Wall clock time and date at job start Tue Mar 31 2020 13:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36936 * 120.00065 * 2 1 4 4 H 1.07992 * 120.00448 * 210.41753 * 3 2 1 5 5 C 1.38818 * 119.99703 * 30.42123 * 3 2 1 6 6 N 1.31614 * 120.00105 * 7.25416 * 5 3 2 7 7 Si 1.86804 * 119.99760 * 187.25521 * 5 3 2 8 8 H 1.48496 * 109.47004 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.46965 * 120.00033 * 7 5 3 10 10 H 1.48508 * 109.46820 * 239.99924 * 7 5 3 11 11 C 1.46495 * 119.99592 * 180.02562 * 2 1 3 12 12 C 1.53040 * 109.46188 * 299.99732 * 11 2 1 13 13 C 1.53191 * 109.31205 * 181.37668 * 12 11 2 14 14 N 1.46928 * 108.77491 * 305.36417 * 13 12 11 15 15 C 1.34773 * 120.63108 * 233.58406 * 14 13 12 16 16 O 1.21618 * 120.00229 * 183.04136 * 15 14 13 17 17 C 1.47292 * 120.00036 * 3.04877 * 15 14 13 18 18 C 1.36571 * 125.80667 * 172.72828 * 17 15 14 19 19 C 1.40058 * 106.92867 * 179.76599 * 18 17 15 20 20 C 1.36576 * 106.92111 * 0.37513 * 19 18 17 21 21 C 1.47296 * 125.80126 * 179.88813 * 20 19 18 22 22 N 1.34773 * 119.99506 * 179.71583 * 21 20 19 23 23 O 1.21612 * 120.00036 * 359.71602 * 21 20 19 24 24 O 1.34545 * 125.80416 * 352.72758 * 17 15 14 25 25 C 1.46926 * 118.74029 * 53.86358 * 14 13 12 26 26 C 1.53042 * 109.45021 * 60.06204 * 11 2 1 27 27 H 1.08997 * 109.46672 * 265.25978 * 1 2 3 28 28 H 1.09002 * 109.46773 * 25.25595 * 1 2 3 29 29 H 1.08994 * 109.47106 * 145.25357 * 1 2 3 30 30 H 0.97002 * 120.00133 * 180.02562 * 6 5 3 31 31 H 1.09005 * 109.45767 * 180.02562 * 11 2 1 32 32 H 1.08998 * 109.49258 * 61.42494 * 12 11 2 33 33 H 1.08997 * 109.52469 * 301.33915 * 12 11 2 34 34 H 1.08993 * 109.58908 * 185.57968 * 13 12 11 35 35 H 1.08997 * 109.70721 * 65.21687 * 13 12 11 36 36 H 1.08009 * 126.53615 * 0.03258 * 18 17 15 37 37 H 1.07993 * 126.54216 * 180.27682 * 19 18 17 38 38 H 0.97001 * 119.99965 * 180.02562 * 22 21 20 39 39 H 0.96999 * 120.00873 * 359.71676 * 22 21 20 40 40 H 1.08999 * 109.59047 * 65.92462 * 25 14 13 41 41 H 1.08996 * 109.59232 * 186.35563 * 25 14 13 42 42 H 1.08995 * 109.49721 * 298.56900 * 26 11 2 43 43 H 1.09001 * 109.49802 * 58.67137 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1182 1.2503 -0.4735 5 6 1.5990 2.3053 0.6088 6 7 0.4892 2.1952 1.3077 7 14 2.4329 3.9679 0.4359 8 1 3.6565 3.8240 -0.3932 9 1 1.5019 4.9232 -0.2165 10 1 2.8037 4.4778 1.7805 11 6 2.1975 -1.2687 -0.0006 12 6 1.8276 -2.0716 1.2487 13 6 2.6210 -3.3819 1.2622 14 7 2.3843 -4.0910 -0.0027 15 6 1.9580 -5.3695 -0.0039 16 8 1.8188 -5.9632 -1.0562 17 6 1.6605 -6.0478 1.2692 18 6 1.0930 -7.2829 1.4030 19 6 0.9964 -7.5407 2.7763 20 6 1.5012 -6.4483 3.4223 21 6 1.5971 -6.2788 4.8823 22 7 2.1234 -5.1495 5.3963 23 8 1.2014 -7.1577 5.6238 24 8 1.9015 -5.5560 2.4982 25 6 2.6273 -3.3818 -1.2664 26 6 1.8285 -2.0696 -1.2515 27 1 -0.3632 -0.0849 1.0241 28 1 -0.3633 0.9295 -0.4385 29 1 -0.3633 -0.8444 -0.5857 30 1 0.1041 2.9775 1.7328 31 1 3.2691 -1.0694 0.0000 32 1 0.7603 -2.2925 1.2363 33 1 2.0687 -1.4912 2.1393 34 1 2.2896 -4.0012 2.0956 35 1 3.6843 -3.1667 1.3669 36 1 0.7824 -7.9379 0.6024 37 1 0.5973 -8.4323 3.2366 38 1 2.1869 -5.0380 6.3578 39 1 2.4428 -4.4502 4.8049 40 1 3.6908 -3.1643 -1.3647 41 1 2.3000 -4.0008 -2.1017 42 1 0.7612 -2.2906 -1.2403 43 1 2.0708 -1.4876 -2.1407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985527471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:03 Heat of formation + Delta-G solvation = -41.934942 kcal Electronic energy + Delta-G solvation = -27622.144950 eV Core-core repulsion = 23669.410399 eV Total energy + Delta-G solvation = -3952.734551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.04928 -41.14347 -40.31640 -39.02556 -36.80586 -35.03764 -34.34883 -33.89015 -32.43659 -31.66146 -30.90930 -27.99749 -26.98036 -25.53489 -24.30794 -23.81866 -22.97190 -21.90751 -21.55121 -20.37378 -19.36642 -18.72965 -18.53296 -17.95927 -17.82725 -17.30297 -16.97350 -16.24603 -15.88819 -15.69077 -15.50367 -15.37215 -15.11067 -14.98441 -14.75347 -14.43804 -14.34286 -14.18975 -13.84816 -13.71974 -13.10805 -12.98149 -12.79241 -12.66413 -12.34363 -12.19875 -12.00973 -11.86497 -11.84275 -11.62747 -11.39261 -11.27415 -11.11681 -10.90751 -10.60121 -10.08677 -9.71169 -8.64473 -7.82856 -5.35784 -0.54219 0.76586 1.09202 1.47293 1.49927 1.59025 1.79403 1.94933 1.98175 2.37704 2.51687 3.20358 3.33716 3.61654 3.65692 3.81393 3.91947 4.08564 4.14049 4.22082 4.36013 4.36596 4.38924 4.58069 4.70717 4.74314 4.82087 4.91610 4.94219 4.99348 5.08613 5.11414 5.23066 5.31375 5.42642 5.50153 5.55960 5.68683 5.69043 5.71216 6.13954 6.21633 6.40537 6.79399 7.01796 7.18815 7.89155 8.37707 9.21706 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.003437 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.445122 B = 8145.522815 C = 9467.423953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.608 5.608 3 C -0.263 4.263 4 H 0.070 0.930 5 C -0.045 4.045 6 N -0.936 5.936 7 Si 0.964 3.036 8 H -0.265 1.265 9 H -0.296 1.296 10 H -0.292 1.292 11 C 0.172 3.828 12 C -0.132 4.132 13 C 0.102 3.898 14 N -0.593 5.593 15 C 0.597 3.403 16 O -0.549 6.549 17 C -0.049 4.049 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.066 4.066 21 C 0.610 3.390 22 N -0.820 5.820 23 O -0.554 6.554 24 O -0.140 6.140 25 C 0.122 3.878 26 C -0.135 4.135 27 H -0.005 1.005 28 H 0.020 0.980 29 H 0.018 0.982 30 H 0.247 0.753 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.182 0.818 37 H 0.184 0.816 38 H 0.422 0.578 39 H 0.419 0.581 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.443 -16.559 3.462 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.331 5.331 3 C -0.394 4.394 4 H 0.087 0.913 5 C -0.240 4.240 6 N -0.582 5.582 7 Si 0.793 3.207 8 H -0.189 1.189 9 H -0.223 1.223 10 H -0.219 1.219 11 C 0.065 3.935 12 C -0.172 4.172 13 C -0.020 4.020 14 N -0.323 5.323 15 C 0.385 3.615 16 O -0.429 6.429 17 C -0.102 4.102 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.119 4.119 21 C 0.394 3.606 22 N -0.384 5.384 23 O -0.434 6.434 24 O -0.037 6.037 25 C 0.000 4.000 26 C -0.175 4.175 27 H 0.013 0.987 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.199 0.801 37 H 0.201 0.799 38 H 0.256 0.744 39 H 0.250 0.750 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.151 -17.015 3.370 18.094 hybrid contribution -0.064 1.651 0.188 1.663 sum 5.088 -15.364 3.558 16.571 Atomic orbital electron populations 1.20385 0.83732 0.96221 0.96087 1.44075 1.01502 1.01368 1.86117 1.19547 1.02905 0.88301 1.28599 0.91256 1.25892 0.98597 1.02184 0.97365 1.70182 1.22372 1.29020 1.36639 0.85253 0.78229 0.80196 0.77050 1.18878 1.22283 1.21857 1.20557 0.95757 0.84762 0.92423 1.22267 0.99387 0.95385 1.00153 1.22433 1.01555 0.93006 0.84963 1.48174 1.63696 1.11092 1.09370 1.16974 0.77332 0.81528 0.85702 1.90834 1.55405 1.65877 1.30831 1.22335 1.08101 0.96580 0.83215 1.22198 0.99667 0.95039 0.97844 1.22210 1.00296 0.99637 0.92434 1.22653 1.07270 0.91978 0.90048 1.16635 0.77427 0.82892 0.83657 1.43612 1.62640 1.18831 1.13306 1.90908 1.50791 1.43145 1.58557 1.84221 1.64858 1.40374 1.14259 1.21820 1.00965 0.92085 0.85124 1.22371 0.99706 0.95489 0.99934 0.98715 0.96111 0.96406 0.94347 0.91463 0.93805 0.91530 0.86906 0.88581 0.80086 0.79867 0.74448 0.74987 0.88861 0.89117 0.93300 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.71 8.10 127.77 1.04 9.75 16 2 N -0.61 -28.49 2.79 -702.62 -1.96 -30.45 16 3 C -0.26 -13.63 9.50 84.04 0.80 -12.83 16 4 H 0.07 3.47 7.84 -2.91 -0.02 3.45 16 5 C -0.04 -2.40 5.14 84.86 0.44 -1.96 16 6 N -0.94 -53.58 10.94 21.65 0.24 -53.34 16 7 Si 0.96 43.20 29.56 68.60 2.03 45.23 16 8 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 9 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 10 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 11 C 0.17 6.14 2.55 45.02 0.11 6.26 16 12 C -0.13 -4.11 5.34 30.67 0.16 -3.94 16 13 C 0.10 2.32 6.30 86.36 0.54 2.87 16 14 N -0.59 -14.91 2.97 -822.10 -2.44 -17.35 16 15 C 0.60 15.96 7.68 86.62 0.67 16.62 16 16 O -0.55 -17.31 16.29 -4.09 -0.07 -17.37 16 17 C -0.05 -1.12 6.86 24.26 0.17 -0.95 16 18 C -0.13 -2.51 10.60 22.32 0.24 -2.28 16 19 C -0.13 -2.32 10.60 22.32 0.24 -2.09 16 20 C -0.07 -1.31 7.14 24.27 0.17 -1.13 16 21 C 0.61 11.92 8.08 86.63 0.70 12.62 16 22 N -0.82 -10.15 8.87 -175.99 -1.56 -11.71 16 23 O -0.55 -14.35 17.70 -4.07 -0.07 -14.42 16 24 O -0.14 -2.80 6.82 -7.28 -0.05 -2.85 16 25 C 0.12 3.05 6.45 86.51 0.56 3.61 16 26 C -0.14 -4.15 5.31 30.82 0.16 -3.99 16 27 H -0.01 -0.28 7.77 -2.39 -0.02 -0.30 16 28 H 0.02 1.08 7.04 -2.39 -0.02 1.07 16 29 H 0.02 0.75 6.48 -2.39 -0.02 0.74 16 30 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 31 H 0.07 2.37 7.89 -2.38 -0.02 2.35 16 32 H 0.04 1.51 7.72 -2.39 -0.02 1.49 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.11 2.29 3.78 -55.83 -0.21 2.08 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 38 H 0.42 3.80 8.93 -92.71 -0.83 2.97 16 39 H 0.42 3.88 8.59 -92.71 -0.80 3.08 16 40 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.09 2.32 7.02 -2.39 -0.02 2.30 16 42 H 0.05 1.64 6.75 -2.39 -0.02 1.62 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -68.72 353.71 1.36 -67.37 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -0.75 Total: 12.36 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: 5.99 Total: 22.54 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -5.72 Total: -112.85 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.19 Total: -34.65 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -68.72 1.36 -67.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985527471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.431 kcal (2) G-P(sol) polarization free energy of solvation -68.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds