Wall clock time and date at job start Tue Mar 31 2020 13:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36937 * 119.99606 * 2 1 4 4 H 1.08001 * 119.99968 * 204.37229 * 3 2 1 5 5 C 1.38815 * 120.00525 * 24.36731 * 3 2 1 6 6 N 1.31623 * 119.99257 * 15.45541 * 5 3 2 7 7 Si 1.86791 * 120.00314 * 195.45995 * 5 3 2 8 8 H 1.48502 * 109.47433 * 89.99924 * 7 5 3 9 9 H 1.48505 * 109.47171 * 210.00094 * 7 5 3 10 10 H 1.48501 * 109.46922 * 329.99625 * 7 5 3 11 11 C 1.46498 * 120.00364 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.45763 * 300.00271 * 11 2 1 13 13 C 1.53198 * 109.31259 * 181.38608 * 12 11 2 14 14 N 1.46926 * 108.88820 * 305.29200 * 13 12 11 15 15 C 1.34785 * 120.62711 * 233.67419 * 14 13 12 16 16 O 1.21592 * 119.99736 * 359.00640 * 15 14 13 17 17 C 1.47487 * 119.99573 * 179.00988 * 15 14 13 18 18 C 1.37811 * 126.77583 * 26.80039 * 17 15 14 19 19 O 1.33495 * 108.34157 * 179.86284 * 18 17 15 20 20 C 1.34883 * 109.89011 * 0.40369 * 19 18 17 21 21 C 1.46776 * 125.65635 * 179.74743 * 20 19 18 22 22 N 1.34775 * 120.00171 * 359.97438 * 21 20 19 23 23 O 1.21683 * 119.99860 * 179.97438 * 21 20 19 24 24 C 1.36059 * 108.68880 * 359.74721 * 20 19 18 25 25 C 1.47201 * 118.55861 * 53.54074 * 14 13 12 26 26 C 1.53038 * 109.45788 * 60.06707 * 11 2 1 27 27 H 1.09002 * 109.47555 * 272.56298 * 1 2 3 28 28 H 1.08996 * 109.47391 * 32.56945 * 1 2 3 29 29 H 1.09004 * 109.47138 * 152.56696 * 1 2 3 30 30 H 0.97007 * 119.99330 * 180.02562 * 6 5 3 31 31 H 1.08993 * 109.45279 * 180.02562 * 11 2 1 32 32 H 1.09002 * 109.49989 * 61.43202 * 12 11 2 33 33 H 1.09002 * 109.49938 * 301.33124 * 12 11 2 34 34 H 1.09002 * 109.58560 * 65.14963 * 13 12 11 35 35 H 1.08998 * 109.58687 * 185.43721 * 13 12 11 36 36 H 1.07999 * 125.82782 * 359.97029 * 18 17 15 37 37 H 0.97008 * 119.99487 * 359.97438 * 22 21 20 38 38 H 0.96998 * 120.00475 * 180.02562 * 22 21 20 39 39 H 1.07998 * 126.68813 * 180.02562 * 24 20 19 40 40 H 1.09004 * 109.53673 * 186.67147 * 25 14 13 41 41 H 1.09004 * 109.67776 * 66.36667 * 25 14 13 42 42 H 1.08998 * 109.49845 * 298.56534 * 26 11 2 43 43 H 1.08995 * 109.50035 * 58.66749 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1574 1.2277 -0.3860 5 6 1.5483 2.3346 0.4960 6 7 0.4626 2.2426 1.2345 7 14 2.2797 4.0107 0.1152 8 1 1.6825 4.5383 -1.1379 9 1 1.9884 4.9435 1.2334 10 1 3.7496 3.8827 -0.0524 11 6 2.1975 -1.2687 0.0006 12 6 1.8276 -2.0704 1.2506 13 6 2.6213 -3.3807 1.2654 14 7 2.3855 -4.0939 0.0027 15 6 1.9587 -5.3724 0.0057 16 8 1.7825 -5.9521 1.0599 17 6 1.7055 -6.0682 -1.2699 18 6 2.2984 -5.8041 -2.4856 19 8 1.8023 -6.6533 -3.3882 20 6 0.8940 -7.4629 -2.8060 21 6 0.1332 -8.5207 -3.4817 22 7 0.3168 -8.7475 -4.7975 23 8 -0.6633 -9.1931 -2.8538 24 6 0.7999 -7.1363 -1.4886 25 6 2.6226 -3.3810 -1.2631 26 6 1.8289 -2.0707 -1.2496 27 1 -0.3634 0.0460 1.0266 28 1 -0.3634 0.8660 -0.5532 29 1 -0.3633 -0.9121 -0.4735 30 1 0.0422 3.0453 1.5808 31 1 3.2690 -1.0691 0.0009 32 1 0.7603 -2.2917 1.2383 33 1 2.0689 -1.4889 2.1404 34 1 3.6843 -3.1628 1.3690 35 1 2.2917 -3.9981 2.1010 36 1 3.0394 -5.0417 -2.6752 37 1 0.9516 -8.2112 -5.2980 38 1 -0.1862 -9.4463 -5.2441 39 1 0.1602 -7.6007 -0.7528 40 1 2.2921 -3.9998 -2.0974 41 1 3.6855 -3.1633 -1.3682 42 1 0.7617 -2.2920 -1.2383 43 1 2.0711 -1.4896 -2.1393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985551712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:09 Heat of formation + Delta-G solvation = -41.369004 kcal Electronic energy + Delta-G solvation = -27162.504848 eV Core-core repulsion = 23209.794839 eV Total energy + Delta-G solvation = -3952.710010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.99880 -41.12330 -40.31632 -38.93044 -36.73970 -35.06598 -34.44190 -33.82207 -32.47658 -31.52372 -30.75175 -28.01413 -26.89787 -25.27166 -24.81037 -23.94817 -23.07758 -21.95781 -21.18691 -20.25291 -19.17647 -18.76745 -18.08902 -17.96168 -17.59496 -17.16860 -16.90681 -16.69814 -16.19578 -15.73119 -15.53703 -15.39749 -15.15602 -15.00514 -14.64817 -14.54467 -14.32864 -13.96431 -13.90147 -13.68170 -13.10515 -12.98726 -12.80530 -12.61762 -12.35504 -12.19100 -12.04420 -11.81696 -11.73910 -11.58456 -11.33513 -11.21380 -11.06439 -10.87522 -10.59102 -9.88909 -9.70146 -8.73190 -7.80270 -5.28803 -0.17716 0.45807 1.40218 1.49084 1.50137 1.58649 1.74266 1.92933 2.17840 2.48517 2.53618 3.27311 3.33274 3.56291 3.62779 3.72903 3.85961 4.07601 4.15212 4.19738 4.31025 4.38236 4.40751 4.55141 4.65416 4.70841 4.76285 4.84072 4.88636 4.92726 5.01164 5.12437 5.22536 5.36237 5.42861 5.51258 5.59836 5.69477 5.69960 5.74269 6.26110 6.32877 6.37283 7.03706 7.08963 7.17423 7.90800 8.36857 9.23297 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.002689 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.072269 B =10410.904338 C =10842.825139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.609 5.609 3 C -0.258 4.258 4 H 0.078 0.922 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.966 3.034 8 H -0.288 1.288 9 H -0.302 1.302 10 H -0.263 1.263 11 C 0.172 3.828 12 C -0.134 4.134 13 C 0.125 3.875 14 N -0.597 5.597 15 C 0.583 3.417 16 O -0.585 6.585 17 C -0.258 4.258 18 C 0.074 3.926 19 O -0.135 6.135 20 C -0.088 4.088 21 C 0.610 3.390 22 N -0.816 5.816 23 O -0.566 6.566 24 C -0.086 4.086 25 C 0.089 3.911 26 C -0.138 4.138 27 H -0.007 1.007 28 H 0.013 0.987 29 H 0.026 0.974 30 H 0.245 0.755 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.280 0.720 37 H 0.422 0.578 38 H 0.421 0.579 39 H 0.150 0.850 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.047 0.953 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.389 -18.410 -16.053 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.331 5.331 3 C -0.388 4.388 4 H 0.096 0.904 5 C -0.252 4.252 6 N -0.587 5.587 7 Si 0.795 3.205 8 H -0.215 1.215 9 H -0.229 1.229 10 H -0.188 1.188 11 C 0.066 3.934 12 C -0.174 4.174 13 C 0.002 3.998 14 N -0.328 5.328 15 C 0.373 3.627 16 O -0.467 6.467 17 C -0.262 4.262 18 C 0.001 3.999 19 O -0.028 6.028 20 C -0.139 4.139 21 C 0.395 3.605 22 N -0.380 5.380 23 O -0.447 6.447 24 C -0.108 4.108 25 C -0.032 4.032 26 C -0.178 4.178 27 H 0.011 0.989 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.295 0.705 37 H 0.254 0.746 38 H 0.254 0.746 39 H 0.168 0.832 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.065 0.935 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.829 -18.932 -15.257 25.255 hybrid contribution -0.436 1.364 0.593 1.550 sum 6.392 -17.568 -14.663 23.759 Atomic orbital electron populations 1.20379 0.83735 0.95673 0.96718 1.44194 1.01550 1.01574 1.85749 1.19603 0.99539 0.86631 1.33002 0.90418 1.25829 0.99107 1.02068 0.98173 1.70259 1.23760 1.27682 1.37049 0.85271 0.78674 0.79993 0.76536 1.21491 1.22936 1.18772 1.20577 0.95880 0.84549 0.92438 1.22320 0.99079 0.95609 1.00440 1.21541 1.00623 0.91728 0.85884 1.48117 1.65029 1.10873 1.08815 1.17596 0.76010 0.81350 0.87713 1.90762 1.54634 1.67177 1.34124 1.20522 1.06865 1.03576 0.95279 1.26480 0.97293 0.91770 0.84332 1.83970 1.43702 1.37187 1.37896 1.21635 0.99936 0.99767 0.92585 1.16516 0.80298 0.80593 0.83118 1.43478 1.46052 1.40340 1.08122 1.90942 1.37537 1.49462 1.66728 1.21854 0.98129 0.95199 0.95569 1.22756 1.02399 0.92820 0.85228 1.22307 0.99912 0.95919 0.99623 0.98897 0.96792 0.95515 0.94558 0.91065 0.94500 0.92911 0.88967 0.90865 0.70547 0.74559 0.74570 0.83208 0.86306 0.86927 0.93457 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.82 8.07 127.77 1.03 9.85 16 2 N -0.61 -28.60 2.80 -702.65 -1.97 -30.56 16 3 C -0.26 -13.35 9.55 84.03 0.80 -12.55 16 4 H 0.08 3.80 7.85 -2.91 -0.02 3.78 16 5 C -0.06 -3.10 5.02 84.86 0.43 -2.68 16 6 N -0.94 -55.65 10.96 21.65 0.24 -55.41 16 7 Si 0.97 43.84 29.58 68.60 2.03 45.87 16 8 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 9 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 10 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 11 C 0.17 6.07 2.55 45.02 0.11 6.19 16 12 C -0.13 -4.72 5.34 30.67 0.16 -4.55 16 13 C 0.13 3.52 6.42 86.36 0.55 4.07 16 14 N -0.60 -14.60 2.98 -821.97 -2.45 -17.05 16 15 C 0.58 16.42 7.67 86.68 0.66 17.09 16 16 O -0.59 -21.79 16.44 -4.00 -0.07 -21.86 16 17 C -0.26 -5.55 5.79 -20.08 -0.12 -5.67 16 18 C 0.07 0.85 9.90 67.72 0.67 1.52 16 19 O -0.13 -1.62 10.33 -0.73 -0.01 -1.63 16 20 C -0.09 -1.62 7.09 24.00 0.17 -1.45 16 21 C 0.61 11.25 8.06 86.48 0.70 11.94 16 22 N -0.82 -6.55 8.87 -176.32 -1.56 -8.11 16 23 O -0.57 -15.52 17.68 -4.29 -0.08 -15.60 16 24 C -0.09 -2.05 10.51 22.63 0.24 -1.81 16 25 C 0.09 1.49 5.50 86.31 0.47 1.97 16 26 C -0.14 -3.60 5.32 30.67 0.16 -3.44 16 27 H -0.01 -0.40 7.46 -2.39 -0.02 -0.42 16 28 H 0.01 0.72 7.33 -2.39 -0.02 0.70 16 29 H 0.03 1.13 6.46 -2.39 -0.02 1.11 16 30 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 31 H 0.07 2.42 7.87 -2.39 -0.02 2.40 16 32 H 0.04 1.44 7.72 -2.39 -0.02 1.42 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.07 2.31 7.01 -2.39 -0.02 2.29 16 36 H 0.28 0.53 5.77 -2.91 -0.02 0.51 16 37 H 0.42 1.00 8.57 -92.70 -0.79 0.21 16 38 H 0.42 2.06 8.93 -92.71 -0.83 1.23 16 39 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 40 H 0.12 1.24 3.32 -2.38 -0.01 1.23 16 41 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.05 1.41 6.72 -2.39 -0.02 1.39 16 43 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -80.60 351.69 1.64 -78.95 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -0.54 Total: 4.92 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 6.05 Total: 20.49 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -5.75 Total: -111.14 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.15 Total: -39.08 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -80.60 1.64 -78.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985551712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.586 kcal (2) G-P(sol) polarization free energy of solvation -80.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds