Wall clock time and date at job start Tue Mar 31 2020 13:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35507 * 116.99496 * 2 1 4 4 C 1.39207 * 120.90523 * 2.89543 * 3 2 1 5 5 C 1.37907 * 119.39363 * 180.30061 * 4 3 2 6 6 N 1.32083 * 121.28601 * 359.69275 * 5 4 3 7 7 C 1.32191 * 121.97851 * 0.02622 * 6 5 4 8 8 O 1.35430 * 119.77221 * 179.97438 * 7 6 5 9 9 C 1.40293 * 120.44567 * 359.97438 * 7 6 5 10 10 C 1.47231 * 120.64905 * 180.02562 * 9 7 6 11 11 O 1.21622 * 119.99531 * 97.04610 * 10 9 7 12 12 N 1.34769 * 120.00141 * 277.03715 * 10 9 7 13 13 C 1.48208 * 119.97251 * 184.74130 * 12 10 9 14 14 C 1.47144 * 110.34629 * 102.46826 * 13 12 10 15 15 C 1.53237 * 111.81356 * 58.22206 * 14 13 12 16 16 N 1.43464 * 108.26752 * 281.68523 * 15 14 13 17 17 C 1.36936 * 118.93790 * 273.78026 * 16 15 14 18 18 H 1.07999 * 120.00340 * 36.56904 * 17 16 15 19 19 C 1.38811 * 119.99959 * 216.57170 * 17 16 15 20 20 N 1.31617 * 119.99952 * 16.24830 * 19 17 16 21 21 Si 1.86794 * 120.00239 * 196.24449 * 19 17 16 22 22 H 1.48498 * 109.47458 * 264.60666 * 21 19 17 23 23 H 1.48500 * 109.47290 * 144.60398 * 21 19 17 24 24 H 1.48508 * 109.47107 * 24.60525 * 21 19 17 25 25 C 1.48851 * 122.11873 * 93.50072 * 16 15 14 26 26 C 1.43621 * 119.97372 * 4.72130 * 12 10 9 27 27 H 1.09001 * 109.46823 * 303.71677 * 1 2 3 28 28 H 1.09000 * 109.46800 * 63.71509 * 1 2 3 29 29 H 1.08995 * 109.46779 * 183.71410 * 1 2 3 30 30 H 1.08005 * 120.30411 * 359.97438 * 4 3 2 31 31 H 1.07990 * 119.35833 * 179.72367 * 5 4 3 32 32 H 0.96701 * 113.99855 * 269.97300 * 8 7 6 33 33 H 1.09006 * 109.32801 * 222.73286 * 13 12 10 34 34 H 1.09002 * 109.32600 * 342.37312 * 13 12 10 35 35 H 1.09000 * 109.01167 * 178.90778 * 14 13 12 36 36 H 1.09005 * 108.99923 * 297.76859 * 14 13 12 37 37 H 1.09001 * 109.49339 * 162.04284 * 15 14 13 38 38 H 1.09004 * 109.73616 * 41.46560 * 15 14 13 39 39 H 0.97003 * 120.00146 * 5.92759 * 20 19 17 40 40 H 1.09004 * 109.47969 * 80.88330 * 25 16 15 41 41 H 1.08999 * 109.47942 * 200.91151 * 25 16 15 42 42 H 1.09000 * 108.88062 * 149.90482 * 26 12 10 43 43 H 1.09006 * 108.87305 * 31.47343 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3058 2.3860 0.0603 5 6 1.9636 3.5980 0.0522 6 7 3.2816 3.6628 -0.0057 7 6 4.0342 2.5773 -0.0590 8 8 5.3820 2.6957 -0.1178 9 6 3.4460 1.3036 -0.0551 10 6 4.2800 0.0917 -0.1138 11 8 4.5648 -0.5006 0.9096 12 7 4.7275 -0.3615 -1.3015 13 6 5.4776 -1.6378 -1.3721 14 6 4.6086 -2.7151 -1.8713 15 6 4.0356 -2.3896 -3.2547 16 7 2.9483 -1.4690 -3.0859 17 6 1.6965 -1.9618 -2.8304 18 1 1.5769 -2.8348 -2.2060 19 6 0.5813 -1.3393 -3.3741 20 7 0.7212 -0.4931 -4.3724 21 14 -1.1180 -1.7025 -2.6888 22 1 -1.7636 -2.7637 -3.5027 23 1 -1.9450 -0.4700 -2.7367 24 1 -0.9966 -2.1627 -1.2821 25 6 3.1383 0.0047 -3.1735 26 6 4.4768 0.3925 -2.4979 27 1 -0.3633 0.5705 0.8548 28 1 -0.3633 0.4551 -0.9214 29 1 -0.3633 -1.0255 0.0666 30 1 0.2273 2.3516 0.1077 31 1 1.3901 4.5120 0.0945 32 1 5.7336 2.7454 -1.0173 33 1 6.3280 -1.5199 -2.0438 34 1 5.8377 -1.9001 -0.3772 35 1 5.1861 -3.6375 -1.9328 36 1 3.7843 -2.8586 -1.1726 37 1 3.6742 -3.3049 -3.7234 38 1 4.8086 -1.9371 -3.8760 39 1 1.5903 -0.3691 -4.7849 40 1 3.1586 0.3070 -4.2206 41 1 2.3156 0.5081 -2.6657 42 1 5.2906 0.2181 -3.2018 43 1 4.4512 1.4531 -2.2474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989496738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:21 Heat of formation + Delta-G solvation = -57.040131 kcal Electronic energy + Delta-G solvation = -30155.058456 eV Core-core repulsion = 26201.668895 eV Total energy + Delta-G solvation = -3953.389561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31844 -40.72520 -39.84809 -38.71597 -37.85756 -36.14313 -34.60997 -32.91684 -32.48628 -31.56532 -29.32102 -28.59176 -27.15989 -25.64841 -25.56235 -23.95434 -23.39492 -21.53207 -20.63452 -20.22029 -19.34191 -18.69842 -18.43268 -18.27912 -17.53976 -16.96266 -16.65029 -16.40170 -16.10464 -15.95705 -15.73795 -15.46816 -15.20239 -14.96173 -14.62789 -14.26547 -14.15196 -14.01361 -13.79503 -13.61756 -13.04796 -12.96445 -12.84806 -12.75823 -12.63672 -12.22697 -12.03539 -11.99465 -11.84405 -11.67069 -11.37621 -11.16574 -10.60715 -10.43303 -10.11752 -9.98956 -9.68279 -8.78015 -8.02675 -5.42707 -0.30520 0.10497 1.39802 1.46038 1.56382 1.70218 1.90628 2.01436 2.45469 2.62215 2.64848 3.26041 3.36743 3.59277 3.67923 3.77104 3.88682 3.95725 4.07581 4.12768 4.15328 4.22552 4.30910 4.35277 4.44392 4.49641 4.51951 4.60840 4.66022 4.80970 4.86805 4.95172 4.99518 5.14548 5.18026 5.23439 5.39594 5.64414 5.98562 6.09591 6.31458 6.41316 6.54261 6.74932 7.04521 7.24743 7.86620 8.28623 9.11349 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.008022 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.244302 B = 3489.723458 C = 4772.784682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.308 6.308 3 C 0.208 3.792 4 C -0.272 4.272 5 C 0.178 3.822 6 N -0.536 5.536 7 C 0.373 3.627 8 O -0.479 6.479 9 C -0.251 4.251 10 C 0.589 3.411 11 O -0.584 6.584 12 N -0.574 5.574 13 C 0.126 3.874 14 C -0.153 4.153 15 C 0.161 3.839 16 N -0.604 5.604 17 C -0.328 4.328 18 H 0.022 0.978 19 C -0.054 4.054 20 N -0.947 5.947 21 Si 1.080 2.920 22 H -0.300 1.300 23 H -0.275 1.275 24 H -0.262 1.262 25 C 0.151 3.849 26 C 0.100 3.900 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.175 0.825 31 H 0.212 0.788 32 H 0.420 0.580 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.022 0.978 37 H 0.033 0.967 38 H 0.058 0.942 39 H 0.258 0.742 40 H 0.023 0.977 41 H 0.030 0.970 42 H 0.102 0.898 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.028 6.866 4.434 9.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.217 6.217 3 C 0.152 3.848 4 C -0.293 4.293 5 C 0.024 3.976 6 N -0.259 5.259 7 C 0.193 3.807 8 O -0.289 6.289 9 C -0.259 4.259 10 C 0.377 3.623 11 O -0.464 6.464 12 N -0.303 5.303 13 C 0.005 3.995 14 C -0.194 4.194 15 C 0.034 3.966 16 N -0.327 5.327 17 C -0.459 4.459 18 H 0.039 0.961 19 C -0.252 4.252 20 N -0.590 5.590 21 Si 0.906 3.094 22 H -0.228 1.228 23 H -0.201 1.201 24 H -0.188 1.188 25 C 0.025 3.975 26 C -0.026 4.026 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.192 0.808 31 H 0.229 0.771 32 H 0.282 0.718 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.041 0.959 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.040 0.960 41 H 0.049 0.951 42 H 0.120 0.880 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.111 7.461 5.415 9.729 hybrid contribution 0.734 -1.625 -0.544 1.864 sum 3.845 5.836 4.870 8.518 Atomic orbital electron populations 1.23628 0.76169 1.05501 1.02584 1.86185 1.23677 1.26097 1.85728 1.19459 0.90496 0.86422 0.88378 1.22534 1.03415 0.91792 1.11555 1.23092 0.88051 0.98415 0.88086 1.67379 1.08211 1.31219 1.19059 1.18725 0.84817 0.85313 0.91849 1.84680 1.14078 1.95070 1.35090 1.20232 0.92398 0.95413 1.17866 1.17802 0.77771 0.83369 0.83358 1.90688 1.59536 1.60677 1.35546 1.47381 1.53799 1.23303 1.05862 1.20757 0.94069 0.82240 1.02416 1.21566 0.98997 0.98968 0.99837 1.20329 0.89930 0.92825 0.93521 1.43730 1.05147 1.00263 1.83545 1.19791 0.85802 1.14310 1.26001 0.96051 1.26738 1.04765 0.98152 0.95523 1.70855 1.26811 1.39289 1.22051 0.83556 0.73211 0.76380 0.76236 1.22817 1.20061 1.18754 1.21894 0.94888 0.84615 0.96055 1.21849 0.99033 0.94893 0.86781 0.88694 0.92445 0.87836 0.80801 0.77127 0.71841 0.87654 0.91023 0.89411 0.95919 0.94869 0.92365 0.93044 0.95951 0.95088 0.88006 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.48 8.48 113.37 0.96 1.44 16 2 O -0.31 -12.54 10.03 -88.09 -0.88 -13.43 16 3 C 0.21 7.59 6.17 23.09 0.14 7.73 16 4 C -0.27 -7.46 9.11 22.42 0.20 -7.25 16 5 C 0.18 4.26 11.15 84.58 0.94 5.21 16 6 N -0.54 -15.56 10.37 -308.26 -3.20 -18.76 16 7 C 0.37 11.98 6.75 85.14 0.57 12.55 16 8 O -0.48 -13.49 12.99 -87.26 -1.13 -14.62 16 9 C -0.25 -9.38 4.28 -19.83 -0.08 -9.46 16 10 C 0.59 24.26 6.27 86.61 0.54 24.81 16 11 O -0.58 -28.16 16.53 -4.10 -0.07 -28.23 16 12 N -0.57 -20.48 2.46 -835.33 -2.05 -22.53 16 13 C 0.13 4.04 5.72 84.23 0.48 4.53 16 14 C -0.15 -5.45 5.63 28.85 0.16 -5.29 16 15 C 0.16 6.29 5.59 87.02 0.49 6.77 16 16 N -0.60 -28.07 2.30 -699.20 -1.61 -29.68 16 17 C -0.33 -17.49 9.08 84.03 0.76 -16.72 16 18 H 0.02 1.24 7.88 -2.91 -0.02 1.21 16 19 C -0.05 -2.90 4.89 84.86 0.42 -2.48 16 20 N -0.95 -53.59 12.87 21.65 0.28 -53.31 16 21 Si 1.08 47.38 26.84 68.60 1.84 49.22 16 22 H -0.30 -13.32 7.11 99.48 0.71 -12.62 16 23 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.26 -10.30 5.56 99.48 0.55 -9.75 16 25 C 0.15 6.43 5.06 86.56 0.44 6.86 16 26 C 0.10 3.21 5.01 87.55 0.44 3.65 16 27 H 0.09 2.19 7.35 -2.39 -0.02 2.17 16 28 H 0.06 1.91 6.66 -2.39 -0.02 1.90 16 29 H 0.10 3.40 6.13 -2.39 -0.01 3.39 16 30 H 0.17 3.67 6.44 -2.91 -0.02 3.65 16 31 H 0.21 2.95 8.06 -2.92 -0.02 2.93 16 32 H 0.42 7.57 8.41 -74.06 -0.62 6.95 16 33 H 0.11 2.54 8.06 -2.38 -0.02 2.52 16 34 H 0.07 2.46 7.08 -2.39 -0.02 2.45 16 35 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.02 1.01 7.91 -2.38 -0.02 0.99 16 37 H 0.03 1.38 8.02 -2.39 -0.02 1.36 16 38 H 0.06 1.95 7.58 -2.39 -0.02 1.93 16 39 H 0.26 14.78 5.90 -92.71 -0.55 14.23 16 40 H 0.02 1.01 6.87 -2.38 -0.02 0.99 16 41 H 0.03 1.50 6.81 -2.39 -0.02 1.48 16 42 H 0.10 2.63 7.73 -2.39 -0.02 2.61 16 43 H 0.07 2.09 5.45 -2.38 -0.01 2.08 16 Total: -1.00 -76.97 337.84 0.15 -76.81 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.51 Total: 22.19 kcal Atomic # 6 Polarization: 25.87 SS G_CDS: 6.47 Total: 32.34 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -6.58 Total: -124.28 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -2.09 Total: -56.28 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.84 Total: 49.22 kcal Total: -76.97 0.15 -76.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989496738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.773 kcal (2) G-P(sol) polarization free energy of solvation -76.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds