Wall clock time and date at job start Tue Mar 31 2020 13:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35732 * 116.99813 * 2 1 4 4 C 1.41849 * 126.78539 * 179.97438 * 3 2 1 5 5 C 1.36667 * 103.81189 * 179.70553 * 4 3 2 6 6 C 1.47545 * 126.88059 * 180.22642 * 5 4 3 7 7 O 1.21578 * 119.99937 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99836 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99874 * 180.02562 * 8 6 5 10 10 C 1.53590 * 112.23865 * 297.64224 * 9 8 6 11 11 C 1.55462 * 106.05619 * 238.16067 * 10 9 8 12 12 C 1.54758 * 104.36725 * 335.36451 * 11 10 9 13 13 C 1.54774 * 103.21210 * 37.67865 * 12 11 10 14 14 H 1.08994 * 112.61780 * 85.33828 * 13 12 11 15 15 N 1.46981 * 108.68494 * 209.80293 * 13 12 11 16 16 C 1.36939 * 125.58059 * 294.13301 * 15 13 12 17 17 H 1.08003 * 119.99459 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00280 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99982 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00171 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46959 * 59.99850 * 20 18 16 22 22 H 1.48494 * 109.47208 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.46910 * 300.00259 * 20 18 16 24 24 C 1.47366 * 108.84191 * 114.13624 * 15 13 12 25 25 C 1.54867 * 104.82212 * 335.30303 * 24 15 13 26 26 O 1.34661 * 106.24103 * 0.26168 * 5 4 3 27 27 N 1.20874 * 111.63162 * 0.02562 * 26 5 4 28 28 H 1.08997 * 109.46599 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47174 * 299.99851 * 1 2 3 30 30 H 1.08997 * 109.46933 * 60.00405 * 1 2 3 31 31 H 1.08002 * 128.09751 * 359.97323 * 4 3 2 32 32 H 0.96995 * 120.00067 * 0.02562 * 8 6 5 33 33 H 1.08998 * 110.02188 * 358.14316 * 10 9 8 34 34 H 1.09006 * 110.01320 * 119.53258 * 10 9 8 35 35 H 1.09003 * 110.50806 * 216.56575 * 11 10 9 36 36 H 1.09006 * 110.39525 * 94.10318 * 11 10 9 37 37 H 1.08999 * 110.66923 * 279.24506 * 12 11 10 38 38 H 1.09001 * 110.66901 * 156.10798 * 12 11 10 39 39 H 0.97000 * 119.99970 * 179.97438 * 19 18 16 40 40 H 1.09003 * 110.37133 * 216.46285 * 24 15 13 41 41 H 1.09004 * 110.37317 * 94.13846 * 24 15 13 42 42 H 1.09004 * 110.96413 * 278.95241 * 25 24 15 43 43 H 1.08997 * 110.96860 * 155.19369 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 0.0005 5 6 3.5390 2.8138 -0.0066 6 6 4.7784 3.6142 -0.0139 7 8 5.8603 3.0596 -0.0135 8 7 4.7113 4.9604 -0.0199 9 6 5.9418 5.7551 -0.0277 10 6 6.7922 5.5222 1.2299 11 6 6.9591 6.9150 1.9001 12 6 6.7769 7.9235 0.7404 13 6 5.6618 7.2784 -0.1174 14 1 4.6621 7.5298 0.2367 15 7 5.8595 7.6717 -1.5197 16 6 5.7479 8.9439 -2.0138 17 1 5.4943 9.7595 -1.3527 18 6 5.9608 9.1854 -3.3640 19 7 6.2694 8.1913 -4.1697 20 14 5.8093 10.9210 -4.0377 21 1 6.7900 11.8038 -3.3564 22 1 6.0820 10.9110 -5.4974 23 1 4.4347 11.4280 -3.7949 24 6 6.1974 6.4727 -2.3072 25 6 6.8089 5.4853 -1.2828 26 8 2.2758 3.2803 -0.0047 27 7 1.4686 2.3806 0.0029 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.2442 0.7262 0.0014 32 1 3.8481 5.4029 -0.0190 33 1 6.2857 4.8270 1.8994 34 1 7.7696 5.1278 0.9517 35 1 7.9529 7.0117 2.3374 36 1 6.1925 7.0651 2.6604 37 1 7.6979 8.0191 0.1655 38 1 6.4570 8.8936 1.1209 39 1 6.4178 8.3600 -5.1133 40 1 6.9268 6.7188 -3.0790 41 1 5.2992 6.0471 -2.7548 42 1 7.8560 5.7204 -1.0916 43 1 6.6973 4.4548 -1.6198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990325679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:17 Heat of formation + Delta-G solvation = 31.103904 kcal Electronic energy + Delta-G solvation = -27813.317340 eV Core-core repulsion = 23863.749992 eV Total energy + Delta-G solvation = -3949.567349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.12855 -40.30007 -39.12732 -38.22308 -34.34747 -33.70661 -33.32282 -32.02381 -31.34306 -29.76810 -27.94954 -26.74470 -26.31242 -24.03255 -23.81111 -23.44934 -21.35690 -20.30172 -20.01606 -18.95222 -18.59572 -18.10342 -17.07228 -17.05533 -16.30640 -15.81472 -15.70522 -15.27456 -14.99755 -14.70187 -14.44346 -14.02099 -13.79200 -13.54215 -13.21130 -12.84791 -12.54328 -12.22151 -12.18531 -11.91332 -11.82966 -11.58621 -11.21570 -11.01094 -10.84924 -10.72423 -10.58055 -10.37585 -10.16716 -10.02751 -9.99271 -9.91581 -9.72332 -9.56960 -9.54331 -8.73958 -8.65611 -6.87630 -5.65682 -3.09195 0.65359 1.90991 2.40413 2.51354 3.01151 3.35210 3.39680 3.44291 3.45431 3.89729 4.46198 4.56371 4.71255 4.77248 4.82543 4.94161 5.01588 5.08818 5.15530 5.27571 5.49044 5.50197 5.60796 5.73923 5.80451 5.93537 6.01532 6.07693 6.13934 6.31353 6.37036 6.48006 6.54902 6.64112 6.70892 6.73911 6.88406 7.04363 7.46229 7.52264 7.62871 7.85567 7.88258 8.11121 8.35231 9.20003 9.80959 10.44347 11.36835 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.003428 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.845615 B = 8166.538322 C = 9144.958386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.282 6.282 3 C 0.203 3.797 4 C -0.159 4.159 5 C -0.048 4.048 6 C 0.602 3.398 7 O -0.505 6.505 8 N -0.684 5.684 9 C 0.157 3.843 10 C -0.112 4.112 11 C -0.124 4.124 12 C -0.128 4.128 13 C 0.163 3.837 14 H 0.049 0.951 15 N -0.596 5.596 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.920 5.920 20 Si 0.913 3.087 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.151 3.849 25 C -0.143 4.143 26 O 0.118 5.882 27 N -0.391 5.391 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.190 0.810 32 H 0.407 0.593 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.252 0.748 40 H 0.109 0.891 41 H 0.010 0.990 42 H 0.071 0.929 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -12.407 10.975 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.188 6.188 3 C 0.005 3.995 4 C -0.182 4.182 5 C -0.115 4.115 6 C 0.384 3.616 7 O -0.381 6.381 8 N -0.334 5.334 9 C 0.071 3.929 10 C -0.151 4.151 11 C -0.162 4.162 12 C -0.168 4.168 13 C 0.055 3.945 14 H 0.067 0.933 15 N -0.320 5.320 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C 0.026 3.974 25 C -0.182 4.182 26 O 0.052 5.948 27 N -0.115 5.115 28 H 0.125 0.875 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.207 0.793 32 H 0.243 0.757 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.127 0.873 41 H 0.028 0.972 42 H 0.090 0.910 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.808 -12.572 10.726 17.873 hybrid contribution -0.337 0.582 -0.437 0.802 sum -7.145 -11.990 10.289 17.340 Atomic orbital electron populations 1.23098 0.76628 1.04205 1.02514 1.86215 1.22724 1.20430 1.89426 1.21894 0.90672 0.85817 1.01072 1.22151 0.94339 0.94967 1.06751 1.24286 0.87085 0.93932 1.06171 1.16448 0.84916 0.82169 0.78024 1.90869 1.26080 1.71223 1.49899 1.45844 1.10806 1.04652 1.72071 1.21838 0.83520 0.91059 0.96485 1.22521 0.99972 0.97040 0.95601 1.22570 1.00833 0.94880 0.97949 1.22922 1.00663 0.97419 0.95815 1.21795 0.96176 0.88708 0.87869 0.93325 1.44518 1.81596 1.04503 1.01354 1.18979 1.40415 0.83495 0.92081 0.90511 1.24777 1.02052 0.97605 0.96051 1.69783 1.54085 1.28968 1.04006 0.86174 0.77820 0.83694 0.77911 1.21169 1.21657 1.21270 1.22000 0.98498 0.83736 0.93144 1.23375 0.98510 1.00761 0.95600 1.84968 1.11905 1.29594 1.68343 1.73997 1.15978 0.96670 1.24841 0.87536 0.92144 0.92070 0.79288 0.75735 0.92053 0.90859 0.92131 0.92257 0.90580 0.92167 0.93676 0.87303 0.97216 0.90995 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.73 101.05 1.08 1.32 16 2 O -0.28 -3.12 10.57 -18.90 -0.20 -3.32 16 3 C 0.20 2.55 8.00 -16.72 -0.13 2.41 16 4 C -0.16 -1.96 10.97 -38.77 -0.43 -2.38 16 5 C -0.05 -0.65 7.29 -36.36 -0.26 -0.91 16 6 C 0.60 9.06 7.01 -12.46 -0.09 8.97 16 7 O -0.51 -8.65 14.72 5.30 0.08 -8.57 16 8 N -0.68 -10.36 5.22 -46.38 -0.24 -10.61 16 9 C 0.16 2.65 0.74 -129.38 -0.10 2.55 16 10 C -0.11 -1.69 5.41 -25.12 -0.14 -1.82 16 11 C -0.12 -1.73 6.87 -24.50 -0.17 -1.89 16 12 C -0.13 -2.19 6.22 -24.87 -0.15 -2.34 16 13 C 0.16 3.09 3.67 -65.60 -0.24 2.84 16 14 H 0.05 0.91 7.96 -51.93 -0.41 0.49 16 15 N -0.60 -14.17 3.03 -161.13 -0.49 -14.65 16 16 C -0.22 -5.83 10.01 -15.06 -0.15 -5.98 16 17 H 0.08 1.95 7.83 -52.48 -0.41 1.54 16 18 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 19 N -0.92 -26.18 10.07 55.49 0.56 -25.62 16 20 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.15 3.57 5.91 -2.58 -0.02 3.55 16 25 C -0.14 -2.78 5.71 -24.74 -0.14 -2.92 16 26 O 0.12 1.57 11.03 15.50 0.17 1.74 16 27 N -0.39 -5.23 11.50 30.47 0.35 -4.88 16 28 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.19 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.41 5.60 8.31 -40.82 -0.34 5.26 16 33 H 0.06 0.88 7.58 -51.93 -0.39 0.49 16 34 H 0.07 1.13 7.37 -51.93 -0.38 0.74 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.11 2.93 5.82 -51.93 -0.30 2.63 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 1.39 7.63 -51.93 -0.40 0.99 16 43 H 0.07 1.35 6.53 -51.93 -0.34 1.01 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -30.00 351.50 -6.44 -36.44 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.91 Total: 4.59 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.03 Total: 3.05 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.18 Total: -55.76 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.05 Total: -10.15 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.00 -6.44 -36.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990325679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.542 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds