Wall clock time and date at job start Tue Mar 31 2020 13:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36012 * 116.99687 * 2 1 4 4 C 1.35847 * 120.31990 * 359.97438 * 3 2 1 5 5 N 1.35436 * 120.78111 * 179.97438 * 4 3 2 6 6 H 0.97000 * 119.29953 * 179.97438 * 5 4 3 7 7 C 1.36432 * 121.40440 * 359.96196 * 5 4 3 8 8 C 1.48070 * 119.71421 * 180.02562 * 7 5 4 9 9 O 1.21521 * 120.00080 * 199.89609 * 8 7 5 10 10 N 1.34772 * 120.00480 * 19.89292 * 8 7 5 11 11 C 1.46499 * 119.99856 * 5.46679 * 10 8 7 12 12 C 1.46505 * 120.00426 * 185.46813 * 10 8 7 13 13 C 1.53784 * 113.69202 * 199.52719 * 12 10 8 14 14 C 1.53776 * 87.07905 * 89.12496 * 13 12 10 15 15 N 1.46505 * 113.61673 * 270.88358 * 14 13 12 16 16 C 1.36937 * 119.99614 * 257.24292 * 15 14 13 17 17 H 1.07994 * 120.00535 * 0.02562 * 16 15 14 18 18 C 1.38820 * 119.99562 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99962 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99705 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47185 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47061 * 120.00414 * 20 18 16 23 23 H 1.48500 * 109.46738 * 239.99958 * 20 18 16 24 24 C 1.53779 * 87.08384 * 25.43396 * 14 13 12 25 25 C 1.36175 * 120.56582 * 0.28951 * 7 5 4 26 26 C 1.41581 * 120.30806 * 179.97438 * 3 2 1 27 27 O 1.22265 * 120.65448 * 0.02562 * 26 3 2 28 28 H 1.09001 * 109.47243 * 60.00038 * 1 2 3 29 29 H 1.08998 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47524 * 300.00176 * 1 2 3 31 31 H 1.08008 * 119.61085 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.47617 * 264.22463 * 11 10 8 33 33 H 1.09007 * 109.47260 * 24.22506 * 11 10 8 34 34 H 1.09003 * 109.47132 * 144.22413 * 11 10 8 35 35 H 1.09002 * 112.84820 * 68.25612 * 12 10 8 36 36 H 1.08996 * 113.60965 * 203.67657 * 13 12 10 37 37 H 1.09000 * 113.60991 * 334.57748 * 13 12 10 38 38 H 1.09001 * 113.68898 * 139.99365 * 14 13 12 39 39 H 0.96993 * 120.00118 * 77.24469 * 15 14 13 40 40 H 0.96994 * 119.99436 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.61063 * 220.01825 * 24 14 13 42 42 H 1.08997 * 113.61467 * 89.11551 * 24 14 13 43 43 H 1.07997 * 120.40871 * 179.72731 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9180 3.5670 0.0000 6 1 1.3732 4.3696 -0.0008 7 6 3.2774 3.6828 0.0018 8 6 3.8995 5.0264 0.0029 9 8 5.0533 5.1621 -0.3537 10 7 3.1863 6.0991 0.3993 11 6 1.8371 5.9217 0.9418 12 6 3.7601 7.4424 0.2876 13 6 3.0704 8.4854 1.1829 14 6 4.0728 8.0907 2.2802 15 7 3.6127 6.9862 3.1257 16 6 3.1278 7.2407 4.3807 17 1 3.0841 8.2556 4.7472 18 6 2.6914 6.1942 5.1816 19 7 2.7442 4.9573 4.7348 20 14 2.0292 6.5415 6.8935 21 1 2.0748 8.0026 7.1549 22 1 0.6255 6.0660 6.9871 23 1 2.8603 5.8320 7.8990 24 6 5.0168 7.6491 1.1495 25 6 4.0669 2.5733 -0.0027 26 6 3.4599 1.2937 0.0005 27 8 4.1430 0.2797 0.0006 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2344 2.2974 -0.0014 32 1 1.1041 6.0684 0.1485 33 1 1.7376 4.9145 1.3466 34 1 1.6654 6.6503 1.7342 35 1 3.8815 7.7662 -0.7461 36 1 3.1894 9.5100 0.8307 37 1 2.0371 8.2374 1.4256 38 1 4.4473 8.9369 2.8562 39 1 3.6516 6.0746 2.7964 40 1 2.4396 4.2261 5.2945 41 1 5.5548 6.7260 1.3654 42 1 5.6679 8.4451 0.7884 43 1 5.1427 2.6679 -0.0057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999125140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:54 Heat of formation + Delta-G solvation = 15.175129 kcal Electronic energy + Delta-G solvation = -28280.754197 eV Core-core repulsion = 24330.496125 eV Total energy + Delta-G solvation = -3950.258072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60758 -40.17711 -38.50593 -37.66539 -37.50104 -34.60908 -33.32951 -31.50061 -30.68240 -29.97381 -27.73303 -27.38857 -25.37488 -24.97724 -23.87937 -23.12973 -22.50248 -20.73471 -19.19224 -18.35102 -17.92771 -17.46058 -17.12777 -16.27781 -16.13744 -16.04777 -15.63785 -15.30920 -14.83091 -14.65012 -14.36597 -14.20938 -13.92635 -13.74137 -13.30423 -13.16470 -13.05530 -13.03073 -12.70137 -12.30562 -11.90586 -11.63873 -11.50241 -11.48628 -11.27610 -10.99520 -10.91858 -10.38647 -10.32498 -10.13015 -9.82777 -9.68636 -9.36523 -9.32566 -9.03992 -8.50985 -7.56719 -7.14628 -5.94295 -3.24433 0.82919 1.25959 2.61833 2.73000 3.06168 3.24598 3.31247 3.38808 3.40935 3.83623 4.15750 4.42758 4.44184 4.68636 4.84230 4.94752 5.01018 5.02263 5.08308 5.14785 5.20356 5.31724 5.32799 5.34617 5.57080 5.68066 5.70889 5.82961 6.01086 6.03895 6.11257 6.23213 6.35744 6.39825 6.55547 6.65801 6.69787 6.75280 6.90641 7.20238 7.31223 7.57815 8.02726 8.15598 8.24255 9.36001 9.91589 10.27182 11.27106 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011077 B = 0.004813 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.142818 B = 5816.135556 C = 7316.989369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.289 6.289 3 C -0.036 4.036 4 C 0.028 3.972 5 N -0.567 5.567 6 H 0.427 0.573 7 C 0.136 3.864 8 C 0.560 3.440 9 O -0.506 6.506 10 N -0.578 5.578 11 C 0.033 3.967 12 C 0.125 3.875 13 C -0.182 4.182 14 C 0.163 3.837 15 N -0.705 5.705 16 C -0.247 4.247 17 H 0.073 0.927 18 C -0.008 4.008 19 N -0.928 5.928 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C -0.162 4.162 25 C -0.214 4.214 26 C 0.403 3.597 27 O -0.504 6.504 28 H 0.052 0.948 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.167 0.833 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.445 1.466 -12.307 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.201 6.201 3 C -0.087 4.087 4 C -0.100 4.100 5 N -0.189 5.189 6 H 0.275 0.725 7 C 0.023 3.977 8 C 0.345 3.655 9 O -0.380 6.380 10 N -0.310 5.310 11 C -0.109 4.109 12 C 0.023 3.977 13 C -0.223 4.223 14 C 0.051 3.949 15 N -0.345 5.345 16 C -0.378 4.378 17 H 0.091 0.909 18 C -0.205 4.205 19 N -0.575 5.575 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.202 4.202 25 C -0.241 4.241 26 C 0.294 3.706 27 O -0.389 6.389 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.185 0.815 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.138 0.862 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.459 0.860 -12.296 14.408 hybrid contribution -1.187 0.340 0.990 1.582 sum -8.646 1.200 -11.306 14.284 Atomic orbital electron populations 1.23107 0.79446 1.04258 1.00911 1.86260 1.20118 1.24502 1.89227 1.20397 0.94814 0.84572 1.08936 1.21671 0.98731 0.84611 1.04963 1.42124 1.05512 1.09142 1.62168 0.72490 1.20288 0.83007 0.95644 0.98750 1.17918 0.86038 0.82658 0.78855 1.90818 1.15401 1.84375 1.47415 1.47406 1.16390 1.06016 1.61225 1.22618 0.81868 1.06437 0.99989 1.21897 0.96585 0.81136 0.98111 1.24250 1.01815 0.96949 0.99312 1.21187 0.91787 0.92240 0.89695 1.42309 1.74084 1.04107 1.14003 1.19321 1.34113 0.93249 0.91116 0.90906 1.24750 1.01931 0.95227 0.98574 1.69655 1.52775 0.98030 1.37088 0.86135 0.78187 0.77379 0.84537 1.20534 1.21898 1.21778 1.23728 0.96414 1.02523 0.97487 1.22385 1.02075 0.90431 1.09255 1.16741 0.86076 0.89744 0.78061 1.90830 1.65769 1.37560 1.44726 0.92977 0.88115 0.92615 0.81545 0.92860 0.89033 0.86174 0.90466 0.89728 0.90311 0.91868 0.77906 0.93373 0.90308 0.89495 0.81699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.29 -4.24 10.33 -35.61 -0.37 -4.60 16 3 C -0.04 -0.55 6.71 -39.16 -0.26 -0.81 16 4 C 0.03 0.31 10.22 -16.82 -0.17 0.14 16 5 N -0.57 -6.65 3.97 -9.58 -0.04 -6.69 16 6 H 0.43 3.95 4.46 -40.82 -0.18 3.77 16 7 C 0.14 2.07 6.28 -82.53 -0.52 1.55 16 8 C 0.56 9.20 7.34 -12.23 -0.09 9.11 16 9 O -0.51 -9.57 15.14 5.35 0.08 -9.49 16 10 N -0.58 -8.50 2.08 -174.02 -0.36 -8.86 16 11 C 0.03 0.43 7.16 59.85 0.43 0.86 16 12 C 0.13 1.80 4.18 -67.11 -0.28 1.52 16 13 C -0.18 -2.56 7.16 -25.92 -0.19 -2.74 16 14 C 0.16 2.92 4.55 -67.12 -0.31 2.62 16 15 N -0.71 -15.79 3.89 -52.64 -0.20 -16.00 16 16 C -0.25 -6.22 9.98 -15.06 -0.15 -6.37 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 19 N -0.93 -25.61 13.06 55.49 0.72 -24.89 16 20 Si 0.91 20.96 29.55 -169.99 -5.02 15.93 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 C -0.16 -2.63 7.09 -25.92 -0.18 -2.82 16 25 C -0.21 -3.69 9.52 -39.03 -0.37 -4.06 16 26 C 0.40 7.45 6.78 -37.02 -0.25 7.20 16 27 O -0.50 -11.10 17.71 -11.15 -0.20 -11.30 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 31 H 0.17 1.16 6.21 -52.48 -0.33 0.84 16 32 H 0.05 0.46 7.43 -51.93 -0.39 0.07 16 33 H 0.09 1.27 5.22 -51.93 -0.27 1.00 16 34 H 0.12 1.88 4.77 -51.93 -0.25 1.63 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.14 5.76 -51.93 -0.30 0.84 16 38 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 39 H 0.39 9.22 6.18 -40.82 -0.25 8.97 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.08 1.53 6.98 -51.93 -0.36 1.17 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.17 2.89 7.71 -52.49 -0.40 2.49 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -33.96 346.21 -6.80 -40.77 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -5.19 Total: 12.87 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -1.45 Total: 7.05 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.12 Total: -56.44 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.48 Total: -25.39 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.96 -6.80 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999125140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.944 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds