Wall clock time and date at job start Tue Mar 31 2020 13:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 119.99620 * 2 1 4 4 O 1.21617 * 119.99491 * 180.86481 * 3 2 1 5 5 C 1.47377 * 120.00395 * 0.86740 * 3 2 1 6 6 C 1.47018 * 127.19038 * 349.68297 * 5 3 2 7 7 C 1.34176 * 105.95319 * 180.15785 * 6 5 3 8 8 O 1.34218 * 109.12601 * 359.59988 * 7 6 5 9 9 C 1.33651 * 110.90304 * 0.27252 * 8 7 6 10 10 C 1.50703 * 125.79888 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.46925 * 270.02054 * 10 9 8 12 12 N 1.34775 * 119.99987 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00000 * 0.02562 * 11 10 9 14 14 C 1.46491 * 120.00095 * 179.97438 * 2 1 3 15 15 C 1.53784 * 113.61379 * 39.13977 * 14 2 1 16 16 C 1.53956 * 87.01948 * 220.04612 * 15 14 2 17 17 N 1.46499 * 113.54181 * 270.80937 * 16 15 14 18 18 C 1.36935 * 120.00333 * 252.50094 * 17 16 15 19 19 H 1.07995 * 119.99756 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00292 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00231 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00082 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47291 * 89.99416 * 22 20 18 24 24 H 1.48500 * 109.47399 * 210.00152 * 22 20 18 25 25 H 1.48502 * 109.46795 * 330.00053 * 22 20 18 26 26 C 1.53783 * 113.61604 * 301.53223 * 14 2 1 27 27 H 1.08999 * 109.46785 * 83.31880 * 1 2 3 28 28 H 1.08991 * 109.46849 * 203.32112 * 1 2 3 29 29 H 1.09006 * 109.46977 * 323.31996 * 1 2 3 30 30 H 1.08002 * 127.02628 * 0.02620 * 6 5 3 31 31 H 1.08003 * 125.43824 * 179.87390 * 7 6 5 32 32 H 1.09001 * 109.47361 * 30.02028 * 10 9 8 33 33 H 1.09004 * 109.47270 * 150.02266 * 10 9 8 34 34 H 0.97000 * 119.99929 * 0.02562 * 12 11 10 35 35 H 0.97004 * 120.00102 * 179.97438 * 12 11 10 36 36 H 1.08997 * 112.85230 * 170.33426 * 14 2 1 37 37 H 1.09003 * 113.61211 * 334.56269 * 15 14 2 38 38 H 1.08999 * 113.61541 * 105.47211 * 15 14 2 39 39 H 1.09002 * 113.74317 * 139.93904 * 16 15 14 40 40 H 0.97005 * 119.99605 * 72.48971 * 17 16 15 41 41 H 0.96999 * 119.99947 * 179.97438 * 21 20 18 42 42 H 1.08996 * 113.61160 * 254.52691 * 26 14 2 43 43 H 1.08993 * 113.61222 * 25.43048 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3549 1.1673 -0.0159 5 6 1.4021 2.4435 0.0193 6 6 -0.0427 2.6385 -0.1700 7 6 -0.2522 3.9603 -0.0737 8 8 0.9174 4.5749 0.1624 9 6 1.9174 3.6902 0.2218 10 6 3.3680 4.0149 0.4700 11 6 4.0591 4.2645 -0.8458 12 7 5.3704 4.5749 -0.8701 13 8 3.4350 4.1868 -1.8829 14 6 2.1975 -1.2686 0.0006 15 6 1.5591 -2.3490 -0.8884 16 6 1.9075 -3.3556 0.2232 17 7 3.2378 -3.9513 0.0772 18 6 3.3640 -5.2576 -0.3137 19 1 2.4827 -5.8488 -0.5140 20 6 4.6245 -5.8220 -0.4526 21 7 4.7457 -7.0777 -0.8278 22 14 6.1490 -4.7992 -0.1070 23 1 6.5198 -4.9317 1.3249 24 1 7.2697 -5.2788 -0.9551 25 1 5.8692 -3.3739 -0.4159 26 6 1.8674 -2.1701 1.2020 27 1 -0.3633 0.1196 -1.0207 28 1 -0.3633 -0.9436 0.4068 29 1 -0.3633 0.8242 0.6139 30 1 -0.7838 1.8742 -0.3519 31 1 -1.2098 4.4510 -0.1666 32 1 3.4394 4.9066 1.0928 33 1 3.8460 3.1774 0.9783 34 1 5.8694 4.6374 -0.0406 35 1 5.8153 4.7352 -1.7170 36 1 3.2667 -1.1402 -0.1681 37 1 0.4874 -2.2155 -1.0363 38 1 2.0977 -2.5223 -1.8200 39 1 1.1291 -4.0971 0.4035 40 1 4.0294 -3.4203 0.2572 41 1 5.6266 -7.4719 -0.9252 42 1 2.6546 -2.1991 1.9553 43 1 0.8803 -1.9875 1.6265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999306456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:51 Heat of formation + Delta-G solvation = 2.562837 kcal Electronic energy + Delta-G solvation = -27248.397879 eV Core-core repulsion = 23297.592897 eV Total energy + Delta-G solvation = -3950.804982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.85340 -40.02510 -39.53022 -38.03113 -35.10167 -33.94693 -33.45641 -32.72064 -32.09969 -30.36325 -27.95106 -27.23686 -25.26112 -24.99766 -23.29396 -22.11579 -21.76210 -20.97149 -19.21208 -18.48322 -17.87696 -17.72203 -17.37425 -17.13097 -16.45799 -16.09432 -15.95942 -15.36134 -15.17383 -14.79493 -14.62257 -14.17655 -13.93350 -13.57805 -13.46223 -13.29577 -12.97688 -12.90262 -12.66783 -12.15655 -12.10389 -12.00426 -11.93512 -11.51589 -10.93557 -10.74737 -10.35234 -10.31933 -10.29724 -9.97291 -9.93662 -9.86851 -9.68595 -9.57712 -8.93103 -8.90052 -8.41061 -7.31307 -5.79440 -3.16032 1.14834 1.86603 2.40270 2.50472 3.08332 3.19794 3.39106 3.44082 3.44357 3.46630 4.13837 4.48571 4.58345 4.60619 4.67575 4.78987 4.95404 5.03896 5.06699 5.07653 5.21604 5.23855 5.34872 5.38496 5.49396 5.59098 5.70743 5.74209 5.76857 6.01214 6.04591 6.12118 6.30222 6.46717 6.51083 6.58679 6.68486 6.77854 6.91531 7.02446 7.49764 7.97273 8.00344 8.23978 8.39976 9.17389 9.89961 10.08562 11.38437 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.003319 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.102135 B = 8434.168954 C = 9816.359354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.592 5.592 3 C 0.585 3.415 4 O -0.544 6.544 5 C -0.216 4.216 6 C -0.204 4.204 7 C -0.033 4.033 8 O -0.172 6.172 9 C 0.084 3.916 10 C -0.068 4.068 11 C 0.530 3.470 12 N -0.853 5.853 13 O -0.533 6.533 14 C 0.122 3.878 15 C -0.181 4.181 16 C 0.178 3.822 17 N -0.730 5.730 18 C -0.249 4.249 19 H 0.093 0.907 20 C 0.008 3.992 21 N -0.931 5.931 22 Si 0.881 3.119 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.275 1.275 26 C -0.169 4.169 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.175 0.825 31 H 0.209 0.791 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.402 0.598 35 H 0.404 0.596 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.363 0.637 41 H 0.260 0.740 42 H 0.070 0.930 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.071 26.987 5.606 29.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.322 5.322 3 C 0.375 3.625 4 O -0.424 6.424 5 C -0.221 4.221 6 C -0.222 4.222 7 C -0.100 4.100 8 O -0.067 6.067 9 C 0.031 3.969 10 C -0.108 4.108 11 C 0.314 3.686 12 N -0.417 5.417 13 O -0.408 6.408 14 C 0.020 3.980 15 C -0.223 4.223 16 C 0.065 3.935 17 N -0.370 5.370 18 C -0.378 4.378 19 H 0.111 0.889 20 C -0.188 4.188 21 N -0.578 5.578 22 Si 0.711 3.289 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.201 1.201 26 C -0.209 4.209 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.192 0.808 31 H 0.225 0.775 32 H 0.131 0.869 33 H 0.158 0.842 34 H 0.231 0.769 35 H 0.235 0.765 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.197 0.803 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.993 26.892 4.987 28.791 hybrid contribution 1.348 0.580 0.107 1.471 sum -7.645 27.472 5.093 28.967 Atomic orbital electron populations 1.22403 0.80285 1.03779 1.01726 1.47662 1.06725 1.05719 1.72141 1.17276 0.86464 0.82643 0.76123 1.90739 1.13241 1.87264 1.51146 1.21139 0.94101 0.93760 1.13083 1.23579 0.94981 0.96889 1.06775 1.23942 0.88114 0.92508 1.05389 1.83704 1.15548 1.37798 1.69694 1.21606 0.89097 0.86491 0.99712 1.20269 0.86831 1.06340 0.97342 1.20100 0.82401 0.75405 0.90654 1.43704 1.10564 1.74482 1.12957 1.90789 1.65181 1.50244 1.34626 1.22794 0.97710 0.79704 0.97802 1.24314 0.99982 0.97255 1.00703 1.20891 0.89133 0.91485 0.91945 1.42561 1.01225 1.11390 1.81797 1.19092 0.94423 0.85835 1.38469 0.88945 1.24661 0.97094 0.95878 1.01174 1.69695 1.22908 1.12015 1.53231 0.86601 0.84149 0.80118 0.78069 1.20925 1.21587 1.20109 1.23984 1.01747 0.97508 0.97640 0.92399 0.90416 0.89779 0.80845 0.77485 0.86869 0.84240 0.76938 0.76473 0.86688 0.90543 0.90748 0.90464 0.80349 0.92960 0.91156 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 7.46 59.85 0.45 1.06 16 2 N -0.59 -8.52 3.08 -174.29 -0.54 -9.05 16 3 C 0.59 9.32 7.66 -12.54 -0.10 9.22 16 4 O -0.54 -10.13 14.50 5.26 0.08 -10.06 16 5 C -0.22 -2.88 6.08 -103.28 -0.63 -3.51 16 6 C -0.20 -2.00 8.87 -37.46 -0.33 -2.33 16 7 C -0.03 -0.28 12.03 29.30 0.35 0.07 16 8 O -0.17 -1.88 10.52 7.65 0.08 -1.80 16 9 C 0.08 1.03 5.87 -34.97 -0.21 0.83 16 10 C -0.07 -0.67 5.61 -29.03 -0.16 -0.83 16 11 C 0.53 6.31 8.09 -10.98 -0.09 6.23 16 12 N -0.85 -6.45 8.87 31.22 0.28 -6.17 16 13 O -0.53 -8.97 16.87 5.55 0.09 -8.87 16 14 C 0.12 2.03 4.09 -67.12 -0.27 1.76 16 15 C -0.18 -3.04 7.30 -25.83 -0.19 -3.23 16 16 C 0.18 3.36 4.57 -67.03 -0.31 3.05 16 17 N -0.73 -17.36 5.11 -52.55 -0.27 -17.63 16 18 C -0.25 -7.01 10.45 -15.06 -0.16 -7.16 16 19 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 20 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -29.31 13.97 55.49 0.78 -28.54 16 22 Si 0.88 22.48 27.73 -169.99 -4.71 17.76 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 26 C -0.17 -2.65 7.34 -25.92 -0.19 -2.84 16 27 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 28 H 0.08 0.71 6.08 -51.93 -0.32 0.39 16 29 H 0.08 0.69 4.81 -51.93 -0.25 0.44 16 30 H 0.17 1.26 4.90 -52.49 -0.26 1.00 16 31 H 0.21 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.14 1.39 6.75 -51.93 -0.35 1.04 16 34 H 0.40 1.64 8.83 -40.82 -0.36 1.28 16 35 H 0.40 2.79 8.93 -40.82 -0.36 2.42 16 36 H 0.12 2.25 7.21 -51.93 -0.37 1.88 16 37 H 0.08 1.07 6.66 -51.93 -0.35 0.73 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 40 H 0.36 8.67 5.76 -40.82 -0.24 8.44 16 41 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.07 6.92 -51.93 -0.36 0.71 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -38.96 353.80 -6.13 -45.09 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -5.31 Total: 11.49 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -1.93 Total: 2.44 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.25 Total: -61.39 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.25 Total: -20.73 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -38.96 -6.13 -45.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999306456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.654 kcal (2) G-P(sol) polarization free energy of solvation -38.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds