Wall clock time and date at job start Tue Mar 31 2020 13:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 119.99713 * 2 1 4 4 H 1.08003 * 119.99855 * 197.46536 * 3 2 1 5 5 C 1.38809 * 120.00395 * 17.46464 * 3 2 1 6 6 N 1.31625 * 119.99934 * 23.66766 * 5 3 2 7 7 Si 1.86802 * 120.00195 * 203.66706 * 5 3 2 8 8 H 1.48503 * 109.47075 * 94.99171 * 7 5 3 9 9 H 1.48497 * 109.47191 * 214.99072 * 7 5 3 10 10 H 1.48493 * 109.47233 * 334.99086 * 7 5 3 11 11 C 1.46498 * 120.00057 * 179.97438 * 2 1 3 12 12 C 1.53035 * 109.46066 * 300.00386 * 11 2 1 13 13 C 1.53193 * 109.31290 * 181.37207 * 12 11 2 14 14 N 1.46923 * 108.77448 * 305.36338 * 13 12 11 15 15 C 1.34772 * 120.63394 * 233.58310 * 14 13 12 16 16 O 1.21682 * 120.00170 * 7.45104 * 15 14 13 17 17 C 1.46775 * 120.00224 * 187.45142 * 15 14 13 18 18 C 1.36059 * 125.65443 * 186.18169 * 17 15 14 19 19 C 1.41738 * 106.62519 * 179.97438 * 18 17 15 20 20 C 1.47490 * 126.77172 * 179.97438 * 19 18 17 21 21 N 1.34770 * 119.99878 * 179.97438 * 20 19 18 22 22 O 1.21599 * 119.99810 * 359.97438 * 20 19 18 23 23 C 1.37808 * 106.45100 * 0.23689 * 19 18 17 24 24 O 1.33499 * 108.34046 * 359.60472 * 23 19 18 25 25 C 1.46933 * 118.73688 * 53.86063 * 14 13 12 26 26 C 1.53041 * 109.44869 * 60.06657 * 11 2 1 27 27 H 1.08992 * 109.47497 * 271.51462 * 1 2 3 28 28 H 1.09005 * 109.47142 * 31.51798 * 1 2 3 29 29 H 1.09004 * 109.47164 * 151.51100 * 1 2 3 30 30 H 0.96999 * 119.99794 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46044 * 180.02562 * 11 2 1 32 32 H 1.08998 * 109.49985 * 61.41933 * 12 11 2 33 33 H 1.08999 * 109.52479 * 301.33645 * 12 11 2 34 34 H 1.09001 * 109.58700 * 185.57808 * 13 12 11 35 35 H 1.08996 * 109.70352 * 65.21991 * 13 12 11 36 36 H 1.08001 * 126.68865 * 359.93904 * 18 17 15 37 37 H 0.97001 * 119.99942 * 359.97438 * 21 20 19 38 38 H 0.96998 * 120.00546 * 179.72611 * 21 20 19 39 39 H 1.07993 * 125.82720 * 179.72660 * 23 19 18 40 40 H 1.09000 * 109.58263 * 65.92789 * 25 14 13 41 41 H 1.08997 * 109.58514 * 186.34718 * 25 14 13 42 42 H 1.09003 * 109.49550 * 298.57676 * 26 11 2 43 43 H 1.09002 * 109.49832 * 58.66400 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1923 1.2075 -0.2807 5 6 1.5036 2.3604 0.3608 6 7 0.4329 2.3145 1.1250 7 14 2.1537 4.0060 -0.2383 8 1 1.4302 4.4044 -1.4725 9 1 1.9428 5.0337 0.8126 10 1 3.6046 3.8880 -0.5313 11 6 2.1975 -1.2687 0.0006 12 6 1.8276 -2.0705 1.2505 13 6 2.6210 -3.3809 1.2651 14 7 2.3844 -4.0910 0.0008 15 6 1.9581 -5.3695 0.0006 16 8 1.6357 -5.9035 1.0454 17 6 1.8825 -6.1178 -1.2598 18 6 1.3609 -7.3652 -1.4115 19 6 1.4924 -7.6957 -2.7835 20 6 1.0694 -8.9499 -3.4341 21 7 1.2610 -9.1207 -4.7571 22 8 0.5477 -9.8299 -2.7767 23 6 2.0990 -6.6162 -3.3886 24 8 2.3181 -5.6826 -2.4599 25 6 2.6274 -3.3827 -1.2634 26 6 1.8287 -2.0706 -1.2497 27 1 -0.3634 0.0272 1.0272 28 1 -0.3634 0.8761 -0.5373 29 1 -0.3634 -0.9033 -0.4902 30 1 -0.0187 3.1352 1.3768 31 1 3.2691 -1.0693 0.0009 32 1 0.7603 -2.2915 1.2383 33 1 2.0686 -1.4894 2.1406 34 1 2.2895 -3.9994 2.0991 35 1 3.6843 -3.1655 1.3698 36 1 0.9310 -7.9834 -0.6373 37 1 1.6768 -8.4185 -5.2816 38 1 0.9865 -9.9471 -5.1844 39 1 2.3518 -6.5381 -4.4355 40 1 3.6910 -3.1653 -1.3618 41 1 2.3003 -4.0026 -2.0982 42 1 0.7613 -2.2916 -1.2384 43 1 2.0708 -1.4893 -2.1393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985642545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:06 Heat of formation + Delta-G solvation = -47.713034 kcal Electronic energy + Delta-G solvation = -27141.763467 eV Core-core repulsion = 23188.778360 eV Total energy + Delta-G solvation = -3952.985108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.99551 -41.09367 -40.20640 -39.02628 -36.80850 -34.97817 -34.15584 -33.90728 -32.45506 -31.58943 -30.71381 -28.03140 -26.72822 -25.23230 -24.75153 -24.08748 -23.00571 -21.99577 -21.11846 -20.30793 -19.09581 -18.73957 -18.01604 -17.81915 -17.64747 -17.15043 -16.91829 -16.83970 -16.08332 -15.75836 -15.55826 -15.36010 -15.17976 -14.90104 -14.80884 -14.57256 -14.42472 -13.92297 -13.77047 -13.74280 -13.16413 -13.03127 -12.87065 -12.59904 -12.35916 -12.18239 -12.05095 -11.80134 -11.67308 -11.45295 -11.37719 -11.25236 -11.13006 -10.72280 -10.54103 -10.03098 -9.66036 -8.82988 -7.84019 -5.21347 -0.11692 0.44732 1.37094 1.48600 1.50781 1.59316 1.85162 1.98572 2.28961 2.51136 2.54077 3.28791 3.34328 3.44635 3.60324 3.81416 3.93179 4.10046 4.15665 4.23171 4.31503 4.37486 4.44079 4.55073 4.64033 4.72266 4.80575 4.89616 4.94262 4.95839 4.97664 5.11174 5.21138 5.33836 5.47012 5.56995 5.59855 5.64505 5.70718 5.86504 6.22788 6.32338 6.43516 6.85182 7.14905 7.29750 7.90256 8.34329 9.21704 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.002638 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.103611 B =10613.204791 C =11137.504107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.609 5.609 3 C -0.258 4.258 4 H 0.079 0.921 5 C -0.057 4.057 6 N -0.937 5.937 7 Si 0.962 3.038 8 H -0.290 1.290 9 H -0.302 1.302 10 H -0.264 1.264 11 C 0.172 3.828 12 C -0.134 4.134 13 C 0.123 3.877 14 N -0.596 5.596 15 C 0.595 3.405 16 O -0.564 6.564 17 C -0.087 4.087 18 C -0.081 4.081 19 C -0.270 4.270 20 C 0.592 3.408 21 N -0.823 5.823 22 O -0.595 6.595 23 C 0.091 3.909 24 O -0.138 6.138 25 C 0.107 3.893 26 C -0.134 4.134 27 H -0.009 1.009 28 H 0.019 0.981 29 H 0.028 0.972 30 H 0.246 0.754 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.148 0.852 37 H 0.421 0.579 38 H 0.416 0.584 39 H 0.283 0.717 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.049 0.951 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.373 -19.010 -16.777 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.331 5.331 3 C -0.388 4.388 4 H 0.096 0.904 5 C -0.252 4.252 6 N -0.584 5.584 7 Si 0.791 3.209 8 H -0.217 1.217 9 H -0.229 1.229 10 H -0.188 1.188 11 C 0.066 3.934 12 C -0.175 4.175 13 C 0.001 3.999 14 N -0.327 5.327 15 C 0.385 3.615 16 O -0.446 6.446 17 C -0.137 4.137 18 C -0.102 4.102 19 C -0.274 4.274 20 C 0.379 3.621 21 N -0.387 5.387 22 O -0.476 6.476 23 C 0.018 3.982 24 O -0.032 6.032 25 C -0.015 4.015 26 C -0.174 4.174 27 H 0.009 0.991 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.166 0.834 37 H 0.253 0.747 38 H 0.248 0.752 39 H 0.298 0.702 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.068 0.932 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.967 -19.248 -15.645 25.764 hybrid contribution -0.426 1.032 0.172 1.129 sum 6.541 -18.216 -15.473 24.780 Atomic orbital electron populations 1.20405 0.83480 0.96140 0.96658 1.44277 1.01697 1.01549 1.85532 1.19607 0.96091 0.85325 1.37771 0.90356 1.25614 0.99249 1.01298 0.99029 1.70323 1.24223 1.26945 1.36880 0.85321 0.78502 0.79996 0.77121 1.21679 1.22947 1.18828 1.20551 0.95792 0.84583 0.92519 1.22317 0.99293 0.95510 1.00361 1.21642 1.00734 0.92061 0.85479 1.48145 1.64265 1.10973 1.09277 1.16959 0.77197 0.81463 0.85925 1.90850 1.51530 1.70030 1.32159 1.21383 1.11072 0.96279 0.84986 1.21856 0.97289 0.93988 0.97092 1.20597 1.13726 0.98704 0.94382 1.17352 0.76974 0.84805 0.83016 1.43408 1.64224 1.23779 1.07306 1.90841 1.46163 1.45136 1.65496 1.26331 0.91905 0.83758 0.96191 1.84161 1.63084 1.39996 1.15926 1.22434 1.01554 0.92781 0.84692 1.22367 0.99792 0.95628 0.99609 0.99096 0.96257 0.95337 0.94478 0.91278 0.94107 0.92461 0.90110 0.88901 0.83411 0.74710 0.75183 0.70167 0.88607 0.86347 0.93235 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.76 8.11 127.77 1.04 9.80 16 2 N -0.61 -29.02 2.82 -702.64 -1.98 -30.99 16 3 C -0.26 -13.56 9.59 84.03 0.81 -12.76 16 4 H 0.08 3.92 7.84 -2.91 -0.02 3.90 16 5 C -0.06 -3.13 4.84 84.86 0.41 -2.72 16 6 N -0.94 -55.56 11.09 21.65 0.24 -55.32 16 7 Si 0.96 44.11 29.62 68.60 2.03 46.14 16 8 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 9 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 11 C 0.17 6.30 2.55 45.02 0.11 6.41 16 12 C -0.13 -4.77 5.34 30.67 0.16 -4.61 16 13 C 0.12 3.54 6.44 86.36 0.56 4.10 16 14 N -0.60 -15.92 2.97 -822.68 -2.44 -18.36 16 15 C 0.60 17.42 7.65 86.48 0.66 18.08 16 16 O -0.56 -20.62 16.28 -4.29 -0.07 -20.69 16 17 C -0.09 -1.98 6.76 24.00 0.16 -1.82 16 18 C -0.08 -1.90 10.42 22.63 0.24 -1.67 16 19 C -0.27 -4.28 6.16 -20.08 -0.12 -4.40 16 20 C 0.59 10.08 8.09 86.68 0.70 10.78 16 21 N -0.82 -4.12 8.86 -175.85 -1.56 -5.68 16 22 O -0.59 -16.92 17.77 -4.03 -0.07 -16.99 16 23 C 0.09 0.63 11.64 67.72 0.79 1.42 16 24 O -0.14 -1.96 7.13 -0.75 -0.01 -1.97 16 25 C 0.11 2.29 6.14 86.50 0.53 2.82 16 26 C -0.13 -3.84 5.33 30.81 0.16 -3.68 16 27 H -0.01 -0.51 7.67 -2.39 -0.02 -0.53 16 28 H 0.02 1.01 7.01 -2.38 -0.02 0.99 16 29 H 0.03 1.21 6.46 -2.38 -0.02 1.19 16 30 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.07 2.46 7.83 -2.39 -0.02 2.44 16 32 H 0.04 1.59 7.72 -2.39 -0.02 1.57 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.08 2.49 7.00 -2.39 -0.02 2.47 16 35 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.42 -1.63 7.78 -92.71 -0.72 -2.35 16 38 H 0.42 1.46 8.93 -92.71 -0.83 0.63 16 39 H 0.28 -2.05 7.46 -2.91 -0.02 -2.07 16 40 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.12 2.05 4.18 -27.25 -0.11 1.94 16 42 H 0.05 1.56 6.72 -2.39 -0.02 1.54 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -82.74 352.44 1.78 -80.97 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -0.58 Total: 1.13 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 6.21 Total: 21.76 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -5.74 Total: -110.35 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.15 Total: -39.65 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -82.74 1.78 -80.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985642545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.253 kcal (2) G-P(sol) polarization free energy of solvation -82.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds