Wall clock time and date at job start Tue Mar 31 2020 13:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35733 * 116.99985 * 2 1 4 4 C 1.41849 * 126.78555 * 180.02562 * 3 2 1 5 5 C 1.36670 * 103.81175 * 180.02562 * 4 3 2 6 6 C 1.47540 * 126.88137 * 179.97438 * 5 4 3 7 7 O 1.21585 * 119.99586 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00076 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99972 * 179.97438 * 8 6 5 10 10 C 1.55234 * 113.16958 * 60.04450 * 9 8 6 11 11 C 1.54226 * 106.82162 * 120.09905 * 10 9 8 12 12 C 1.54754 * 104.15336 * 25.64257 * 11 10 9 13 13 C 1.54770 * 103.21994 * 322.19000 * 12 11 10 14 14 H 1.09000 * 111.86836 * 274.14325 * 13 12 11 15 15 N 1.46974 * 108.68978 * 150.19429 * 13 12 11 16 16 C 1.36935 * 125.58145 * 64.90554 * 15 13 12 17 17 H 1.08010 * 119.99844 * 347.72534 * 16 15 13 18 18 C 1.38813 * 120.00551 * 167.72582 * 16 15 13 19 19 N 1.31614 * 120.00019 * 326.20862 * 18 16 15 20 20 Si 1.86803 * 120.00194 * 146.20378 * 18 16 15 21 21 H 1.48496 * 109.46820 * 60.00133 * 20 18 16 22 22 H 1.48492 * 109.47351 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46783 * 300.00276 * 20 18 16 24 24 C 1.47371 * 108.84152 * 245.16249 * 15 13 12 25 25 C 1.54611 * 104.94825 * 24.33537 * 24 15 13 26 26 O 1.34659 * 106.23645 * 0.23611 * 5 4 3 27 27 N 1.20875 * 111.63595 * 359.56361 * 26 5 4 28 28 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47002 * 300.00007 * 1 2 3 30 30 H 1.08993 * 109.47258 * 60.00482 * 1 2 3 31 31 H 1.08007 * 128.09748 * 0.02826 * 4 3 2 32 32 H 0.97004 * 120.00249 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.36703 * 1.06439 * 10 9 8 34 34 H 1.08996 * 110.56298 * 239.79005 * 10 9 8 35 35 H 1.09001 * 110.48890 * 266.97508 * 11 10 9 36 36 H 1.09000 * 110.60984 * 144.37112 * 11 10 9 37 37 H 1.09000 * 110.66664 * 203.75639 * 12 11 10 38 38 H 1.08999 * 110.66946 * 80.62847 * 12 11 10 39 39 H 0.97002 * 119.99604 * 354.24816 * 19 18 16 40 40 H 1.09010 * 110.36793 * 143.27399 * 24 15 13 41 41 H 1.08997 * 110.37251 * 265.59864 * 24 15 13 42 42 H 1.08997 * 111.07902 * 205.02585 * 25 24 15 43 43 H 1.08993 * 110.78356 * 81.35147 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4505 -0.0005 5 6 3.5390 2.8138 0.0003 6 6 4.7784 3.6142 0.0008 7 8 5.8603 3.0594 0.0009 8 7 4.7113 4.9603 0.0011 9 6 5.9420 5.7550 0.0021 10 6 6.8425 5.4881 -1.2339 11 6 6.9942 6.8325 -1.9743 12 6 6.7787 7.8977 -0.8726 13 6 5.6609 7.2808 0.0024 14 1 4.6684 7.5117 -0.3846 15 7 5.8312 7.7508 1.3844 16 6 5.7106 9.0483 1.8053 17 1 5.6691 9.8491 1.0817 18 6 5.6418 9.3345 3.1619 19 7 5.0469 8.4947 3.9823 20 14 6.3936 10.9115 3.8232 21 1 5.7426 12.0792 3.1767 22 1 6.1878 10.9800 5.2922 23 1 7.8485 10.9287 3.5262 24 6 6.1591 6.5982 2.2422 25 6 6.7840 5.5553 1.2870 26 8 2.2758 3.2802 0.0066 27 7 1.4685 2.3805 0.0009 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 4.2442 0.7261 -0.0014 32 1 3.8481 5.4029 0.0014 33 1 6.3590 4.7575 -1.8823 34 1 7.8205 5.1210 -0.9228 35 1 6.2355 6.9279 -2.7511 36 1 7.9920 6.9237 -2.4034 37 1 6.4496 8.8409 -1.3086 38 1 7.6893 8.0387 -0.2904 39 1 4.5843 7.7182 3.6300 40 1 6.8767 6.8884 3.0097 41 1 5.2550 6.1962 2.6995 42 1 6.6652 4.5448 1.6780 43 1 7.8347 5.7795 1.1036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990325689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:20 Heat of formation + Delta-G solvation = 3.334197 kcal Electronic energy + Delta-G solvation = -27843.351984 eV Core-core repulsion = 23892.580450 eV Total energy + Delta-G solvation = -3950.771533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.17172 -41.72671 -39.99465 -39.73524 -36.28962 -35.08121 -34.37845 -33.56246 -32.93637 -31.42801 -28.67910 -28.23470 -27.87738 -25.66496 -25.18338 -24.49981 -22.65594 -21.81518 -21.47907 -20.42821 -19.99824 -19.35020 -19.14641 -18.00641 -17.74146 -17.01824 -16.76133 -16.60025 -16.33672 -15.97711 -15.60229 -15.54123 -15.24572 -15.09214 -14.82681 -14.64388 -14.23508 -13.56713 -13.25944 -13.25414 -13.13245 -12.95604 -12.71095 -12.53570 -12.39994 -12.23259 -11.97922 -11.93836 -11.86426 -11.70798 -11.57320 -11.34332 -11.30615 -11.06778 -10.52979 -10.40578 -10.19909 -8.98478 -8.31887 -5.21657 -0.45323 0.89748 1.35103 1.50719 1.59709 1.67157 1.77875 1.85539 2.16577 2.66563 2.90483 3.17202 3.24463 3.50650 3.57918 3.70733 3.79985 3.85238 3.94738 4.21359 4.25239 4.25934 4.29553 4.37085 4.45781 4.53698 4.55966 4.60865 4.70406 4.80058 4.82673 4.98088 5.06548 5.08981 5.18850 5.27674 5.32176 5.48354 5.55124 5.76721 5.77350 6.17351 6.34660 6.75543 6.87514 6.92022 7.75883 8.34499 9.02049 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.003439 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.149305 B = 8140.801662 C = 9167.043057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.287 6.287 3 C 0.203 3.797 4 C -0.147 4.147 5 C -0.059 4.059 6 C 0.611 3.389 7 O -0.523 6.523 8 N -0.685 5.685 9 C 0.166 3.834 10 C -0.103 4.103 11 C -0.110 4.110 12 C -0.121 4.121 13 C 0.152 3.848 14 H 0.048 0.952 15 N -0.610 5.610 16 C -0.338 4.338 17 H 0.065 0.935 18 C -0.077 4.077 19 N -0.939 5.939 20 Si 1.105 2.895 21 H -0.275 1.275 22 H -0.297 1.297 23 H -0.283 1.283 24 C 0.152 3.848 25 C -0.120 4.120 26 O 0.111 5.889 27 N -0.400 5.400 28 H 0.139 0.861 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.209 0.791 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.253 0.747 40 H 0.019 0.981 41 H -0.002 1.002 42 H 0.074 0.926 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 -14.443 -13.060 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.193 6.193 3 C 0.005 3.995 4 C -0.169 4.169 5 C -0.125 4.125 6 C 0.394 3.606 7 O -0.399 6.399 8 N -0.335 5.335 9 C 0.080 3.920 10 C -0.142 4.142 11 C -0.148 4.148 12 C -0.161 4.161 13 C 0.046 3.954 14 H 0.065 0.935 15 N -0.336 5.336 16 C -0.466 4.466 17 H 0.083 0.917 18 C -0.273 4.273 19 N -0.581 5.581 20 Si 0.931 3.069 21 H -0.200 1.200 22 H -0.224 1.224 23 H -0.210 1.210 24 C 0.026 3.974 25 C -0.159 4.159 26 O 0.046 5.954 27 N -0.126 5.126 28 H 0.157 0.843 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.226 0.774 32 H 0.250 0.750 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.037 0.963 41 H 0.016 0.984 42 H 0.093 0.907 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.756 -13.761 -11.656 18.421 hybrid contribution -0.781 -0.881 -0.747 1.395 sum -4.537 -14.642 -12.403 19.719 Atomic orbital electron populations 1.23400 0.74807 1.06419 1.02472 1.86231 1.24519 1.19494 1.89103 1.22058 0.90929 0.86115 1.00370 1.22435 0.94812 0.94718 1.04958 1.23945 0.86675 0.94111 1.07792 1.16470 0.85258 0.81765 0.77075 1.90862 1.26922 1.71473 1.50690 1.45744 1.10406 1.04927 1.72427 1.21878 0.84139 0.89647 0.96341 1.22506 0.99065 0.98217 0.94389 1.22306 1.02996 0.92597 0.96911 1.22734 0.98406 0.98357 0.96593 1.22052 0.97206 0.90100 0.86079 0.93481 1.44772 1.81617 1.03509 1.03659 1.19861 1.50287 0.82873 0.93559 0.91700 1.26866 0.99757 1.07102 0.93601 1.70912 1.32296 1.16271 1.38648 0.82980 0.76376 0.72643 0.74945 1.20033 1.22364 1.20994 1.21301 0.95239 0.87651 0.93167 1.22982 0.99394 0.98409 0.95082 1.84966 1.11876 1.29786 1.68776 1.73991 1.16133 0.97125 1.25324 0.84271 0.92349 0.91946 0.77390 0.75006 0.91060 0.90387 0.90362 0.89679 0.92033 0.92473 0.93728 0.96301 0.98406 0.90717 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.73 113.37 1.22 1.53 16 2 O -0.29 -5.79 10.57 -90.56 -0.96 -6.75 16 3 C 0.20 4.75 8.00 85.78 0.69 5.44 16 4 C -0.15 -3.29 10.97 22.80 0.25 -3.04 16 5 C -0.06 -1.49 7.29 24.36 0.18 -1.31 16 6 C 0.61 17.17 7.03 86.70 0.61 17.78 16 7 O -0.52 -16.45 14.86 -3.98 -0.06 -16.51 16 8 N -0.69 -19.82 5.27 -416.36 -2.19 -22.02 16 9 C 0.17 5.31 0.78 5.76 0.00 5.31 16 10 C -0.10 -2.72 5.34 31.78 0.17 -2.55 16 11 C -0.11 -2.64 6.84 31.61 0.22 -2.43 16 12 C -0.12 -3.92 6.22 31.80 0.20 -3.72 16 13 C 0.15 5.69 3.61 46.24 0.17 5.86 16 14 H 0.05 1.79 7.97 -2.39 -0.02 1.77 16 15 N -0.61 -29.36 2.96 -664.20 -1.97 -31.33 16 16 C -0.34 -18.38 9.68 84.03 0.81 -17.57 16 17 H 0.07 3.50 8.02 -2.91 -0.02 3.47 16 18 C -0.08 -4.34 4.95 84.86 0.42 -3.92 16 19 N -0.94 -57.46 12.87 21.65 0.28 -57.18 16 20 Si 1.11 50.93 30.03 68.60 2.06 52.99 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 22 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 C 0.15 7.15 5.32 86.76 0.46 7.61 16 25 C -0.12 -4.38 5.80 31.80 0.18 -4.20 16 26 O 0.11 2.90 11.03 65.67 0.72 3.62 16 27 N -0.40 -10.33 11.50 -172.03 -1.98 -12.31 16 28 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.21 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.41 11.29 8.31 -92.71 -0.77 10.52 16 33 H 0.07 1.78 7.47 -2.39 -0.02 1.76 16 34 H 0.08 2.05 7.41 -2.39 -0.02 2.03 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 2.06 8.09 -2.39 -0.02 2.04 16 39 H 0.25 15.77 6.46 -92.71 -0.60 15.17 16 40 H 0.02 0.99 7.81 -2.38 -0.02 0.97 16 41 H 0.00 -0.09 7.04 -2.39 -0.02 -0.11 16 42 H 0.07 2.71 6.84 -2.39 -0.02 2.69 16 43 H 0.08 2.98 7.60 -2.39 -0.02 2.96 16 Total: -1.00 -67.90 352.88 1.92 -65.98 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.44 Total: 18.71 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 5.57 Total: 4.79 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -5.86 Total: -122.83 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.29 Total: -19.64 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.06 Total: 52.99 kcal Total: -67.90 1.92 -65.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990325689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.317 kcal (2) G-P(sol) polarization free energy of solvation -67.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds