Wall clock time and date at job start Tue Mar 31 2020 13:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 119.99713 * 2 1 4 4 H 1.08003 * 119.99855 * 197.46536 * 3 2 1 5 5 C 1.38809 * 120.00395 * 17.46464 * 3 2 1 6 6 N 1.31625 * 119.99934 * 23.66766 * 5 3 2 7 7 Si 1.86802 * 120.00195 * 203.66706 * 5 3 2 8 8 H 1.48503 * 109.47075 * 94.99171 * 7 5 3 9 9 H 1.48497 * 109.47191 * 214.99072 * 7 5 3 10 10 H 1.48493 * 109.47233 * 334.99086 * 7 5 3 11 11 C 1.46498 * 120.00057 * 179.97438 * 2 1 3 12 12 C 1.53035 * 109.46066 * 300.00386 * 11 2 1 13 13 C 1.53193 * 109.31290 * 181.37207 * 12 11 2 14 14 N 1.46923 * 108.77448 * 305.36338 * 13 12 11 15 15 C 1.34772 * 120.63394 * 233.58310 * 14 13 12 16 16 O 1.21682 * 120.00170 * 7.45104 * 15 14 13 17 17 C 1.46775 * 120.00224 * 187.45142 * 15 14 13 18 18 C 1.36059 * 125.65443 * 186.18169 * 17 15 14 19 19 C 1.41738 * 106.62519 * 179.97438 * 18 17 15 20 20 C 1.47490 * 126.77172 * 179.97438 * 19 18 17 21 21 N 1.34770 * 119.99878 * 179.97438 * 20 19 18 22 22 O 1.21599 * 119.99810 * 359.97438 * 20 19 18 23 23 C 1.37808 * 106.45100 * 0.23689 * 19 18 17 24 24 O 1.33499 * 108.34046 * 359.60472 * 23 19 18 25 25 C 1.46933 * 118.73688 * 53.86063 * 14 13 12 26 26 C 1.53041 * 109.44869 * 60.06657 * 11 2 1 27 27 H 1.08992 * 109.47497 * 271.51462 * 1 2 3 28 28 H 1.09005 * 109.47142 * 31.51798 * 1 2 3 29 29 H 1.09004 * 109.47164 * 151.51100 * 1 2 3 30 30 H 0.96999 * 119.99794 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46044 * 180.02562 * 11 2 1 32 32 H 1.08998 * 109.49985 * 61.41933 * 12 11 2 33 33 H 1.08999 * 109.52479 * 301.33645 * 12 11 2 34 34 H 1.09001 * 109.58700 * 185.57808 * 13 12 11 35 35 H 1.08996 * 109.70352 * 65.21991 * 13 12 11 36 36 H 1.08001 * 126.68865 * 359.93904 * 18 17 15 37 37 H 0.97001 * 119.99942 * 359.97438 * 21 20 19 38 38 H 0.96998 * 120.00546 * 179.72611 * 21 20 19 39 39 H 1.07993 * 125.82720 * 179.72660 * 23 19 18 40 40 H 1.09000 * 109.58263 * 65.92789 * 25 14 13 41 41 H 1.08997 * 109.58514 * 186.34718 * 25 14 13 42 42 H 1.09003 * 109.49550 * 298.57676 * 26 11 2 43 43 H 1.09002 * 109.49832 * 58.66400 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1923 1.2075 -0.2807 5 6 1.5036 2.3604 0.3608 6 7 0.4329 2.3145 1.1250 7 14 2.1537 4.0060 -0.2383 8 1 1.4302 4.4044 -1.4725 9 1 1.9428 5.0337 0.8126 10 1 3.6046 3.8880 -0.5313 11 6 2.1975 -1.2687 0.0006 12 6 1.8276 -2.0705 1.2505 13 6 2.6210 -3.3809 1.2651 14 7 2.3844 -4.0910 0.0008 15 6 1.9581 -5.3695 0.0006 16 8 1.6357 -5.9035 1.0454 17 6 1.8825 -6.1178 -1.2598 18 6 1.3609 -7.3652 -1.4115 19 6 1.4924 -7.6957 -2.7835 20 6 1.0694 -8.9499 -3.4341 21 7 1.2610 -9.1207 -4.7571 22 8 0.5477 -9.8299 -2.7767 23 6 2.0990 -6.6162 -3.3886 24 8 2.3181 -5.6826 -2.4599 25 6 2.6274 -3.3827 -1.2634 26 6 1.8287 -2.0706 -1.2497 27 1 -0.3634 0.0272 1.0272 28 1 -0.3634 0.8761 -0.5373 29 1 -0.3634 -0.9033 -0.4902 30 1 -0.0187 3.1352 1.3768 31 1 3.2691 -1.0693 0.0009 32 1 0.7603 -2.2915 1.2383 33 1 2.0686 -1.4894 2.1406 34 1 2.2895 -3.9994 2.0991 35 1 3.6843 -3.1655 1.3698 36 1 0.9310 -7.9834 -0.6373 37 1 1.6768 -8.4185 -5.2816 38 1 0.9865 -9.9471 -5.1844 39 1 2.3518 -6.5381 -4.4355 40 1 3.6910 -3.1653 -1.3618 41 1 2.3003 -4.0026 -2.0982 42 1 0.7613 -2.2916 -1.2384 43 1 2.0708 -1.4893 -2.1393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985642545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:07 Heat of formation + Delta-G solvation = -20.625384 kcal Electronic energy + Delta-G solvation = -27140.588859 eV Core-core repulsion = 23188.778360 eV Total energy + Delta-G solvation = -3951.810499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.22934 -39.94220 -39.45642 -37.62602 -35.21120 -34.28789 -33.33571 -32.33019 -31.20942 -30.17964 -29.55284 -26.04617 -25.35358 -24.50034 -23.51928 -22.76477 -21.70051 -21.10841 -20.13147 -19.15887 -18.13686 -17.21512 -17.14343 -16.85544 -16.72356 -16.25107 -15.90750 -15.05754 -15.03119 -14.72658 -14.38583 -14.04132 -13.87910 -13.69447 -13.49132 -13.27149 -13.10835 -13.01571 -12.36058 -12.25975 -11.65848 -11.54607 -11.03846 -10.94258 -10.78607 -10.59513 -10.45949 -10.40537 -10.33259 -10.22793 -10.17502 -10.09510 -9.86068 -9.62464 -9.17741 -8.60667 -8.48732 -6.85376 -5.78931 -3.14549 0.62863 1.25527 2.18732 2.83532 2.88716 3.08629 3.15718 3.36783 3.44293 3.45668 4.05751 4.19174 4.46118 4.47617 4.88520 5.09482 5.16609 5.21113 5.30059 5.32048 5.38544 5.42514 5.64661 5.72177 5.80588 5.85114 6.03266 6.08134 6.18986 6.27441 6.30822 6.35882 6.47950 6.55291 6.73431 6.84623 6.91910 6.95602 7.31162 7.32616 7.62780 7.78752 7.81697 7.96452 8.33350 9.18301 9.84935 10.32986 11.27875 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.002638 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.103611 B =10613.204791 C =11137.504107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.594 5.594 3 C -0.258 4.258 4 H 0.071 0.929 5 C 0.002 3.998 6 N -0.899 5.899 7 Si 0.897 3.103 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.279 1.279 11 C 0.179 3.821 12 C -0.146 4.146 13 C 0.114 3.886 14 N -0.594 5.594 15 C 0.597 3.403 16 O -0.523 6.523 17 C -0.066 4.066 18 C -0.072 4.072 19 C -0.243 4.243 20 C 0.594 3.406 21 N -0.852 5.852 22 O -0.534 6.534 23 C 0.034 3.966 24 O -0.140 6.140 25 C 0.099 3.901 26 C -0.146 4.146 27 H 0.022 0.978 28 H 0.045 0.955 29 H 0.001 0.999 30 H 0.252 0.748 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.170 0.830 37 H 0.399 0.601 38 H 0.407 0.593 39 H 0.217 0.783 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.127 -18.376 -12.926 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.316 5.316 3 C -0.387 4.387 4 H 0.088 0.912 5 C -0.197 4.197 6 N -0.543 5.543 7 Si 0.727 3.273 8 H -0.216 1.216 9 H -0.220 1.220 10 H -0.205 1.205 11 C 0.070 3.930 12 C -0.186 4.186 13 C -0.008 4.008 14 N -0.326 5.326 15 C 0.384 3.616 16 O -0.401 6.401 17 C -0.117 4.117 18 C -0.093 4.093 19 C -0.248 4.248 20 C 0.380 3.620 21 N -0.416 5.416 22 O -0.411 6.411 23 C -0.039 4.039 24 O -0.034 6.034 25 C -0.023 4.023 26 C -0.186 4.186 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.019 0.981 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.188 0.812 37 H 0.228 0.772 38 H 0.239 0.761 39 H 0.234 0.766 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.662 -18.611 -11.710 22.477 hybrid contribution 0.245 0.935 -0.916 1.332 sum 4.906 -17.676 -12.626 22.269 Atomic orbital electron populations 1.20722 0.82845 0.96167 0.98703 1.44024 1.01731 1.00266 1.85548 1.19217 0.95708 0.84287 1.39520 0.91166 1.24842 0.98480 0.98025 0.98362 1.70171 1.22448 1.26703 1.34975 0.86347 0.78379 0.84234 0.78320 1.21620 1.21963 1.20472 1.20280 0.96065 0.86019 0.90602 1.22525 1.00116 0.94264 1.01707 1.21814 1.00144 0.93947 0.84891 1.48096 1.64465 1.10998 1.09032 1.16672 0.78148 0.81405 0.85330 1.90879 1.49810 1.69142 1.30290 1.22125 1.08463 0.96432 0.84681 1.21835 0.97707 0.94072 0.95721 1.20599 1.11485 0.97302 0.95369 1.17250 0.77526 0.85432 0.81841 1.43653 1.65971 1.22873 1.09065 1.90863 1.43114 1.43295 1.63846 1.25178 0.97076 0.86668 0.94972 1.84233 1.63227 1.39358 1.16578 1.22345 1.00700 0.94444 0.84823 1.22556 1.00095 0.94458 1.01510 0.95935 0.93654 0.98085 0.93758 0.91782 0.92057 0.90313 0.89295 0.91177 0.81216 0.77229 0.76125 0.76643 0.91000 0.88664 0.91893 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 8.11 59.85 0.49 4.33 16 2 N -0.59 -14.14 2.82 -173.44 -0.49 -14.63 16 3 C -0.26 -6.82 9.59 -15.06 -0.14 -6.97 16 4 H 0.07 1.81 7.84 -52.48 -0.41 1.40 16 5 C 0.00 0.05 4.84 -17.43 -0.08 -0.04 16 6 N -0.90 -25.86 11.09 55.49 0.62 -25.25 16 7 Si 0.90 21.33 29.62 -169.99 -5.03 16.30 16 8 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 C 0.18 3.36 2.55 -67.89 -0.17 3.19 16 12 C -0.15 -2.56 5.34 -26.61 -0.14 -2.70 16 13 C 0.11 1.67 6.44 -3.71 -0.02 1.65 16 14 N -0.59 -8.40 2.97 -174.01 -0.52 -8.92 16 15 C 0.60 8.89 7.65 -12.81 -0.10 8.79 16 16 O -0.52 -9.26 16.28 5.20 0.08 -9.17 16 17 C -0.07 -0.81 6.76 -36.92 -0.25 -1.06 16 18 C -0.07 -0.87 10.42 -39.03 -0.41 -1.27 16 19 C -0.24 -2.25 6.16 -104.95 -0.65 -2.90 16 20 C 0.59 5.65 8.09 -12.49 -0.10 5.55 16 21 N -0.85 -3.73 8.86 30.45 0.27 -3.46 16 22 O -0.53 -7.56 17.77 5.28 0.09 -7.46 16 23 C 0.03 0.21 11.64 30.58 0.36 0.57 16 24 O -0.14 -1.31 7.13 6.20 0.04 -1.26 16 25 C 0.10 1.23 6.14 -3.49 -0.02 1.21 16 26 C -0.15 -2.27 5.33 -26.39 -0.14 -2.41 16 27 H 0.02 0.59 7.67 -51.93 -0.40 0.19 16 28 H 0.04 1.18 7.01 -51.93 -0.36 0.81 16 29 H 0.00 0.01 6.46 -51.93 -0.34 -0.32 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.06 1.20 7.83 -51.93 -0.41 0.80 16 32 H 0.06 1.16 7.72 -51.93 -0.40 0.76 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.09 1.35 7.00 -51.93 -0.36 0.98 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.17 2.15 8.06 -52.49 -0.42 1.72 16 37 H 0.40 0.35 7.78 -40.82 -0.32 0.03 16 38 H 0.41 1.37 8.93 -40.82 -0.36 1.00 16 39 H 0.22 0.16 7.46 -52.49 -0.39 -0.24 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.04 4.18 -53.50 -0.22 0.82 16 42 H 0.06 1.05 6.72 -51.93 -0.35 0.70 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -35.17 352.44 -6.59 -41.76 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.58 Total: -1.14 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -1.39 Total: 7.94 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.12 Total: -52.26 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.22 Total: -17.90 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.17 -6.59 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985642545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.130 kcal (2) G-P(sol) polarization free energy of solvation -35.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds