Wall clock time and date at job start Tue Mar 31 2020 13:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34780 * 119.99620 * 2 1 4 4 O 1.21617 * 119.99491 * 180.86481 * 3 2 1 5 5 C 1.47377 * 120.00395 * 0.86740 * 3 2 1 6 6 C 1.47018 * 127.19038 * 349.68297 * 5 3 2 7 7 C 1.34176 * 105.95319 * 180.15785 * 6 5 3 8 8 O 1.34218 * 109.12601 * 359.59988 * 7 6 5 9 9 C 1.33651 * 110.90304 * 0.27252 * 8 7 6 10 10 C 1.50703 * 125.79888 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.46925 * 270.02054 * 10 9 8 12 12 N 1.34775 * 119.99987 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00000 * 0.02562 * 11 10 9 14 14 C 1.46491 * 120.00095 * 179.97438 * 2 1 3 15 15 C 1.53784 * 113.61379 * 39.13977 * 14 2 1 16 16 C 1.53956 * 87.01948 * 220.04612 * 15 14 2 17 17 N 1.46499 * 113.54181 * 270.80937 * 16 15 14 18 18 C 1.36935 * 120.00333 * 252.50094 * 17 16 15 19 19 H 1.07995 * 119.99756 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00292 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00231 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00082 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47291 * 89.99416 * 22 20 18 24 24 H 1.48500 * 109.47399 * 210.00152 * 22 20 18 25 25 H 1.48502 * 109.46795 * 330.00053 * 22 20 18 26 26 C 1.53783 * 113.61604 * 301.53223 * 14 2 1 27 27 H 1.08999 * 109.46785 * 83.31880 * 1 2 3 28 28 H 1.08991 * 109.46849 * 203.32112 * 1 2 3 29 29 H 1.09006 * 109.46977 * 323.31996 * 1 2 3 30 30 H 1.08002 * 127.02628 * 0.02620 * 6 5 3 31 31 H 1.08003 * 125.43824 * 179.87390 * 7 6 5 32 32 H 1.09001 * 109.47361 * 30.02028 * 10 9 8 33 33 H 1.09004 * 109.47270 * 150.02266 * 10 9 8 34 34 H 0.97000 * 119.99929 * 0.02562 * 12 11 10 35 35 H 0.97004 * 120.00102 * 179.97438 * 12 11 10 36 36 H 1.08997 * 112.85230 * 170.33426 * 14 2 1 37 37 H 1.09003 * 113.61211 * 334.56269 * 15 14 2 38 38 H 1.08999 * 113.61541 * 105.47211 * 15 14 2 39 39 H 1.09002 * 113.74317 * 139.93904 * 16 15 14 40 40 H 0.97005 * 119.99605 * 72.48971 * 17 16 15 41 41 H 0.96999 * 119.99947 * 179.97438 * 21 20 18 42 42 H 1.08996 * 113.61160 * 254.52691 * 26 14 2 43 43 H 1.08993 * 113.61222 * 25.43048 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3549 1.1673 -0.0159 5 6 1.4021 2.4435 0.0193 6 6 -0.0427 2.6385 -0.1700 7 6 -0.2522 3.9603 -0.0737 8 8 0.9174 4.5749 0.1624 9 6 1.9174 3.6902 0.2218 10 6 3.3680 4.0149 0.4700 11 6 4.0591 4.2645 -0.8458 12 7 5.3704 4.5749 -0.8701 13 8 3.4350 4.1868 -1.8829 14 6 2.1975 -1.2686 0.0006 15 6 1.5591 -2.3490 -0.8884 16 6 1.9075 -3.3556 0.2232 17 7 3.2378 -3.9513 0.0772 18 6 3.3640 -5.2576 -0.3137 19 1 2.4827 -5.8488 -0.5140 20 6 4.6245 -5.8220 -0.4526 21 7 4.7457 -7.0777 -0.8278 22 14 6.1490 -4.7992 -0.1070 23 1 6.5198 -4.9317 1.3249 24 1 7.2697 -5.2788 -0.9551 25 1 5.8692 -3.3739 -0.4159 26 6 1.8674 -2.1701 1.2020 27 1 -0.3633 0.1196 -1.0207 28 1 -0.3633 -0.9436 0.4068 29 1 -0.3633 0.8242 0.6139 30 1 -0.7838 1.8742 -0.3519 31 1 -1.2098 4.4510 -0.1666 32 1 3.4394 4.9066 1.0928 33 1 3.8460 3.1774 0.9783 34 1 5.8694 4.6374 -0.0406 35 1 5.8153 4.7352 -1.7170 36 1 3.2667 -1.1402 -0.1681 37 1 0.4874 -2.2155 -1.0363 38 1 2.0977 -2.5223 -1.8200 39 1 1.1291 -4.0971 0.4035 40 1 4.0294 -3.4203 0.2572 41 1 5.6266 -7.4719 -0.9252 42 1 2.6546 -2.1991 1.9553 43 1 0.8803 -1.9875 1.6265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999306456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:51 Heat of formation + Delta-G solvation = -29.288165 kcal Electronic energy + Delta-G solvation = -27249.779042 eV Core-core repulsion = 23297.592897 eV Total energy + Delta-G solvation = -3952.186145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.62940 -41.24939 -40.44574 -39.37562 -36.41979 -35.05517 -34.80336 -33.84498 -32.96711 -32.29067 -28.76887 -28.16218 -26.66753 -26.39289 -24.95457 -23.26736 -22.67807 -21.92080 -20.31898 -19.85111 -19.58540 -18.69105 -18.29762 -18.02598 -17.64126 -16.95999 -16.85844 -16.61104 -16.28410 -16.17365 -16.06768 -15.45858 -14.84857 -14.78704 -14.74660 -14.49491 -14.22230 -14.13844 -13.84538 -13.68982 -13.50243 -13.38933 -12.88933 -12.75983 -12.43387 -12.25540 -12.20450 -11.86350 -11.79798 -11.30050 -11.28693 -11.01780 -10.91722 -10.74165 -10.72585 -9.78316 -9.44631 -9.34515 -8.06230 -5.39451 0.24327 1.15071 1.34799 1.36370 1.42967 1.53862 1.74369 2.04317 2.20554 2.43885 2.66701 3.23745 3.42559 3.44473 3.57302 3.72646 3.79214 3.90781 3.98557 4.14862 4.18463 4.20149 4.26865 4.34154 4.59126 4.62491 4.70957 4.73016 4.78775 4.88279 4.96611 5.02787 5.05535 5.18180 5.26405 5.38997 5.63328 5.76617 5.81043 6.01943 6.19487 6.35803 6.41260 7.03398 7.10776 7.25296 7.80472 7.96946 9.14999 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.003319 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.102135 B = 8434.168954 C = 9816.359354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.590 5.590 3 C 0.574 3.426 4 O -0.586 6.586 5 C -0.246 4.246 6 C -0.213 4.213 7 C -0.023 4.023 8 O -0.177 6.177 9 C 0.072 3.928 10 C -0.068 4.068 11 C 0.523 3.477 12 N -0.833 5.833 13 O -0.592 6.592 14 C 0.125 3.875 15 C -0.166 4.166 16 C 0.157 3.843 17 N -0.738 5.738 18 C -0.230 4.230 19 H 0.067 0.933 20 C -0.058 4.058 21 N -0.980 5.980 22 Si 0.946 3.054 23 H -0.274 1.274 24 H -0.294 1.294 25 H -0.265 1.265 26 C -0.144 4.144 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.199 0.801 31 H 0.254 0.746 32 H 0.155 0.845 33 H 0.135 0.865 34 H 0.421 0.579 35 H 0.409 0.591 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.362 0.638 41 H 0.258 0.742 42 H 0.061 0.939 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.981 29.785 6.973 32.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.320 5.320 3 C 0.366 3.634 4 O -0.468 6.468 5 C -0.251 4.251 6 C -0.231 4.231 7 C -0.088 4.088 8 O -0.073 6.073 9 C 0.018 3.982 10 C -0.107 4.107 11 C 0.308 3.692 12 N -0.397 5.397 13 O -0.472 6.472 14 C 0.021 3.979 15 C -0.207 4.207 16 C 0.047 3.953 17 N -0.379 5.379 18 C -0.361 4.361 19 H 0.085 0.915 20 C -0.250 4.250 21 N -0.630 5.630 22 Si 0.774 3.226 23 H -0.200 1.200 24 H -0.220 1.220 25 H -0.191 1.191 26 C -0.184 4.184 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.125 0.875 30 H 0.216 0.784 31 H 0.270 0.730 32 H 0.172 0.828 33 H 0.153 0.847 34 H 0.252 0.748 35 H 0.240 0.760 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.195 0.805 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.934 29.751 6.404 32.337 hybrid contribution 1.817 -0.228 -0.333 1.862 sum -9.116 29.523 6.070 31.489 Atomic orbital electron populations 1.22756 0.77381 1.05671 1.03226 1.47691 1.08417 1.04358 1.71546 1.17773 0.86293 0.83848 0.75518 1.90700 1.15089 1.87955 1.53099 1.21174 0.96054 0.92850 1.14979 1.23859 0.93626 0.98261 1.07373 1.24875 0.88629 0.92382 1.02882 1.83728 1.16145 1.37844 1.69556 1.21962 0.90173 0.86605 0.99429 1.20354 0.85690 1.07959 0.96671 1.20530 0.83302 0.74681 0.90640 1.43581 1.09448 1.72447 1.14261 1.90750 1.66675 1.53247 1.36533 1.22431 0.96207 0.81106 0.98151 1.24181 1.01841 0.96168 0.98513 1.21208 0.86925 0.92699 0.94457 1.42590 1.03374 1.09949 1.81988 1.19104 0.93437 0.87298 1.36280 0.91496 1.25387 1.00255 0.97017 1.02326 1.69851 1.23413 1.13963 1.55771 0.85550 0.80139 0.78884 0.78065 1.19982 1.22040 1.19050 1.23837 1.03565 0.94537 0.96462 0.91192 0.88845 0.87510 0.78396 0.73024 0.82773 0.84707 0.74774 0.75990 0.90368 0.86888 0.93652 0.90089 0.80457 0.93256 0.91972 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.83 7.46 127.77 0.95 1.78 16 2 N -0.59 -15.98 3.08 -823.57 -2.54 -18.52 16 3 C 0.57 18.01 7.66 86.65 0.66 18.67 16 4 O -0.59 -22.32 14.50 -4.08 -0.06 -22.38 16 5 C -0.25 -6.22 6.08 -18.99 -0.12 -6.33 16 6 C -0.21 -3.52 8.87 23.65 0.21 -3.31 16 7 C -0.02 -0.30 12.03 66.89 0.80 0.50 16 8 O -0.18 -3.46 10.52 4.46 0.05 -3.42 16 9 C 0.07 1.68 5.87 25.26 0.15 1.83 16 10 C -0.07 -1.26 5.61 29.10 0.16 -1.10 16 11 C 0.52 12.32 8.09 87.66 0.71 13.03 16 12 N -0.83 -11.90 8.87 -173.53 -1.54 -13.44 16 13 O -0.59 -20.30 16.87 -3.04 -0.05 -20.35 16 14 C 0.12 4.02 4.09 45.52 0.19 4.21 16 15 C -0.17 -5.37 7.30 31.18 0.23 -5.14 16 16 C 0.16 5.76 4.57 45.58 0.21 5.97 16 17 N -0.74 -35.19 5.11 -320.17 -1.64 -36.83 16 18 C -0.23 -13.22 10.45 84.03 0.88 -12.34 16 19 H 0.07 4.11 8.06 -2.91 -0.02 4.09 16 20 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 21 N -0.98 -63.39 13.97 21.65 0.30 -63.09 16 22 Si 0.95 47.39 27.73 68.60 1.90 49.29 16 23 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 25 H -0.27 -12.67 6.52 99.48 0.65 -12.02 16 26 C -0.14 -4.22 7.34 31.12 0.23 -3.99 16 27 H 0.07 1.01 7.68 -2.39 -0.02 1.00 16 28 H 0.09 1.24 6.08 -2.39 -0.01 1.23 16 29 H 0.11 1.31 4.81 -2.38 -0.01 1.30 16 30 H 0.20 2.03 4.90 -2.91 -0.01 2.02 16 31 H 0.25 0.72 8.06 -2.91 -0.02 0.70 16 32 H 0.15 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.14 2.66 6.75 -2.39 -0.02 2.64 16 34 H 0.42 2.80 8.83 -92.71 -0.82 1.98 16 35 H 0.41 5.39 8.93 -92.71 -0.83 4.56 16 36 H 0.08 3.14 7.21 -2.39 -0.02 3.12 16 37 H 0.11 2.81 6.66 -2.39 -0.02 2.80 16 38 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 40 H 0.36 17.29 5.76 -92.70 -0.53 16.75 16 41 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.12 2.63 6.92 -2.39 -0.02 2.61 16 Total: -1.00 -89.71 353.80 1.02 -88.69 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -1.14 Total: 29.27 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.73 Total: 10.76 kcal Atomic # 7 Polarization: -126.46 SS G_CDS: -5.41 Total: -131.87 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -0.06 Total: -46.14 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.90 Total: 49.29 kcal Total: -89.71 1.02 -88.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999306456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.406 kcal (2) G-P(sol) polarization free energy of solvation -89.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds