Wall clock time and date at job start Tue Mar 31 2020 13:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35507 * 116.99496 * 2 1 4 4 C 1.39207 * 120.90523 * 2.89543 * 3 2 1 5 5 C 1.37907 * 119.39363 * 180.30061 * 4 3 2 6 6 N 1.32083 * 121.28601 * 359.69275 * 5 4 3 7 7 C 1.32191 * 121.97851 * 0.02622 * 6 5 4 8 8 O 1.35430 * 119.77221 * 179.97438 * 7 6 5 9 9 C 1.40293 * 120.44567 * 359.97438 * 7 6 5 10 10 C 1.47231 * 120.64905 * 180.02562 * 9 7 6 11 11 O 1.21622 * 119.99531 * 97.04610 * 10 9 7 12 12 N 1.34769 * 120.00141 * 277.03715 * 10 9 7 13 13 C 1.48208 * 119.97251 * 184.74130 * 12 10 9 14 14 C 1.47144 * 110.34629 * 102.46826 * 13 12 10 15 15 C 1.53237 * 111.81356 * 58.22206 * 14 13 12 16 16 N 1.43464 * 108.26752 * 281.68523 * 15 14 13 17 17 C 1.36936 * 118.93790 * 273.78026 * 16 15 14 18 18 H 1.07999 * 120.00340 * 36.56904 * 17 16 15 19 19 C 1.38811 * 119.99959 * 216.57170 * 17 16 15 20 20 N 1.31617 * 119.99952 * 16.24830 * 19 17 16 21 21 Si 1.86794 * 120.00239 * 196.24449 * 19 17 16 22 22 H 1.48498 * 109.47458 * 264.60666 * 21 19 17 23 23 H 1.48500 * 109.47290 * 144.60398 * 21 19 17 24 24 H 1.48508 * 109.47107 * 24.60525 * 21 19 17 25 25 C 1.48851 * 122.11873 * 93.50072 * 16 15 14 26 26 C 1.43621 * 119.97372 * 4.72130 * 12 10 9 27 27 H 1.09001 * 109.46823 * 303.71677 * 1 2 3 28 28 H 1.09000 * 109.46800 * 63.71509 * 1 2 3 29 29 H 1.08995 * 109.46779 * 183.71410 * 1 2 3 30 30 H 1.08005 * 120.30411 * 359.97438 * 4 3 2 31 31 H 1.07990 * 119.35833 * 179.72367 * 5 4 3 32 32 H 0.96701 * 113.99855 * 269.97300 * 8 7 6 33 33 H 1.09006 * 109.32801 * 222.73286 * 13 12 10 34 34 H 1.09002 * 109.32600 * 342.37312 * 13 12 10 35 35 H 1.09000 * 109.01167 * 178.90778 * 14 13 12 36 36 H 1.09005 * 108.99923 * 297.76859 * 14 13 12 37 37 H 1.09001 * 109.49339 * 162.04284 * 15 14 13 38 38 H 1.09004 * 109.73616 * 41.46560 * 15 14 13 39 39 H 0.97003 * 120.00146 * 5.92759 * 20 19 17 40 40 H 1.09004 * 109.47969 * 80.88330 * 25 16 15 41 41 H 1.08999 * 109.47942 * 200.91151 * 25 16 15 42 42 H 1.09000 * 108.88062 * 149.90482 * 26 12 10 43 43 H 1.09006 * 108.87305 * 31.47343 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3058 2.3860 0.0603 5 6 1.9636 3.5980 0.0522 6 7 3.2816 3.6628 -0.0057 7 6 4.0342 2.5773 -0.0590 8 8 5.3820 2.6957 -0.1178 9 6 3.4460 1.3036 -0.0551 10 6 4.2800 0.0917 -0.1138 11 8 4.5648 -0.5006 0.9096 12 7 4.7275 -0.3615 -1.3015 13 6 5.4776 -1.6378 -1.3721 14 6 4.6086 -2.7151 -1.8713 15 6 4.0356 -2.3896 -3.2547 16 7 2.9483 -1.4690 -3.0859 17 6 1.6965 -1.9618 -2.8304 18 1 1.5769 -2.8348 -2.2060 19 6 0.5813 -1.3393 -3.3741 20 7 0.7212 -0.4931 -4.3724 21 14 -1.1180 -1.7025 -2.6888 22 1 -1.7636 -2.7637 -3.5027 23 1 -1.9450 -0.4700 -2.7367 24 1 -0.9966 -2.1627 -1.2821 25 6 3.1383 0.0047 -3.1735 26 6 4.4768 0.3925 -2.4979 27 1 -0.3633 0.5705 0.8548 28 1 -0.3633 0.4551 -0.9214 29 1 -0.3633 -1.0255 0.0666 30 1 0.2273 2.3516 0.1077 31 1 1.3901 4.5120 0.0945 32 1 5.7336 2.7454 -1.0173 33 1 6.3280 -1.5199 -2.0438 34 1 5.8377 -1.9001 -0.3772 35 1 5.1861 -3.6375 -1.9328 36 1 3.7843 -2.8586 -1.1726 37 1 3.6742 -3.3049 -3.7234 38 1 4.8086 -1.9371 -3.8760 39 1 1.5903 -0.3691 -4.7849 40 1 3.1586 0.3070 -4.2206 41 1 2.3156 0.5081 -2.6657 42 1 5.2906 0.2181 -3.2018 43 1 4.4512 1.4531 -2.2474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989496738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:22 Heat of formation + Delta-G solvation = -29.598022 kcal Electronic energy + Delta-G solvation = -30153.868477 eV Core-core repulsion = 26201.668895 eV Total energy + Delta-G solvation = -3952.199582 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.01397 -39.28087 -38.56440 -37.05383 -36.67395 -34.42395 -33.06646 -31.48515 -30.78848 -30.35640 -27.70158 -27.29148 -25.57328 -24.27529 -23.77665 -22.71136 -21.94545 -19.81935 -19.27994 -18.93349 -17.63805 -17.33340 -17.10030 -16.80149 -16.09000 -15.59647 -15.21088 -15.08975 -14.63448 -14.38004 -14.25505 -13.95490 -13.78476 -13.32834 -13.14114 -12.95866 -12.67831 -12.47853 -12.36584 -12.06073 -11.79898 -11.46566 -11.34469 -11.31078 -11.19078 -10.59883 -10.37637 -10.34669 -10.30630 -10.03530 -9.95137 -9.31194 -9.28401 -8.91931 -8.67033 -8.45927 -8.16186 -6.84418 -6.01518 -3.39482 0.88172 1.35273 2.91880 3.10430 3.25491 3.36218 3.38602 3.46866 3.64968 3.83110 4.45927 4.59905 4.84064 4.96551 5.03589 5.08531 5.26834 5.28735 5.42000 5.48730 5.49030 5.52824 5.66312 5.67279 5.81929 5.86695 5.89129 5.94699 6.03904 6.14788 6.29024 6.35121 6.44159 6.63612 6.76490 6.87220 6.92782 7.15733 7.35964 7.41339 7.81581 7.91842 8.09459 8.54754 8.57390 9.14399 9.79515 10.23387 11.18114 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.008022 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.244302 B = 3489.723458 C = 4772.784682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.232 3.768 4 C -0.275 4.275 5 C 0.168 3.832 6 N -0.529 5.529 7 C 0.369 3.631 8 O -0.472 6.472 9 C -0.221 4.221 10 C 0.593 3.407 11 O -0.540 6.540 12 N -0.577 5.577 13 C 0.130 3.870 14 C -0.169 4.169 15 C 0.165 3.835 16 N -0.590 5.590 17 C -0.330 4.330 18 H 0.046 0.954 19 C -0.018 4.018 20 N -0.925 5.925 21 Si 1.052 2.948 22 H -0.295 1.295 23 H -0.286 1.286 24 H -0.287 1.287 25 C 0.142 3.858 26 C 0.092 3.908 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.148 0.852 31 H 0.165 0.835 32 H 0.400 0.600 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.030 0.970 39 H 0.270 0.730 40 H 0.034 0.966 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.563 5.233 4.380 7.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.178 6.178 3 C 0.176 3.824 4 C -0.296 4.296 5 C 0.013 3.987 6 N -0.252 5.252 7 C 0.189 3.811 8 O -0.280 6.280 9 C -0.229 4.229 10 C 0.380 3.620 11 O -0.418 6.418 12 N -0.308 5.308 13 C 0.009 3.991 14 C -0.210 4.210 15 C 0.037 3.963 16 N -0.312 5.312 17 C -0.460 4.460 18 H 0.064 0.936 19 C -0.220 4.220 20 N -0.566 5.566 21 Si 0.883 3.117 22 H -0.223 1.223 23 H -0.212 1.212 24 H -0.214 1.214 25 C 0.015 3.985 26 C -0.034 4.034 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.130 0.870 30 H 0.165 0.835 31 H 0.182 0.818 32 H 0.259 0.741 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.607 5.826 5.385 8.351 hybrid contribution 0.842 -1.104 -0.508 1.478 sum 3.449 4.722 4.877 7.615 Atomic orbital electron populations 1.23529 0.77401 1.05315 1.01312 1.86255 1.22041 1.24414 1.85112 1.19103 0.90213 0.85834 0.87293 1.22196 1.02142 0.92707 1.12572 1.22299 0.88554 0.97158 0.90738 1.67222 1.07217 1.32007 1.18740 1.18683 0.84220 0.85728 0.92426 1.84729 1.14825 1.95181 1.33248 1.20148 0.92070 0.95370 1.15326 1.17415 0.78179 0.83010 0.83426 1.90731 1.57831 1.59124 1.34073 1.47261 1.54500 1.22992 1.06051 1.20594 0.93389 0.83248 1.01870 1.21760 1.00090 0.96841 1.02326 1.20206 0.90071 0.93748 0.92298 1.43549 1.05276 0.99020 1.83395 1.19813 0.84053 1.14997 1.27157 0.93581 1.25747 1.02003 0.98513 0.95763 1.70740 1.27424 1.37754 1.20683 0.83891 0.76243 0.76197 0.75344 1.22336 1.21179 1.21356 1.22082 0.93539 0.86079 0.96772 1.21909 1.00552 0.93984 0.86969 0.92690 0.91555 0.87007 0.83455 0.81755 0.74124 0.91902 0.90211 0.92457 0.91209 0.93370 0.95182 0.91833 0.94788 0.91971 0.91373 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.48 101.05 0.86 1.16 16 2 O -0.27 -5.43 10.03 -18.21 -0.18 -5.61 16 3 C 0.23 4.27 6.17 -38.32 -0.24 4.03 16 4 C -0.28 -4.06 9.11 -39.34 -0.36 -4.42 16 5 C 0.17 2.28 11.15 -17.56 -0.20 2.08 16 6 N -0.53 -8.35 10.37 -13.06 -0.14 -8.48 16 7 C 0.37 6.20 6.75 -16.63 -0.11 6.09 16 8 O -0.47 -7.07 12.99 -17.98 -0.23 -7.30 16 9 C -0.22 -4.17 4.28 -104.57 -0.45 -4.62 16 10 C 0.59 12.16 6.27 -12.61 -0.08 12.09 16 11 O -0.54 -12.72 16.53 5.26 0.09 -12.63 16 12 N -0.58 -10.57 2.46 -178.00 -0.44 -11.01 16 13 C 0.13 2.20 5.72 -5.91 -0.03 2.16 16 14 C -0.17 -3.07 5.63 -29.42 -0.17 -3.23 16 15 C 0.16 3.27 5.59 -5.53 -0.03 3.24 16 16 N -0.59 -13.57 2.30 -172.35 -0.40 -13.97 16 17 C -0.33 -8.55 9.08 -15.06 -0.14 -8.68 16 18 H 0.05 1.26 7.88 -52.49 -0.41 0.85 16 19 C -0.02 -0.48 4.89 -17.43 -0.09 -0.56 16 20 N -0.92 -25.75 12.87 55.49 0.71 -25.04 16 21 Si 1.05 23.36 26.84 -169.99 -4.56 18.79 16 22 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.29 -5.76 5.56 56.52 0.31 -5.44 16 25 C 0.14 3.01 5.06 -1.76 -0.01 3.00 16 26 C 0.09 1.56 5.01 -4.58 -0.02 1.54 16 27 H 0.05 0.68 7.35 -51.93 -0.38 0.30 16 28 H 0.07 1.12 6.66 -51.93 -0.35 0.78 16 29 H 0.11 1.84 6.13 -51.93 -0.32 1.52 16 30 H 0.15 1.77 6.44 -52.48 -0.34 1.44 16 31 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.40 4.08 8.41 45.56 0.38 4.47 16 33 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 34 H 0.08 1.40 7.08 -51.93 -0.37 1.03 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.53 7.91 -51.93 -0.41 1.12 16 37 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 38 H 0.03 0.54 7.58 -51.93 -0.39 0.15 16 39 H 0.27 7.55 5.90 -40.82 -0.24 7.31 16 40 H 0.03 0.76 6.87 -51.93 -0.36 0.40 16 41 H 0.06 1.49 6.81 -51.93 -0.35 1.13 16 42 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 43 H 0.05 0.81 5.45 -51.93 -0.28 0.53 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -33.59 337.84 -5.90 -39.49 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.79 Total: 6.79 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -1.06 Total: 13.88 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.26 Total: -58.49 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.33 Total: -25.54 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.56 Total: 18.79 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.59 -5.90 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989496738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.891 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds