Wall clock time and date at job start Tue Mar 31 2020 13:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36012 * 116.99687 * 2 1 4 4 C 1.35847 * 120.31990 * 359.97438 * 3 2 1 5 5 N 1.35436 * 120.78111 * 179.97438 * 4 3 2 6 6 H 0.97000 * 119.29953 * 179.97438 * 5 4 3 7 7 C 1.36432 * 121.40440 * 359.96196 * 5 4 3 8 8 C 1.48070 * 119.71421 * 180.02562 * 7 5 4 9 9 O 1.21521 * 120.00080 * 199.89609 * 8 7 5 10 10 N 1.34772 * 120.00480 * 19.89292 * 8 7 5 11 11 C 1.46499 * 119.99856 * 5.46679 * 10 8 7 12 12 C 1.46505 * 120.00426 * 185.46813 * 10 8 7 13 13 C 1.53784 * 113.69202 * 199.52719 * 12 10 8 14 14 C 1.53776 * 87.07905 * 89.12496 * 13 12 10 15 15 N 1.46505 * 113.61673 * 270.88358 * 14 13 12 16 16 C 1.36937 * 119.99614 * 257.24292 * 15 14 13 17 17 H 1.07994 * 120.00535 * 0.02562 * 16 15 14 18 18 C 1.38820 * 119.99562 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99962 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99705 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47185 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47061 * 120.00414 * 20 18 16 23 23 H 1.48500 * 109.46738 * 239.99958 * 20 18 16 24 24 C 1.53779 * 87.08384 * 25.43396 * 14 13 12 25 25 C 1.36175 * 120.56582 * 0.28951 * 7 5 4 26 26 C 1.41581 * 120.30806 * 179.97438 * 3 2 1 27 27 O 1.22265 * 120.65448 * 0.02562 * 26 3 2 28 28 H 1.09001 * 109.47243 * 60.00038 * 1 2 3 29 29 H 1.08998 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47524 * 300.00176 * 1 2 3 31 31 H 1.08008 * 119.61085 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.47617 * 264.22463 * 11 10 8 33 33 H 1.09007 * 109.47260 * 24.22506 * 11 10 8 34 34 H 1.09003 * 109.47132 * 144.22413 * 11 10 8 35 35 H 1.09002 * 112.84820 * 68.25612 * 12 10 8 36 36 H 1.08996 * 113.60965 * 203.67657 * 13 12 10 37 37 H 1.09000 * 113.60991 * 334.57748 * 13 12 10 38 38 H 1.09001 * 113.68898 * 139.99365 * 14 13 12 39 39 H 0.96993 * 120.00118 * 77.24469 * 15 14 13 40 40 H 0.96994 * 119.99436 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.61063 * 220.01825 * 24 14 13 42 42 H 1.08997 * 113.61467 * 89.11551 * 24 14 13 43 43 H 1.07997 * 120.40871 * 179.72731 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9180 3.5670 0.0000 6 1 1.3732 4.3696 -0.0008 7 6 3.2774 3.6828 0.0018 8 6 3.8995 5.0264 0.0029 9 8 5.0533 5.1621 -0.3537 10 7 3.1863 6.0991 0.3993 11 6 1.8371 5.9217 0.9418 12 6 3.7601 7.4424 0.2876 13 6 3.0704 8.4854 1.1829 14 6 4.0728 8.0907 2.2802 15 7 3.6127 6.9862 3.1257 16 6 3.1278 7.2407 4.3807 17 1 3.0841 8.2556 4.7472 18 6 2.6914 6.1942 5.1816 19 7 2.7442 4.9573 4.7348 20 14 2.0292 6.5415 6.8935 21 1 2.0748 8.0026 7.1549 22 1 0.6255 6.0660 6.9871 23 1 2.8603 5.8320 7.8990 24 6 5.0168 7.6491 1.1495 25 6 4.0669 2.5733 -0.0027 26 6 3.4599 1.2937 0.0005 27 8 4.1430 0.2797 0.0006 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2344 2.2974 -0.0014 32 1 1.1041 6.0684 0.1485 33 1 1.7376 4.9145 1.3466 34 1 1.6654 6.6503 1.7342 35 1 3.8815 7.7662 -0.7461 36 1 3.1894 9.5100 0.8307 37 1 2.0371 8.2374 1.4256 38 1 4.4473 8.9369 2.8562 39 1 3.6516 6.0746 2.7964 40 1 2.4396 4.2261 5.2945 41 1 5.5548 6.7260 1.3654 42 1 5.6679 8.4451 0.7884 43 1 5.1427 2.6679 -0.0057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999125140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:54 Heat of formation + Delta-G solvation = -8.087800 kcal Electronic energy + Delta-G solvation = -28281.762953 eV Core-core repulsion = 24330.496125 eV Total energy + Delta-G solvation = -3951.266828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.81590 -41.39409 -39.68100 -38.88479 -38.81744 -35.99054 -35.02145 -32.77325 -32.08785 -31.51168 -28.61790 -28.42668 -26.80141 -26.20364 -25.50249 -24.28957 -23.83884 -22.01284 -20.37363 -19.57597 -19.42878 -18.87405 -18.34878 -17.53537 -17.32739 -17.22580 -16.76018 -16.65637 -16.36817 -15.87740 -15.56755 -15.49420 -15.17725 -15.06512 -14.85472 -14.62144 -14.31884 -14.18440 -13.84815 -13.55967 -13.29608 -13.06514 -12.78842 -12.61587 -12.52594 -12.34499 -12.23649 -12.10066 -11.76285 -11.67622 -11.46696 -11.04996 -10.82735 -10.68990 -10.51490 -9.70055 -8.96337 -8.75858 -7.92272 -5.20048 -0.47203 0.13277 1.42848 1.47306 1.48986 1.51843 1.58668 1.89253 2.30716 2.56431 2.56785 2.99838 3.40270 3.50166 3.60971 3.69441 3.77544 3.84738 3.92896 4.04319 4.26875 4.30494 4.33994 4.41909 4.43044 4.47050 4.58818 4.80377 4.81748 4.90185 4.91987 4.99955 5.06355 5.13528 5.31320 5.37999 5.42029 5.54034 5.67370 5.78037 6.09024 6.26645 6.29395 6.76673 6.90047 7.37150 8.12529 8.36861 9.29246 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011077 B = 0.004813 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.142818 B = 5816.135556 C = 7316.989369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.322 6.322 3 C -0.060 4.060 4 C 0.065 3.935 5 N -0.539 5.539 6 H 0.444 0.556 7 C 0.148 3.852 8 C 0.555 3.445 9 O -0.539 6.539 10 N -0.572 5.572 11 C 0.029 3.971 12 C 0.126 3.874 13 C -0.153 4.153 14 C 0.140 3.860 15 N -0.717 5.717 16 C -0.236 4.236 17 H 0.077 0.923 18 C -0.063 4.063 19 N -0.959 5.959 20 Si 0.962 3.038 21 H -0.268 1.268 22 H -0.291 1.291 23 H -0.307 1.307 24 C -0.161 4.161 25 C -0.241 4.241 26 C 0.380 3.620 27 O -0.571 6.571 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.227 0.773 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.376 0.624 40 H 0.248 0.752 41 H 0.039 0.961 42 H 0.114 0.886 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.946 4.338 -13.412 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.236 6.236 3 C -0.110 4.110 4 C -0.064 4.064 5 N -0.160 5.160 6 H 0.296 0.704 7 C 0.033 3.967 8 C 0.341 3.659 9 O -0.416 6.416 10 N -0.304 5.304 11 C -0.113 4.113 12 C 0.024 3.976 13 C -0.194 4.194 14 C 0.029 3.971 15 N -0.356 5.356 16 C -0.368 4.368 17 H 0.094 0.906 18 C -0.257 4.257 19 N -0.609 5.609 20 Si 0.793 3.207 21 H -0.193 1.193 22 H -0.218 1.218 23 H -0.235 1.235 24 C -0.200 4.200 25 C -0.268 4.268 26 C 0.276 3.724 27 O -0.462 6.462 28 H 0.100 0.900 29 H 0.132 0.868 30 H 0.089 0.911 31 H 0.243 0.757 32 H 0.130 0.870 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.209 0.791 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.132 0.868 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.023 3.856 -13.420 17.790 hybrid contribution -0.138 -0.358 1.336 1.390 sum -11.161 3.499 -12.084 16.817 Atomic orbital electron populations 1.23521 0.76301 1.06120 1.02972 1.86218 1.23396 1.24410 1.89543 1.20109 0.93561 0.86358 1.10983 1.22378 1.00787 0.82729 1.00475 1.42264 1.04327 1.10417 1.59028 0.70438 1.20083 0.84325 0.94568 0.97756 1.18040 0.85778 0.83225 0.78871 1.90801 1.16785 1.84826 1.49142 1.47506 1.16964 1.05809 1.60079 1.22763 0.81993 1.05139 1.01416 1.22046 0.95201 0.80950 0.99410 1.24035 1.00500 0.98619 0.96217 1.21532 0.94061 0.91049 0.90416 1.42405 1.74444 1.04836 1.13931 1.19620 1.32037 0.93140 0.92019 0.90553 1.25351 1.03553 0.95253 1.01500 1.69791 1.54770 0.98534 1.37833 0.85243 0.77154 0.77472 0.80828 1.19264 1.21836 1.23526 1.23742 0.97123 1.01568 0.97602 1.22204 1.01709 0.91225 1.11699 1.17216 0.88081 0.89262 0.77826 1.90774 1.67251 1.39007 1.49187 0.90018 0.86772 0.91054 0.75726 0.87028 0.90216 0.88241 0.87720 0.86134 0.90078 0.92216 0.79093 0.94335 0.94237 0.86766 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -9.32 10.33 -78.55 -0.81 -10.13 16 3 C -0.06 -1.80 6.71 22.54 0.15 -1.65 16 4 C 0.07 1.25 10.22 83.58 0.85 2.11 16 5 N -0.54 -11.07 3.97 -184.21 -0.73 -11.81 16 6 H 0.44 6.13 4.46 -92.71 -0.41 5.72 16 7 C 0.15 4.47 6.28 40.56 0.25 4.73 16 8 C 0.56 17.98 7.34 86.85 0.64 18.61 16 9 O -0.54 -20.86 15.14 -3.78 -0.06 -20.92 16 10 N -0.57 -15.49 2.08 -822.78 -1.71 -17.20 16 11 C 0.03 0.64 7.16 127.77 0.91 1.55 16 12 C 0.13 3.22 4.18 45.52 0.19 3.41 16 13 C -0.15 -3.67 7.16 31.12 0.22 -3.44 16 14 C 0.14 4.73 4.55 45.51 0.21 4.94 16 15 N -0.72 -31.62 3.89 -320.44 -1.25 -32.86 16 16 C -0.24 -11.70 9.98 84.04 0.84 -10.86 16 17 H 0.08 3.66 7.83 -2.91 -0.02 3.64 16 18 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 19 N -0.96 -53.51 13.06 21.65 0.28 -53.22 16 20 Si 0.96 42.97 29.55 68.60 2.03 45.00 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.31 -14.42 7.11 99.48 0.71 -13.72 16 24 C -0.16 -4.99 7.09 31.12 0.22 -4.77 16 25 C -0.24 -8.90 9.52 22.63 0.22 -8.69 16 26 C 0.38 15.05 6.78 23.93 0.16 15.21 16 27 O -0.57 -27.71 17.71 8.95 0.16 -27.55 16 28 H 0.08 0.67 7.66 -2.39 -0.02 0.65 16 29 H 0.11 1.29 8.14 -2.39 -0.02 1.28 16 30 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 31 H 0.23 1.71 6.21 -2.91 -0.02 1.69 16 32 H 0.11 1.22 7.43 -2.39 -0.02 1.20 16 33 H 0.08 1.97 5.22 -2.38 -0.01 1.96 16 34 H 0.10 2.79 4.77 -2.39 -0.01 2.78 16 35 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 1.98 5.76 -2.39 -0.01 1.97 16 38 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 39 H 0.38 18.01 6.18 -92.71 -0.57 17.44 16 40 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 41 H 0.04 1.55 6.98 -2.39 -0.02 1.53 16 42 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 43 H 0.14 5.75 7.71 -2.91 -0.02 5.72 16 Total: -1.00 -81.59 346.21 4.45 -77.14 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.09 Total: 32.07 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 6.45 Total: 19.49 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -3.41 Total: -115.09 kcal Atomic # 8 Polarization: -57.88 SS G_CDS: -0.71 Total: -58.59 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -81.59 4.45 -77.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999125140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.053 kcal (2) G-P(sol) polarization free energy of solvation -81.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds