Wall clock time and date at job start Tue Mar 31 2020 13:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 119.99606 * 2 1 4 4 H 1.08001 * 119.99968 * 204.37229 * 3 2 1 5 5 C 1.38815 * 120.00525 * 24.36731 * 3 2 1 6 6 N 1.31623 * 119.99257 * 15.45541 * 5 3 2 7 7 Si 1.86791 * 120.00314 * 195.45995 * 5 3 2 8 8 H 1.48502 * 109.47433 * 89.99924 * 7 5 3 9 9 H 1.48505 * 109.47171 * 210.00094 * 7 5 3 10 10 H 1.48501 * 109.46922 * 329.99625 * 7 5 3 11 11 C 1.46498 * 120.00364 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.45763 * 300.00271 * 11 2 1 13 13 C 1.53198 * 109.31259 * 181.38608 * 12 11 2 14 14 N 1.46926 * 108.88820 * 305.29200 * 13 12 11 15 15 C 1.34785 * 120.62711 * 233.67419 * 14 13 12 16 16 O 1.21592 * 119.99736 * 359.00640 * 15 14 13 17 17 C 1.47487 * 119.99573 * 179.00988 * 15 14 13 18 18 C 1.37811 * 126.77583 * 26.80039 * 17 15 14 19 19 O 1.33495 * 108.34157 * 179.86284 * 18 17 15 20 20 C 1.34883 * 109.89011 * 0.40369 * 19 18 17 21 21 C 1.46776 * 125.65635 * 179.74743 * 20 19 18 22 22 N 1.34775 * 120.00171 * 359.97438 * 21 20 19 23 23 O 1.21683 * 119.99860 * 179.97438 * 21 20 19 24 24 C 1.36059 * 108.68880 * 359.74721 * 20 19 18 25 25 C 1.47201 * 118.55861 * 53.54074 * 14 13 12 26 26 C 1.53038 * 109.45788 * 60.06707 * 11 2 1 27 27 H 1.09002 * 109.47555 * 272.56298 * 1 2 3 28 28 H 1.08996 * 109.47391 * 32.56945 * 1 2 3 29 29 H 1.09004 * 109.47138 * 152.56696 * 1 2 3 30 30 H 0.97007 * 119.99330 * 180.02562 * 6 5 3 31 31 H 1.08993 * 109.45279 * 180.02562 * 11 2 1 32 32 H 1.09002 * 109.49989 * 61.43202 * 12 11 2 33 33 H 1.09002 * 109.49938 * 301.33124 * 12 11 2 34 34 H 1.09002 * 109.58560 * 65.14963 * 13 12 11 35 35 H 1.08998 * 109.58687 * 185.43721 * 13 12 11 36 36 H 1.07999 * 125.82782 * 359.97029 * 18 17 15 37 37 H 0.97008 * 119.99487 * 359.97438 * 22 21 20 38 38 H 0.96998 * 120.00475 * 180.02562 * 22 21 20 39 39 H 1.07998 * 126.68813 * 180.02562 * 24 20 19 40 40 H 1.09004 * 109.53673 * 186.67147 * 25 14 13 41 41 H 1.09004 * 109.67776 * 66.36667 * 25 14 13 42 42 H 1.08998 * 109.49845 * 298.56534 * 26 11 2 43 43 H 1.08995 * 109.50035 * 58.66749 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1574 1.2277 -0.3860 5 6 1.5483 2.3346 0.4960 6 7 0.4626 2.2426 1.2345 7 14 2.2797 4.0107 0.1152 8 1 1.6825 4.5383 -1.1379 9 1 1.9884 4.9435 1.2334 10 1 3.7496 3.8827 -0.0524 11 6 2.1975 -1.2687 0.0006 12 6 1.8276 -2.0704 1.2506 13 6 2.6213 -3.3807 1.2654 14 7 2.3855 -4.0939 0.0027 15 6 1.9587 -5.3724 0.0057 16 8 1.7825 -5.9521 1.0599 17 6 1.7055 -6.0682 -1.2699 18 6 2.2984 -5.8041 -2.4856 19 8 1.8023 -6.6533 -3.3882 20 6 0.8940 -7.4629 -2.8060 21 6 0.1332 -8.5207 -3.4817 22 7 0.3168 -8.7475 -4.7975 23 8 -0.6633 -9.1931 -2.8538 24 6 0.7999 -7.1363 -1.4886 25 6 2.6226 -3.3810 -1.2631 26 6 1.8289 -2.0707 -1.2496 27 1 -0.3634 0.0460 1.0266 28 1 -0.3634 0.8660 -0.5532 29 1 -0.3633 -0.9121 -0.4735 30 1 0.0422 3.0453 1.5808 31 1 3.2690 -1.0691 0.0009 32 1 0.7603 -2.2917 1.2383 33 1 2.0689 -1.4889 2.1404 34 1 3.6843 -3.1628 1.3690 35 1 2.2917 -3.9981 2.1010 36 1 3.0394 -5.0417 -2.6752 37 1 0.9516 -8.2112 -5.2980 38 1 -0.1862 -9.4463 -5.2441 39 1 0.1602 -7.6007 -0.7528 40 1 2.2921 -3.9998 -2.0974 41 1 3.6855 -3.1633 -1.3682 42 1 0.7617 -2.2920 -1.2383 43 1 2.0711 -1.4896 -2.1393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985551712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:10 Heat of formation + Delta-G solvation = -14.871345 kcal Electronic energy + Delta-G solvation = -27161.355824 eV Core-core repulsion = 23209.794839 eV Total energy + Delta-G solvation = -3951.560985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.21791 -39.99508 -39.51048 -37.53913 -35.16277 -34.32894 -33.53060 -32.25811 -31.34690 -30.07623 -29.61247 -26.04421 -25.57183 -24.42071 -23.49612 -22.78625 -21.74895 -21.07115 -20.13401 -19.11192 -18.22373 -17.34057 -17.23646 -16.85989 -16.69848 -16.13812 -15.71294 -15.10084 -15.04951 -14.71791 -14.60414 -13.96034 -13.82897 -13.61159 -13.48756 -13.31769 -13.10986 -12.94437 -12.36266 -12.25726 -11.69145 -11.50934 -11.03243 -10.93274 -10.88773 -10.81571 -10.44929 -10.37862 -10.27273 -10.24679 -10.19305 -9.96289 -9.89398 -9.63610 -9.08254 -8.63214 -8.51908 -6.77256 -5.76658 -3.23334 0.57136 1.36971 2.16379 2.69756 2.79673 3.13488 3.20962 3.35061 3.41540 3.43124 4.16435 4.23364 4.44943 4.49769 4.79549 5.01718 5.13844 5.16543 5.27136 5.31859 5.36674 5.44603 5.53103 5.71682 5.80497 5.82159 5.94454 6.09333 6.12643 6.18612 6.30317 6.31991 6.48100 6.54839 6.74718 6.82018 6.92628 6.96592 7.31189 7.39881 7.67188 7.68195 7.76696 8.13696 8.37132 9.19374 9.83334 10.33804 11.28298 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.002689 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.072269 B =10410.904338 C =10842.825139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.594 5.594 3 C -0.259 4.259 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.179 3.821 12 C -0.145 4.145 13 C 0.115 3.885 14 N -0.598 5.598 15 C 0.584 3.416 16 O -0.538 6.538 17 C -0.227 4.227 18 C 0.033 3.967 19 O -0.155 6.155 20 C -0.094 4.094 21 C 0.613 3.387 22 N -0.844 5.844 23 O -0.519 6.519 24 C -0.061 4.061 25 C 0.085 3.915 26 C -0.148 4.148 27 H 0.027 0.973 28 H 0.040 0.960 29 H -0.001 1.001 30 H 0.253 0.747 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.236 0.764 37 H 0.407 0.593 38 H 0.410 0.590 39 H 0.170 0.830 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.711 -17.851 -12.606 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.315 5.315 3 C -0.388 4.388 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.071 3.929 12 C -0.186 4.186 13 C -0.007 4.007 14 N -0.331 5.331 15 C 0.372 3.628 16 O -0.416 6.416 17 C -0.232 4.232 18 C -0.039 4.039 19 O -0.049 6.049 20 C -0.145 4.145 21 C 0.397 3.603 22 N -0.407 5.407 23 O -0.396 6.396 24 C -0.082 4.082 25 C -0.038 4.038 26 C -0.188 4.188 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.251 0.749 37 H 0.237 0.763 38 H 0.242 0.758 39 H 0.188 0.812 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.096 -18.351 -11.712 22.152 hybrid contribution 0.368 1.235 -0.434 1.360 sum 4.464 -17.116 -12.145 21.457 Atomic orbital electron populations 1.20719 0.82941 0.95684 0.98969 1.43937 1.01660 1.00182 1.85738 1.19184 0.99292 0.85645 1.34701 0.91494 1.25043 0.98310 0.98583 0.97599 1.70081 1.21971 1.27477 1.35156 0.86285 0.78637 0.84305 0.77464 1.21532 1.21802 1.20486 1.20286 0.96055 0.86106 0.90484 1.22522 1.00051 0.94302 1.01685 1.21750 1.00005 0.93742 0.85221 1.48069 1.65526 1.11121 1.08375 1.17221 0.77051 0.81213 0.87284 1.90789 1.52650 1.65994 1.32133 1.20755 1.04763 1.02563 0.95077 1.25843 0.99027 0.92826 0.86216 1.83924 1.44617 1.37777 1.38559 1.21777 0.99836 0.99596 0.93286 1.16478 0.80745 0.80969 0.82081 1.43666 1.46662 1.40655 1.09732 1.90958 1.35441 1.47782 1.65452 1.21885 0.97330 0.94239 0.94736 1.22521 1.00760 0.94845 0.85674 1.22479 1.00250 0.94422 1.01648 0.95490 0.94150 0.98243 0.93721 0.91823 0.92178 0.90383 0.91423 0.89439 0.74881 0.76348 0.75846 0.81227 0.89446 0.90683 0.91782 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 8.07 59.85 0.48 4.34 16 2 N -0.59 -14.01 2.80 -173.44 -0.49 -14.50 16 3 C -0.26 -6.78 9.55 -15.06 -0.14 -6.93 16 4 H 0.07 1.71 7.85 -52.49 -0.41 1.29 16 5 C 0.00 0.10 5.02 -17.43 -0.09 0.01 16 6 N -0.90 -25.87 10.96 55.49 0.61 -25.26 16 7 Si 0.90 21.26 29.58 -169.99 -5.03 16.23 16 8 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 C 0.18 3.31 2.55 -67.89 -0.17 3.13 16 12 C -0.15 -2.54 5.34 -26.61 -0.14 -2.69 16 13 C 0.11 1.68 6.42 -3.71 -0.02 1.66 16 14 N -0.60 -8.06 2.98 -173.78 -0.52 -8.58 16 15 C 0.58 8.58 7.67 -12.49 -0.10 8.48 16 16 O -0.54 -9.80 16.44 5.29 0.09 -9.72 16 17 C -0.23 -2.69 5.79 -104.95 -0.61 -3.30 16 18 C 0.03 0.27 9.90 30.58 0.30 0.57 16 19 O -0.15 -1.27 10.33 6.20 0.06 -1.21 16 20 C -0.09 -0.96 7.09 -36.92 -0.26 -1.22 16 21 C 0.61 6.09 8.06 -12.81 -0.10 5.98 16 22 N -0.84 -4.55 8.87 30.28 0.27 -4.28 16 23 O -0.52 -7.09 17.68 5.20 0.09 -7.00 16 24 C -0.06 -0.74 10.51 -39.03 -0.41 -1.15 16 25 C 0.08 0.92 5.50 -3.56 -0.02 0.90 16 26 C -0.15 -2.17 5.32 -26.61 -0.14 -2.32 16 27 H 0.03 0.71 7.46 -51.93 -0.39 0.32 16 28 H 0.04 1.04 7.33 -51.93 -0.38 0.66 16 29 H 0.00 -0.02 6.46 -51.93 -0.34 -0.35 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.06 1.17 7.87 -51.93 -0.41 0.76 16 32 H 0.06 1.14 7.72 -51.93 -0.40 0.74 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.36 7.01 -51.93 -0.36 1.00 16 36 H 0.24 1.11 5.77 -52.49 -0.30 0.80 16 37 H 0.41 1.26 8.57 -40.82 -0.35 0.91 16 38 H 0.41 1.53 8.93 -40.82 -0.36 1.16 16 39 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.09 0.73 3.32 -51.93 -0.17 0.56 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.03 6.72 -51.93 -0.35 0.68 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -34.55 351.69 -6.51 -41.06 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.48 Total: 0.46 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -1.42 Total: 7.49 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.13 Total: -52.62 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.24 Total: -17.93 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.55 -6.51 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985551712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.190 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds