Wall clock time and date at job start Tue Mar 31 2020 13:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35733 * 116.99985 * 2 1 4 4 C 1.41849 * 126.78555 * 180.02562 * 3 2 1 5 5 C 1.36670 * 103.81175 * 180.02562 * 4 3 2 6 6 C 1.47540 * 126.88137 * 179.97438 * 5 4 3 7 7 O 1.21585 * 119.99586 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00076 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99972 * 179.97438 * 8 6 5 10 10 C 1.55234 * 113.16958 * 60.04450 * 9 8 6 11 11 C 1.54226 * 106.82162 * 120.09905 * 10 9 8 12 12 C 1.54754 * 104.15336 * 25.64257 * 11 10 9 13 13 C 1.54770 * 103.21994 * 322.19000 * 12 11 10 14 14 H 1.09000 * 111.86836 * 274.14325 * 13 12 11 15 15 N 1.46974 * 108.68978 * 150.19429 * 13 12 11 16 16 C 1.36935 * 125.58145 * 64.90554 * 15 13 12 17 17 H 1.08010 * 119.99844 * 347.72534 * 16 15 13 18 18 C 1.38813 * 120.00551 * 167.72582 * 16 15 13 19 19 N 1.31614 * 120.00019 * 326.20862 * 18 16 15 20 20 Si 1.86803 * 120.00194 * 146.20378 * 18 16 15 21 21 H 1.48496 * 109.46820 * 60.00133 * 20 18 16 22 22 H 1.48492 * 109.47351 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46783 * 300.00276 * 20 18 16 24 24 C 1.47371 * 108.84152 * 245.16249 * 15 13 12 25 25 C 1.54611 * 104.94825 * 24.33537 * 24 15 13 26 26 O 1.34659 * 106.23645 * 0.23611 * 5 4 3 27 27 N 1.20875 * 111.63595 * 359.56361 * 26 5 4 28 28 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47002 * 300.00007 * 1 2 3 30 30 H 1.08993 * 109.47258 * 60.00482 * 1 2 3 31 31 H 1.08007 * 128.09748 * 0.02826 * 4 3 2 32 32 H 0.97004 * 120.00249 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.36703 * 1.06439 * 10 9 8 34 34 H 1.08996 * 110.56298 * 239.79005 * 10 9 8 35 35 H 1.09001 * 110.48890 * 266.97508 * 11 10 9 36 36 H 1.09000 * 110.60984 * 144.37112 * 11 10 9 37 37 H 1.09000 * 110.66664 * 203.75639 * 12 11 10 38 38 H 1.08999 * 110.66946 * 80.62847 * 12 11 10 39 39 H 0.97002 * 119.99604 * 354.24816 * 19 18 16 40 40 H 1.09010 * 110.36793 * 143.27399 * 24 15 13 41 41 H 1.08997 * 110.37251 * 265.59864 * 24 15 13 42 42 H 1.08997 * 111.07902 * 205.02585 * 25 24 15 43 43 H 1.08993 * 110.78356 * 81.35147 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 -0.0005 5 6 3.5390 2.8138 0.0003 6 6 4.7784 3.6142 0.0008 7 8 5.8603 3.0594 0.0009 8 7 4.7113 4.9603 0.0011 9 6 5.9420 5.7550 0.0021 10 6 6.8425 5.4881 -1.2339 11 6 6.9942 6.8325 -1.9743 12 6 6.7787 7.8977 -0.8726 13 6 5.6609 7.2808 0.0024 14 1 4.6684 7.5117 -0.3846 15 7 5.8312 7.7508 1.3844 16 6 5.7106 9.0483 1.8053 17 1 5.6691 9.8491 1.0817 18 6 5.6418 9.3345 3.1619 19 7 5.0469 8.4947 3.9823 20 14 6.3936 10.9115 3.8232 21 1 5.7426 12.0792 3.1767 22 1 6.1878 10.9800 5.2922 23 1 7.8485 10.9287 3.5262 24 6 6.1591 6.5982 2.2422 25 6 6.7840 5.5553 1.2870 26 8 2.2758 3.2802 0.0066 27 7 1.4685 2.3805 0.0009 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 4.2442 0.7261 -0.0014 32 1 3.8481 5.4029 0.0014 33 1 6.3590 4.7575 -1.8823 34 1 7.8205 5.1210 -0.9228 35 1 6.2355 6.9279 -2.7511 36 1 7.9920 6.9237 -2.4034 37 1 6.4496 8.8409 -1.3086 38 1 7.6893 8.0387 -0.2904 39 1 4.5843 7.7182 3.6300 40 1 6.8767 6.8884 3.0097 41 1 5.2550 6.1962 2.6995 42 1 6.6652 4.5448 1.6780 43 1 7.8347 5.7795 1.1036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990325689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:21 Heat of formation + Delta-G solvation = 25.312018 kcal Electronic energy + Delta-G solvation = -27842.398954 eV Core-core repulsion = 23892.580450 eV Total energy + Delta-G solvation = -3949.818504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.17909 -40.38293 -39.16239 -38.36581 -34.57551 -33.85648 -33.38578 -32.12080 -31.48024 -29.82528 -27.98064 -26.66675 -26.44883 -24.06941 -23.79814 -23.50805 -21.39751 -20.32333 -20.19185 -19.10052 -18.70366 -18.15204 -17.50158 -17.09820 -16.46866 -15.85284 -15.84451 -15.33382 -15.16437 -14.58782 -14.49537 -13.86916 -13.75396 -13.66764 -13.50068 -13.12076 -12.67948 -12.56818 -12.21650 -12.01671 -11.87984 -11.67158 -11.58110 -11.02810 -10.70989 -10.63748 -10.56374 -10.35793 -10.29995 -10.07987 -10.02292 -9.98560 -9.94768 -9.60991 -9.60077 -8.91380 -8.34179 -6.99937 -6.15375 -3.10017 0.58984 1.86451 2.36434 2.44192 2.91730 3.26338 3.50405 3.55778 3.72808 3.84906 4.50746 4.55062 4.61182 4.74358 4.80375 4.84550 4.96253 4.97372 5.13057 5.13723 5.27318 5.43582 5.52484 5.60218 5.66072 5.76551 5.89606 5.98113 6.05108 6.13313 6.27400 6.28084 6.36810 6.48924 6.60479 6.64494 6.73306 6.89555 7.01656 7.06372 7.36904 7.78434 7.82349 8.00827 8.47494 8.98610 9.80759 10.35131 11.18648 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.003439 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.149305 B = 8140.801662 C = 9167.043057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.203 3.797 4 C -0.158 4.158 5 C -0.051 4.051 6 C 0.603 3.397 7 O -0.505 6.505 8 N -0.684 5.684 9 C 0.157 3.843 10 C -0.110 4.110 11 C -0.125 4.125 12 C -0.125 4.125 13 C 0.162 3.838 14 H 0.048 0.952 15 N -0.594 5.594 16 C -0.342 4.342 17 H 0.067 0.933 18 C -0.020 4.020 19 N -0.906 5.906 20 Si 1.055 2.945 21 H -0.294 1.294 22 H -0.287 1.287 23 H -0.294 1.294 24 C 0.144 3.856 25 C -0.133 4.133 26 O 0.119 5.881 27 N -0.389 5.389 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.190 0.810 32 H 0.409 0.591 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.268 0.732 40 H 0.054 0.946 41 H 0.022 0.978 42 H 0.071 0.929 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -13.552 -10.966 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.188 6.188 3 C 0.006 3.994 4 C -0.180 4.180 5 C -0.117 4.117 6 C 0.386 3.614 7 O -0.381 6.381 8 N -0.334 5.334 9 C 0.071 3.929 10 C -0.149 4.149 11 C -0.163 4.163 12 C -0.166 4.166 13 C 0.054 3.946 14 H 0.066 0.934 15 N -0.319 5.319 16 C -0.469 4.469 17 H 0.085 0.915 18 C -0.223 4.223 19 N -0.546 5.546 20 Si 0.885 3.115 21 H -0.221 1.221 22 H -0.212 1.212 23 H -0.222 1.222 24 C 0.018 3.982 25 C -0.172 4.172 26 O 0.052 5.948 27 N -0.113 5.113 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.207 0.793 32 H 0.245 0.755 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.090 0.910 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.108 -12.863 -9.509 16.515 hybrid contribution -0.573 -1.085 -1.372 1.840 sum -4.681 -13.948 -10.882 18.299 Atomic orbital electron populations 1.23106 0.76565 1.04248 1.02547 1.86215 1.22773 1.20381 1.89407 1.21893 0.90654 0.85839 1.01054 1.22154 0.94377 0.94918 1.06585 1.24227 0.87097 0.93912 1.06474 1.16459 0.84994 0.82108 0.77875 1.90874 1.26124 1.71217 1.49863 1.45793 1.10698 1.04679 1.72233 1.22021 0.83562 0.91055 0.96259 1.22538 0.99501 0.97348 0.95477 1.22361 1.00993 0.95023 0.97923 1.22871 1.00375 0.97215 0.96103 1.21788 0.96424 0.88092 0.88266 0.93408 1.44589 1.81605 1.04093 1.01595 1.19631 1.52301 0.81344 0.93587 0.91495 1.25615 0.99279 1.04689 0.92714 1.70795 1.29863 1.15576 1.38352 0.83670 0.76569 0.75177 0.76123 1.22076 1.21248 1.22159 1.21494 0.96900 0.86711 0.93047 1.23106 0.98949 0.99966 0.95175 1.84975 1.11860 1.29614 1.68309 1.74007 1.15921 0.96672 1.24705 0.87493 0.92040 0.92121 0.79258 0.75503 0.92124 0.90730 0.92170 0.91937 0.92077 0.90661 0.92096 0.92814 0.96018 0.90992 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.73 101.05 1.08 1.31 16 2 O -0.28 -3.09 10.57 -18.91 -0.20 -3.29 16 3 C 0.20 2.52 8.00 -16.72 -0.13 2.39 16 4 C -0.16 -1.90 10.97 -38.77 -0.43 -2.32 16 5 C -0.05 -0.67 7.29 -36.36 -0.26 -0.93 16 6 C 0.60 8.83 7.03 -12.47 -0.09 8.75 16 7 O -0.51 -8.37 14.86 5.29 0.08 -8.29 16 8 N -0.68 -10.18 5.27 -45.57 -0.24 -10.42 16 9 C 0.16 2.59 0.78 -128.49 -0.10 2.49 16 10 C -0.11 -1.60 5.34 -24.91 -0.13 -1.73 16 11 C -0.12 -1.71 6.84 -25.17 -0.17 -1.88 16 12 C -0.13 -2.13 6.22 -24.88 -0.15 -2.29 16 13 C 0.16 3.08 3.61 -65.61 -0.24 2.84 16 14 H 0.05 0.92 7.97 -51.93 -0.41 0.51 16 15 N -0.59 -14.00 2.96 -161.29 -0.48 -14.48 16 16 C -0.34 -9.15 9.68 -15.06 -0.15 -9.30 16 17 H 0.07 1.80 8.02 -52.48 -0.42 1.38 16 18 C -0.02 -0.56 4.95 -17.43 -0.09 -0.65 16 19 N -0.91 -26.71 12.87 55.49 0.71 -25.99 16 20 Si 1.05 24.85 30.03 -169.99 -5.10 19.74 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.14 3.25 5.32 -2.72 -0.01 3.24 16 25 C -0.13 -2.44 5.80 -24.88 -0.14 -2.59 16 26 O 0.12 1.58 11.03 15.51 0.17 1.75 16 27 N -0.39 -5.19 11.50 30.47 0.35 -4.84 16 28 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.19 1.92 8.06 -52.48 -0.42 1.50 16 32 H 0.41 5.65 8.31 -40.82 -0.34 5.31 16 33 H 0.06 0.86 7.47 -51.93 -0.39 0.47 16 34 H 0.07 1.09 7.41 -51.93 -0.38 0.71 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 39 H 0.27 7.95 6.46 -40.82 -0.26 7.68 16 40 H 0.05 1.35 7.81 -51.92 -0.41 0.94 16 41 H 0.02 0.53 7.04 -51.93 -0.37 0.16 16 42 H 0.07 1.31 6.84 -51.93 -0.36 0.96 16 43 H 0.08 1.38 7.60 -51.93 -0.39 0.99 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -30.90 352.88 -6.31 -37.21 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.91 Total: 3.96 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.01 Total: -0.67 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.35 Total: -55.73 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.05 Total: -9.83 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.10 Total: 19.74 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.90 -6.31 -37.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990325689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.524 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds