37 H 0.185 0.815 38 H 0.244 0.756 39 H 0.239 0.761 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.656 -15.989 3.245 16.719 hybrid contribution 0.386 1.375 0.226 1.447 sum 4.043 -14.613 3.472 15.555 Atomic orbital electron populations 1.20710 0.83062 0.97004 0.97450 1.43864 1.01579 1.00108 1.85879 1.19214 1.02959 0.87142 1.29628 0.91700 1.25201 0.97846 0.98993 0.97016 1.70028 1.20881 1.28636 1.35228 0.86220 0.78965 0.84210 0.77349 1.20228 1.21608 1.21625 1.20334 0.96153 0.86190 0.90383 1.22498 0.99878 0.93983 1.02036 1.22472 1.00928 0.94915 0.84756 1.48129 1.63823 1.11055 1.09172 1.16836 0.78028 0.81578 0.85392 1.90851 1.54298 1.65265 1.29708 1.22584 1.06201 0.95919 0.83410 1.21960 1.01118 0.95596 0.97187 1.21962 1.00693 0.99177 0.92733 1.22492 1.07599 0.91907 0.89930 1.16632 0.77435 0.82547 0.83967 1.43710 1.64338 1.19778 1.12435 1.90917 1.49017 1.41854 1.58027 1.84313 1.64689 1.40315 1.14621 1.21886 1.00246 0.93671 0.84892 1.22562 1.00229 0.94529 1.01434 0.96421 0.93072 0.98698 0.93716 0.91775 0.92127 0.90286 0.88432 0.90820 0.81351 0.81478 0.75636 0.76057 0.91027 0.89219 0.91841 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.83 8.10 59.85 0.48 4.31 16 2 N -0.59 -13.86 2.79 -173.43 -0.48 -14.35 16 3 C -0.26 -6.75 9.50 -15.06 -0.14 -6.89 16 4 H 0.07 1.66 7.84 -52.49 -0.41 1.24 16 5 C 0.01 0.23 5.14 -17.43 -0.09 0.14 16 6 N -0.90 -25.32 10.94 55.49 0.61 -24.71 16 7 Si 0.90 20.94 29.56 -169.99 -5.02 15.92 16 8 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.18 3.27 2.55 -67.89 -0.17 3.10 16 12 C -0.14 -2.31 5.34 -26.61 -0.14 -2.45 16 13 C 0.09 1.15 6.30 -3.71 -0.02 1.12 16 14 N -0.59 -8.05 2.97 -173.82 -0.52 -8.56 16 15 C 0.60 8.49 7.68 -12.58 -0.10 8.39 16 16 O -0.52 -8.61 16.29 5.26 0.09 -8.53 16 17 C -0.03 -0.34 6.86 -36.50 -0.25 -0.59 16 18 C -0.14 -1.51 10.60 -39.50 -0.42 -1.93 16 19 C -0.13 -1.29 10.60 -39.50 -0.42 -1.71 16 20 C -0.07 -0.72 7.14 -36.50 -0.26 -0.98 16 21 C 0.61 6.50 8.08 -12.58 -0.10 6.40 16 22 N -0.84 -6.07 8.87 30.40 0.27 -5.80 16 23 O -0.52 -7.08 17.70 5.27 0.09 -6.99 16 24 O -0.14 -1.58 6.82 4.37 0.03 -1.55 16 25 C 0.11 1.56 6.45 -3.48 -0.02 1.54 16 26 C -0.15 -2.36 5.31 -26.38 -0.14 -2.50 16 27 H 0.02 0.44 7.77 -51.93 -0.40 0.04 16 28 H 0.05 1.32 7.04 -51.93 -0.37 0.96 16 29 H -0.01 -0.11 6.48 -51.93 -0.34 -0.45 16 30 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.06 1.18 7.89 -51.93 -0.41 0.77 16 32 H 0.06 1.06 7.72 -51.93 -0.40 0.66 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.10 1.11 3.78 -55.31 -0.21 0.90 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.17 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.41 2.27 8.93 -40.82 -0.36 1.91 16 39 H 0.41 2.40 8.59 -40.82 -0.35 2.05 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.23 7.02 -51.93 -0.36 0.87 16 42 H 0.06 1.09 6.75 -51.93 -0.35 0.74 16 43 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -31.85 353.71 -7.04 -38.89 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.64 Total: 2.40 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -1.80 Total: 7.95 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.12 Total: -53.42 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.21 Total: -17.07 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.85 -7.04 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985527471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.480 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds