Wall clock time and date at job start Tue Mar 31 2020 13:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35732 * 116.99813 * 2 1 4 4 C 1.41849 * 126.78539 * 179.97438 * 3 2 1 5 5 C 1.36667 * 103.81189 * 179.70553 * 4 3 2 6 6 C 1.47545 * 126.88059 * 180.22642 * 5 4 3 7 7 O 1.21578 * 119.99937 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99836 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99874 * 180.02562 * 8 6 5 10 10 C 1.53590 * 112.23865 * 297.64224 * 9 8 6 11 11 C 1.55462 * 106.05619 * 238.16067 * 10 9 8 12 12 C 1.54758 * 104.36725 * 335.36451 * 11 10 9 13 13 C 1.54774 * 103.21210 * 37.67865 * 12 11 10 14 14 H 1.08994 * 112.61780 * 85.33828 * 13 12 11 15 15 N 1.46981 * 108.68494 * 209.80293 * 13 12 11 16 16 C 1.36939 * 125.58059 * 294.13301 * 15 13 12 17 17 H 1.08003 * 119.99459 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00280 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99982 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00171 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46959 * 59.99850 * 20 18 16 22 22 H 1.48494 * 109.47208 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.46910 * 300.00259 * 20 18 16 24 24 C 1.47366 * 108.84191 * 114.13624 * 15 13 12 25 25 C 1.54867 * 104.82212 * 335.30303 * 24 15 13 26 26 O 1.34661 * 106.24103 * 0.26168 * 5 4 3 27 27 N 1.20874 * 111.63162 * 0.02562 * 26 5 4 28 28 H 1.08997 * 109.46599 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47174 * 299.99851 * 1 2 3 30 30 H 1.08997 * 109.46933 * 60.00405 * 1 2 3 31 31 H 1.08002 * 128.09751 * 359.97323 * 4 3 2 32 32 H 0.96995 * 120.00067 * 0.02562 * 8 6 5 33 33 H 1.08998 * 110.02188 * 358.14316 * 10 9 8 34 34 H 1.09006 * 110.01320 * 119.53258 * 10 9 8 35 35 H 1.09003 * 110.50806 * 216.56575 * 11 10 9 36 36 H 1.09006 * 110.39525 * 94.10318 * 11 10 9 37 37 H 1.08999 * 110.66923 * 279.24506 * 12 11 10 38 38 H 1.09001 * 110.66901 * 156.10798 * 12 11 10 39 39 H 0.97000 * 119.99970 * 179.97438 * 19 18 16 40 40 H 1.09003 * 110.37133 * 216.46285 * 24 15 13 41 41 H 1.09004 * 110.37317 * 94.13846 * 24 15 13 42 42 H 1.09004 * 110.96413 * 278.95241 * 25 24 15 43 43 H 1.08997 * 110.96860 * 155.19369 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 0.0005 5 6 3.5390 2.8138 -0.0066 6 6 4.7784 3.6142 -0.0139 7 8 5.8603 3.0596 -0.0135 8 7 4.7113 4.9604 -0.0199 9 6 5.9418 5.7551 -0.0277 10 6 6.7922 5.5222 1.2299 11 6 6.9591 6.9150 1.9001 12 6 6.7769 7.9235 0.7404 13 6 5.6618 7.2784 -0.1174 14 1 4.6621 7.5298 0.2367 15 7 5.8595 7.6717 -1.5197 16 6 5.7479 8.9439 -2.0138 17 1 5.4943 9.7595 -1.3527 18 6 5.9608 9.1854 -3.3640 19 7 6.2694 8.1913 -4.1697 20 14 5.8093 10.9210 -4.0377 21 1 6.7900 11.8038 -3.3564 22 1 6.0820 10.9110 -5.4974 23 1 4.4347 11.4280 -3.7949 24 6 6.1974 6.4727 -2.3072 25 6 6.8089 5.4853 -1.2828 26 8 2.2758 3.2803 -0.0047 27 7 1.4686 2.3806 0.0029 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.2442 0.7262 0.0014 32 1 3.8481 5.4029 -0.0190 33 1 6.2857 4.8270 1.8994 34 1 7.7696 5.1278 0.9517 35 1 7.9529 7.0117 2.3374 36 1 6.1925 7.0651 2.6604 37 1 7.6979 8.0191 0.1655 38 1 6.4570 8.8936 1.1209 39 1 6.4178 8.3600 -5.1133 40 1 6.9268 6.7188 -3.0790 41 1 5.2992 6.0471 -2.7548 42 1 7.8560 5.7204 -1.0916 43 1 6.6973 4.4548 -1.6198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990325679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:17 Heat of formation + Delta-G solvation = 9.969076 kcal Electronic energy + Delta-G solvation = -27814.233815 eV Core-core repulsion = 23863.749992 eV Total energy + Delta-G solvation = -3950.483823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.13152 -41.66391 -39.96492 -39.61300 -36.04441 -34.96272 -34.33868 -33.39649 -32.89510 -31.38169 -28.64695 -28.37112 -27.72729 -25.70384 -25.09819 -24.45717 -22.63827 -21.73114 -21.37604 -20.30280 -19.86766 -19.10631 -18.87524 -17.97229 -17.57706 -16.95174 -16.80974 -16.62297 -16.28057 -16.10820 -15.66506 -15.50072 -15.02670 -14.84135 -14.64331 -14.45347 -13.87651 -13.50831 -13.23850 -13.14250 -12.92899 -12.90890 -12.82037 -12.60592 -12.57226 -12.27716 -12.05740 -11.88721 -11.71754 -11.65908 -11.47031 -11.21995 -11.17211 -11.02268 -10.68155 -10.49585 -10.08898 -8.83159 -7.70684 -5.15200 -0.40635 0.93084 1.40229 1.50169 1.52297 1.54493 1.58416 1.84583 2.23372 2.53691 2.94376 3.36916 3.39095 3.61698 3.64477 3.77821 3.97059 3.98414 3.99072 4.23576 4.27507 4.39832 4.42969 4.50893 4.56879 4.61843 4.63070 4.65339 4.83180 4.87785 4.98325 5.13793 5.18866 5.26845 5.36111 5.48910 5.56109 5.61655 5.69395 5.80280 5.86664 6.26569 6.35004 6.82885 6.93311 7.15348 7.84002 8.47231 9.30305 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.003428 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.845615 B = 8166.538322 C = 9144.958386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.288 6.288 3 C 0.202 3.798 4 C -0.150 4.150 5 C -0.057 4.057 6 C 0.609 3.391 7 O -0.526 6.526 8 N -0.684 5.684 9 C 0.167 3.833 10 C -0.106 4.106 11 C -0.109 4.109 12 C -0.124 4.124 13 C 0.153 3.847 14 H 0.059 0.941 15 N -0.612 5.612 16 C -0.223 4.223 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.951 5.951 20 Si 0.975 3.025 21 H -0.277 1.277 22 H -0.300 1.300 23 H -0.279 1.279 24 C 0.159 3.841 25 C -0.130 4.130 26 O 0.113 5.887 27 N -0.400 5.400 28 H 0.139 0.861 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.207 0.793 32 H 0.414 0.586 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.244 0.756 40 H 0.072 0.928 41 H -0.019 1.019 42 H 0.073 0.927 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.131 -12.941 13.257 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.194 6.194 3 C 0.005 3.995 4 C -0.172 4.172 5 C -0.123 4.123 6 C 0.392 3.608 7 O -0.403 6.403 8 N -0.334 5.334 9 C 0.081 3.919 10 C -0.145 4.145 11 C -0.147 4.147 12 C -0.164 4.164 13 C 0.047 3.953 14 H 0.077 0.923 15 N -0.336 5.336 16 C -0.352 4.352 17 H 0.103 0.897 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.804 3.196 21 H -0.203 1.203 22 H -0.227 1.227 23 H -0.206 1.206 24 C 0.034 3.966 25 C -0.170 4.170 26 O 0.048 5.952 27 N -0.125 5.125 28 H 0.157 0.843 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.224 0.776 32 H 0.251 0.749 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.090 0.910 41 H -0.001 1.001 42 H 0.091 0.909 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.507 -13.106 13.060 19.967 hybrid contribution -0.215 0.672 -1.142 1.342 sum -7.723 -12.434 11.918 18.876 Atomic orbital electron populations 1.23397 0.74816 1.06382 1.02492 1.86232 1.24521 1.19543 1.89120 1.22041 0.90884 0.86124 1.00424 1.22420 0.94827 0.94789 1.05193 1.23954 0.86678 0.94078 1.07549 1.16489 0.85193 0.81907 0.77187 1.90857 1.27042 1.71561 1.50839 1.45776 1.10571 1.04835 1.72182 1.21665 0.83982 0.90009 0.96273 1.22479 0.99359 0.98134 0.94556 1.22509 1.02841 0.92485 0.96903 1.22778 0.98506 0.98657 0.96413 1.22073 0.97347 0.90341 0.85573 0.92320 1.44712 1.81607 1.03781 1.03506 1.19360 1.38737 0.84832 0.92284 0.89684 1.25561 1.02948 1.00952 0.96655 1.70048 1.55830 1.30644 1.03596 0.85192 0.78002 0.79844 0.76531 1.20288 1.22660 1.20573 1.21665 0.96422 0.84898 0.93618 1.23178 0.98791 0.99212 0.95783 1.84959 1.11808 1.29722 1.68732 1.73980 1.16117 0.97079 1.25364 0.84343 0.91910 0.92323 0.77584 0.74934 0.90807 0.91122 0.90178 0.90008 0.93008 0.91523 0.94668 0.90962 1.00070 0.90889 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.73 113.37 1.22 1.53 16 2 O -0.29 -5.85 10.57 -90.55 -0.96 -6.80 16 3 C 0.20 4.78 8.00 85.78 0.69 5.47 16 4 C -0.15 -3.44 10.97 22.80 0.25 -3.19 16 5 C -0.06 -1.44 7.29 24.36 0.18 -1.27 16 6 C 0.61 17.64 7.01 86.70 0.61 18.25 16 7 O -0.53 -17.37 14.72 -3.96 -0.06 -17.43 16 8 N -0.68 -20.00 5.22 -418.91 -2.19 -22.19 16 9 C 0.17 5.47 0.74 5.19 0.00 5.47 16 10 C -0.11 -2.92 5.41 31.64 0.17 -2.75 16 11 C -0.11 -2.67 6.87 32.04 0.22 -2.45 16 12 C -0.12 -4.01 6.22 31.80 0.20 -3.81 16 13 C 0.15 5.67 3.67 46.24 0.17 5.84 16 14 H 0.06 2.08 7.96 -2.39 -0.02 2.06 16 15 N -0.61 -29.52 3.03 -663.70 -2.01 -31.53 16 16 C -0.22 -11.85 10.01 84.03 0.84 -11.01 16 17 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 18 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 19 N -0.95 -56.30 10.07 21.65 0.22 -56.08 16 20 Si 0.98 44.98 29.55 68.60 2.03 47.01 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 24 C 0.16 7.83 5.91 86.85 0.51 8.34 16 25 C -0.13 -5.12 5.71 31.89 0.18 -4.93 16 26 O 0.11 2.92 11.03 65.65 0.72 3.64 16 27 N -0.40 -10.24 11.50 -172.01 -1.98 -12.22 16 28 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.21 3.90 8.06 -2.91 -0.02 3.87 16 32 H 0.41 10.99 8.31 -92.71 -0.77 10.22 16 33 H 0.07 1.89 7.58 -2.39 -0.02 1.87 16 34 H 0.07 2.00 7.37 -2.38 -0.02 1.99 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.05 1.93 8.09 -2.39 -0.02 1.91 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 40 H 0.07 4.12 5.82 -2.39 -0.01 4.10 16 41 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 42 H 0.07 2.83 7.63 -2.38 -0.02 2.82 16 43 H 0.07 2.68 6.53 -2.39 -0.02 2.66 16 Total: -1.00 -65.93 351.50 1.76 -64.18 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.28 Total: 19.30 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 5.70 Total: 12.13 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -5.96 Total: -122.02 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.29 Total: -20.59 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -65.93 1.76 -64.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990325679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.146 kcal (2) G-P(sol) polarization free energy of solvation -65.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds