Wall clock time and date at job start Tue Mar 31 2020 13:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35501 * 116.99846 * 2 1 4 4 C 1.39215 * 120.90006 * 359.96893 * 3 2 1 5 5 C 1.37902 * 119.38870 * 180.02562 * 4 3 2 6 6 N 1.32079 * 121.29184 * 0.02562 * 5 4 3 7 7 C 1.32185 * 121.98180 * 359.69880 * 6 5 4 8 8 O 1.35425 * 119.78036 * 180.29745 * 7 6 5 9 9 C 1.40294 * 120.43766 * 0.58347 * 7 6 5 10 10 C 1.47231 * 120.64869 * 179.70979 * 9 7 6 11 11 O 1.21621 * 120.00168 * 269.71948 * 10 9 7 12 12 N 1.34780 * 120.00489 * 89.72424 * 10 9 7 13 13 C 1.46919 * 120.63395 * 179.97438 * 12 10 9 14 14 C 1.53195 * 108.89273 * 126.29715 * 13 12 10 15 15 C 1.53346 * 109.14901 * 54.57640 * 14 13 12 16 16 N 1.46500 * 109.41956 * 178.67533 * 15 14 13 17 17 C 1.36944 * 119.99740 * 275.13099 * 16 15 14 18 18 H 1.08000 * 119.99960 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99527 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00233 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99726 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47088 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47209 * 119.99833 * 21 19 17 24 24 H 1.48499 * 109.47159 * 240.00030 * 21 19 17 25 25 C 1.53034 * 109.61010 * 298.71225 * 15 14 13 26 26 C 1.46933 * 120.62602 * 359.97139 * 12 10 9 27 27 H 1.09003 * 109.47242 * 300.00467 * 1 2 3 28 28 H 1.08998 * 109.46827 * 60.00765 * 1 2 3 29 29 H 1.09006 * 109.46927 * 180.02562 * 1 2 3 30 30 H 1.07994 * 120.30756 * 0.05685 * 4 3 2 31 31 H 1.07999 * 119.35249 * 179.97438 * 5 4 3 32 32 H 0.96704 * 113.99418 * 270.28100 * 8 7 6 33 33 H 1.09002 * 109.58751 * 246.15665 * 13 12 10 34 34 H 1.08996 * 109.58750 * 6.43850 * 13 12 10 35 35 H 1.08997 * 109.49914 * 174.65962 * 14 13 12 36 36 H 1.09002 * 109.49585 * 294.75599 * 14 13 12 37 37 H 1.09001 * 109.42242 * 58.75065 * 15 14 13 38 38 H 0.96989 * 120.00309 * 95.12660 * 16 15 14 39 39 H 0.97006 * 119.99415 * 179.97438 * 20 19 17 40 40 H 1.08994 * 109.50232 * 301.42239 * 25 15 14 41 41 H 1.09007 * 109.52628 * 181.33900 * 25 15 14 42 42 H 1.08994 * 109.58580 * 353.42544 * 26 12 10 43 43 H 1.09006 * 109.57831 * 113.70037 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3043 2.3866 -0.0006 5 6 1.9626 3.5984 -0.0012 6 7 3.2818 3.6625 -0.0016 7 6 4.0355 2.5766 0.0044 8 8 5.3846 2.6943 0.0098 9 6 3.4471 1.3031 -0.0009 10 6 4.2822 0.0905 -0.0007 11 8 4.6268 -0.4108 -1.0538 12 7 4.6648 -0.4642 1.1666 13 6 5.4976 -1.6745 1.1829 14 6 6.7361 -1.4128 2.0457 15 6 6.2909 -0.9338 3.4327 16 7 7.4701 -0.7119 4.2732 17 6 8.0311 -1.7582 4.9557 18 1 7.6040 -2.7468 4.8747 19 6 9.1488 -1.5480 5.7516 20 7 9.6697 -0.3433 5.8499 21 14 9.9146 -2.9754 6.6820 22 1 9.1468 -4.2159 6.4047 23 1 11.3216 -3.1549 6.2425 24 1 9.8837 -2.6900 8.1390 25 6 5.5078 0.3741 3.2976 26 6 4.2569 0.1300 2.4470 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 0.2249 2.3528 -0.0002 31 1 1.3880 4.5129 -0.0021 32 1 5.7797 2.7305 -0.8721 33 1 4.9285 -2.5040 1.6026 34 1 5.8055 -1.9199 0.1666 35 1 7.3130 -2.3324 2.1426 36 1 7.3509 -0.6448 1.5762 37 1 5.6556 -1.6916 3.8912 38 1 7.8535 0.1760 4.3462 39 1 10.4505 -0.1964 6.4064 40 1 6.1342 1.1252 2.8165 41 1 5.2124 0.7257 4.2862 42 1 3.7481 1.0766 2.2649 43 1 3.5847 -0.5516 2.9684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997188417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:57 Heat of formation + Delta-G solvation = -83.334874 kcal Electronic energy + Delta-G solvation = -27808.996853 eV Core-core repulsion = 23854.467066 eV Total energy + Delta-G solvation = -3954.529786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.28554 -40.73111 -39.85149 -38.70841 -37.84057 -36.17489 -33.96654 -33.11056 -32.05849 -31.54372 -30.87018 -28.43868 -26.85934 -25.73230 -24.21873 -24.06235 -23.88719 -21.92675 -20.61294 -20.15275 -19.19559 -18.73008 -18.62384 -18.06170 -17.47017 -16.88368 -16.69567 -16.36584 -15.90081 -15.77522 -15.58224 -15.48879 -15.41302 -15.08881 -14.72264 -14.36191 -14.16064 -13.90155 -13.59030 -13.44686 -13.13817 -12.93299 -12.87585 -12.66030 -12.53631 -12.46755 -12.24545 -12.12168 -11.98918 -11.70164 -11.53053 -11.30732 -10.91529 -10.57227 -10.11470 -10.03371 -9.77436 -9.01625 -7.93165 -5.22303 -0.32084 0.07470 1.36249 1.47974 1.48706 1.58619 1.87392 1.89795 2.41487 2.56645 2.73229 3.24354 3.39883 3.67132 3.74576 3.77931 3.80915 3.92122 4.06379 4.11542 4.26215 4.31973 4.33430 4.36833 4.39227 4.49333 4.54970 4.68174 4.74869 4.77577 4.81063 4.85370 4.93629 5.06930 5.23876 5.25006 5.46725 5.52371 5.54159 6.05400 6.26087 6.28652 6.40231 6.80393 6.96012 7.34360 8.09261 8.33015 9.30660 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.003153 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.378987 B = 8878.310376 C = 9289.357490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.209 3.791 4 C -0.257 4.257 5 C 0.175 3.825 6 N -0.544 5.544 7 C 0.372 3.628 8 O -0.488 6.488 9 C -0.251 4.251 10 C 0.585 3.415 11 O -0.579 6.579 12 N -0.591 5.591 13 C 0.121 3.879 14 C -0.136 4.136 15 C 0.176 3.824 16 N -0.737 5.737 17 C -0.236 4.236 18 H 0.079 0.921 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.972 3.028 22 H -0.264 1.264 23 H -0.297 1.297 24 H -0.294 1.294 25 C -0.127 4.127 26 C 0.128 3.872 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.191 0.809 31 H 0.210 0.790 32 H 0.421 0.579 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.371 0.629 39 H 0.250 0.750 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.395 5.732 -13.518 29.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.154 3.846 4 C -0.277 4.277 5 C 0.020 3.980 6 N -0.267 5.267 7 C 0.193 3.807 8 O -0.299 6.299 9 C -0.259 4.259 10 C 0.373 3.627 11 O -0.459 6.459 12 N -0.322 5.322 13 C -0.001 4.001 14 C -0.177 4.177 15 C 0.068 3.932 16 N -0.376 5.376 17 C -0.367 4.367 18 H 0.097 0.903 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.801 3.199 22 H -0.188 1.188 23 H -0.224 1.224 24 H -0.221 1.221 25 C -0.166 4.166 26 C 0.005 3.995 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.136 0.864 30 H 0.208 0.792 31 H 0.226 0.774 32 H 0.282 0.718 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.202 0.798 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.736 5.785 -13.386 28.715 hybrid contribution 0.979 -0.971 0.136 1.385 sum -23.757 4.815 -13.251 27.625 Atomic orbital electron populations 1.23614 0.74377 1.06382 1.03732 1.86083 1.25188 1.25835 1.86452 1.19232 0.89483 0.86597 0.89314 1.22558 1.03721 0.90886 1.10561 1.23208 0.87689 0.99264 0.87878 1.67399 1.08954 1.31577 1.18731 1.18899 0.84848 0.85715 0.91268 1.84679 1.14374 1.95126 1.35703 1.20194 0.92960 0.94432 1.18329 1.17907 0.78789 0.82842 0.83190 1.90740 1.58380 1.64619 1.32186 1.48109 1.50224 1.27825 1.06035 1.21603 0.91273 0.86266 1.00993 1.22490 0.96745 1.01168 0.97299 1.20437 0.87881 0.95518 0.89379 1.42660 1.32254 1.08613 1.54090 1.19677 1.07444 0.90484 1.19124 0.90316 1.25564 0.99824 0.98978 1.02628 1.69841 1.25516 1.21916 1.44956 0.85092 0.77786 0.79238 0.77771 1.18801 1.22427 1.22108 1.22043 0.96607 0.97762 1.00169 1.21678 0.96080 0.99106 0.82641 0.89815 0.90193 0.86449 0.79192 0.77398 0.71762 0.89541 0.90229 0.91730 0.94232 0.92838 0.79794 0.94153 0.93144 0.90248 0.89871 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.84 113.37 1.12 1.20 16 2 O -0.33 -6.17 10.03 -88.02 -0.88 -7.05 16 3 C 0.21 4.16 6.74 23.09 0.16 4.31 16 4 C -0.26 -3.02 9.09 22.42 0.20 -2.81 16 5 C 0.17 2.32 11.15 84.58 0.94 3.27 16 6 N -0.54 -12.07 10.37 -308.27 -3.20 -15.26 16 7 C 0.37 9.68 7.61 85.14 0.65 10.33 16 8 O -0.49 -13.36 13.02 -87.20 -1.13 -14.50 16 9 C -0.25 -6.67 3.67 -19.83 -0.07 -6.74 16 10 C 0.58 18.99 6.30 86.61 0.55 19.54 16 11 O -0.58 -22.43 16.52 -4.10 -0.07 -22.49 16 12 N -0.59 -18.21 2.97 -822.93 -2.45 -20.66 16 13 C 0.12 3.84 6.42 86.36 0.55 4.40 16 14 C -0.14 -5.10 5.69 30.78 0.18 -4.93 16 15 C 0.18 6.98 2.73 45.12 0.12 7.11 16 16 N -0.74 -37.65 5.12 -322.33 -1.65 -39.30 16 17 C -0.24 -13.07 9.93 84.03 0.83 -12.23 16 18 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 19 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 20 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 21 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 22 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 25 C -0.13 -4.28 5.55 30.68 0.17 -4.11 16 26 C 0.13 3.50 6.34 86.37 0.55 4.05 16 27 H 0.08 0.26 7.71 -2.39 -0.02 0.24 16 28 H 0.08 0.29 7.71 -2.39 -0.02 0.27 16 29 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.19 0.54 6.45 -2.91 -0.02 0.52 16 31 H 0.21 0.91 8.06 -2.91 -0.02 0.89 16 32 H 0.42 8.17 9.06 -74.05 -0.67 7.49 16 33 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.08 2.65 7.00 -2.39 -0.02 2.64 16 35 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 38 H 0.37 20.66 7.80 -92.72 -0.72 19.94 16 39 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 42 H 0.08 2.14 6.22 -2.39 -0.01 2.13 16 43 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -80.28 359.74 -0.99 -81.27 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.33 Total: 30.25 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 6.41 Total: 19.33 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -7.01 Total: -135.33 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -2.09 Total: -44.04 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -80.28 -0.99 -81.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997188417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.061 kcal (2) G-P(sol) polarization free energy of solvation -80.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds