Wall clock time and date at job start Tue Mar 31 2020 13:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35502 * 117.00004 * 2 1 4 4 C 1.39210 * 120.89695 * 0.02562 * 3 2 1 5 5 C 1.37909 * 119.38614 * 179.97438 * 4 3 2 6 6 N 1.32079 * 121.29427 * 359.97438 * 5 4 3 7 7 C 1.32179 * 121.97541 * 359.74895 * 6 5 4 8 8 O 1.35434 * 119.77758 * 180.29203 * 7 6 5 9 9 C 1.40292 * 120.44785 * 0.53451 * 7 6 5 10 10 C 1.47228 * 120.65368 * 179.72358 * 9 7 6 11 11 O 1.21626 * 120.00263 * 269.72898 * 10 9 7 12 12 N 1.34781 * 119.99547 * 89.73058 * 10 9 7 13 13 C 1.46494 * 120.00185 * 359.97438 * 12 10 9 14 14 C 1.46497 * 119.99611 * 180.02562 * 12 10 9 15 15 C 1.53779 * 113.61704 * 63.33615 * 14 12 10 16 16 C 1.53781 * 87.07945 * 89.11365 * 15 14 12 17 17 N 1.46496 * 113.61478 * 270.79713 * 16 15 14 18 18 C 1.36942 * 119.99999 * 202.21982 * 17 16 15 19 19 H 1.07995 * 120.00210 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99801 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99944 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99877 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46909 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47088 * 120.00041 * 22 20 18 25 25 H 1.48496 * 109.46829 * 240.00116 * 22 20 18 26 26 C 1.53780 * 87.17599 * 25.39382 * 16 15 14 27 27 H 1.08996 * 109.46842 * 60.00422 * 1 2 3 28 28 H 1.09001 * 109.46773 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47238 * 300.00162 * 1 2 3 30 30 H 1.07991 * 120.30761 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.34838 * 180.02562 * 5 4 3 32 32 H 0.96699 * 113.99563 * 270.24943 * 8 7 6 33 33 H 1.09003 * 109.47140 * 268.62865 * 13 12 10 34 34 H 1.09001 * 109.47212 * 28.62503 * 13 12 10 35 35 H 1.08994 * 109.47386 * 148.62488 * 13 12 10 36 36 H 1.09006 * 112.91019 * 292.08043 * 14 12 10 37 37 H 1.08994 * 113.61442 * 334.56731 * 15 14 12 38 38 H 1.09001 * 113.61408 * 203.66242 * 15 14 12 39 39 H 1.09009 * 113.61361 * 139.98297 * 16 15 14 40 40 H 0.96998 * 120.00010 * 22.21966 * 17 16 15 41 41 H 0.97000 * 119.99959 * 180.02562 * 21 20 18 42 42 H 1.08995 * 113.61521 * 89.15616 * 26 16 15 43 43 H 1.08993 * 113.61437 * 220.06296 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3044 2.3866 0.0005 5 6 1.9626 3.5984 0.0011 6 7 3.2819 3.6625 0.0016 7 6 4.0354 2.5766 0.0065 8 8 5.3846 2.6942 0.0128 9 6 3.4472 1.3030 0.0002 10 6 4.2822 0.0905 -0.0005 11 8 4.6272 -0.4099 -1.0540 12 7 4.6644 -0.4651 1.1665 13 6 4.2494 0.1379 2.4355 14 6 5.4958 -1.6713 1.1659 15 6 6.8823 -1.4636 0.5340 16 6 7.3734 -1.0612 1.9346 17 7 7.2339 0.3695 2.2169 18 6 8.0078 0.9556 3.1828 19 1 8.7213 0.3631 3.7362 20 6 7.8751 2.3112 3.4506 21 7 7.0059 3.0333 2.7758 22 14 8.9313 3.1108 4.7676 23 1 9.8231 2.0900 5.3742 24 1 9.7537 4.1860 4.1574 25 1 8.0570 3.6919 5.8179 26 6 6.2260 -1.9154 2.4992 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2250 2.3527 0.0014 31 1 1.3880 4.5129 0.0019 32 1 5.7803 2.7311 -0.8688 33 1 5.0049 0.8523 2.7626 34 1 3.2980 0.6520 2.2995 35 1 4.1365 -0.6419 3.1886 36 1 4.9706 -2.5485 0.7878 37 1 6.9145 -0.6498 -0.1904 38 1 7.3339 -2.3825 0.1602 39 1 8.3642 -1.4458 2.1771 40 1 6.5933 0.9017 1.7196 41 1 6.9134 3.9806 2.9626 42 1 6.4979 -2.9580 2.6636 43 1 5.7292 -1.4658 3.3588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999710155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:48 Heat of formation + Delta-G solvation = -8.795654 kcal Electronic energy + Delta-G solvation = -29138.046257 eV Core-core repulsion = 25186.748734 eV Total energy + Delta-G solvation = -3951.297523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00421 -39.66945 -38.66819 -37.40893 -36.36189 -34.04260 -33.07162 -31.57284 -30.35512 -29.73078 -27.68095 -26.69028 -25.13835 -24.61600 -23.72460 -22.69650 -22.40866 -19.99288 -18.94126 -17.97246 -17.50503 -17.37542 -16.99748 -16.45665 -16.20378 -15.80023 -15.18299 -14.91434 -14.80405 -14.53532 -14.40317 -13.75955 -13.58608 -13.24433 -12.90454 -12.85053 -12.56313 -12.29870 -12.03198 -11.71471 -11.65289 -11.60615 -11.30493 -11.22160 -11.15212 -10.81331 -10.67072 -10.15523 -10.04925 -9.85958 -9.59448 -9.45259 -9.09253 -8.93878 -8.81107 -8.75575 -7.98530 -6.84749 -5.62002 -2.94176 0.94135 1.27397 2.86194 2.97159 3.40287 3.47703 3.54417 3.56009 3.65989 4.03064 4.50110 4.65809 4.75516 4.86296 4.89098 4.93594 5.05895 5.19565 5.23815 5.33822 5.54130 5.56041 5.59899 5.67366 5.69566 5.87180 5.93638 6.00292 6.09602 6.24741 6.31249 6.42910 6.54495 6.75170 6.82683 6.84008 6.99157 7.00669 7.22951 7.82111 7.82933 7.87662 8.13492 8.52266 8.59994 9.64154 10.22383 10.60344 11.55279 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.005593 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.770514 B = 5005.315563 C = 6282.246655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.302 6.302 3 C 0.208 3.792 4 C -0.286 4.286 5 C 0.170 3.830 6 N -0.520 5.520 7 C 0.402 3.598 8 O -0.431 6.431 9 C -0.226 4.226 10 C 0.588 3.412 11 O -0.543 6.543 12 N -0.570 5.570 13 C 0.074 3.926 14 C 0.129 3.871 15 C -0.161 4.161 16 C 0.166 3.834 17 N -0.703 5.703 18 C -0.252 4.252 19 H 0.068 0.932 20 C -0.006 4.006 21 N -0.905 5.905 22 Si 0.899 3.101 23 H -0.283 1.283 24 H -0.293 1.293 25 H -0.294 1.294 26 C -0.184 4.184 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.143 0.857 31 H 0.163 0.837 32 H 0.398 0.602 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.394 0.606 41 H 0.253 0.747 42 H 0.079 0.921 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.799 -4.829 -5.431 16.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.213 6.213 3 C 0.154 3.846 4 C -0.307 4.307 5 C 0.013 3.987 6 N -0.242 5.242 7 C 0.222 3.778 8 O -0.237 6.237 9 C -0.234 4.234 10 C 0.374 3.626 11 O -0.421 6.421 12 N -0.301 5.301 13 C -0.069 4.069 14 C 0.025 3.975 15 C -0.201 4.201 16 C 0.053 3.947 17 N -0.345 5.345 18 C -0.383 4.383 19 H 0.086 0.914 20 C -0.204 4.204 21 N -0.551 5.551 22 Si 0.730 3.270 23 H -0.208 1.208 24 H -0.221 1.221 25 H -0.221 1.221 26 C -0.225 4.225 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.161 0.839 31 H 0.180 0.820 32 H 0.257 0.743 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.231 0.769 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.991 -4.476 -5.227 15.591 hybrid contribution -0.386 0.051 0.296 0.489 sum -14.377 -4.425 -4.931 15.830 Atomic orbital electron populations 1.23168 0.77564 1.04437 1.01725 1.86085 1.21987 1.26069 1.87124 1.19043 0.90321 0.84950 0.90334 1.22040 1.01431 0.92744 1.14509 1.22379 0.89074 0.96981 0.90283 1.67398 1.06866 1.32454 1.17503 1.19008 0.85867 0.84952 0.87959 1.85114 1.11700 1.94670 1.32221 1.20372 0.91514 0.95984 1.15515 1.17386 0.79227 0.82329 0.83630 1.90748 1.57020 1.63261 1.31071 1.47310 1.49657 1.27071 1.06024 1.22029 1.00750 0.99260 0.84825 1.21814 0.90610 0.86026 0.99009 1.23721 0.95303 1.01782 0.99290 1.21129 0.95106 0.86583 0.91872 1.42390 1.46285 1.02133 1.43655 1.19236 1.15253 0.91956 1.11838 0.91403 1.24759 0.99493 0.96477 0.99644 1.69721 1.36777 1.06452 1.42152 0.86263 0.79808 0.79356 0.81550 1.20829 1.22057 1.22132 1.24271 1.01160 1.00917 0.96196 0.92196 0.87848 0.92115 0.83918 0.82008 0.74317 0.88052 0.93111 0.91638 0.91258 0.90786 0.89979 0.92195 0.76864 0.93653 0.90251 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.84 101.05 0.99 1.20 16 2 O -0.30 -4.18 10.03 -18.20 -0.18 -4.36 16 3 C 0.21 3.11 6.32 -38.32 -0.24 2.87 16 4 C -0.29 -3.38 9.09 -39.34 -0.36 -3.74 16 5 C 0.17 2.18 11.15 -17.57 -0.20 1.98 16 6 N -0.52 -8.86 10.37 -13.06 -0.14 -8.99 16 7 C 0.40 7.48 7.77 -16.63 -0.13 7.36 16 8 O -0.43 -8.74 13.02 -17.99 -0.23 -8.98 16 9 C -0.23 -4.09 3.92 -104.57 -0.41 -4.50 16 10 C 0.59 11.77 5.97 -12.61 -0.08 11.70 16 11 O -0.54 -12.01 16.07 5.25 0.08 -11.92 16 12 N -0.57 -10.95 2.09 -174.24 -0.36 -11.31 16 13 C 0.07 1.40 8.66 59.84 0.52 1.92 16 14 C 0.13 2.34 4.13 -67.03 -0.28 2.06 16 15 C -0.16 -3.06 7.13 -25.92 -0.18 -3.24 16 16 C 0.17 3.43 4.55 -67.12 -0.31 3.12 16 17 N -0.70 -17.47 4.05 -52.64 -0.21 -17.68 16 18 C -0.25 -6.87 9.98 -15.06 -0.15 -7.02 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 21 N -0.90 -26.13 13.06 55.49 0.72 -25.41 16 22 Si 0.90 22.23 29.55 -169.99 -5.02 17.20 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 C -0.18 -3.23 7.17 -25.82 -0.19 -3.41 16 27 H 0.06 0.39 7.71 -51.93 -0.40 -0.01 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.40 7.70 -51.93 -0.40 0.00 16 30 H 0.14 1.13 6.45 -52.49 -0.34 0.79 16 31 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 32 H 0.40 6.36 9.06 45.56 0.41 6.77 16 33 H 0.10 2.35 6.12 -51.93 -0.32 2.03 16 34 H 0.05 0.90 6.50 -51.93 -0.34 0.56 16 35 H 0.06 1.11 6.56 -51.93 -0.34 0.77 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.60 7.19 -51.93 -0.37 1.23 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.22 8.12 -51.92 -0.42 0.80 16 40 H 0.39 10.20 5.52 -40.82 -0.23 9.97 16 41 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.08 1.44 5.90 -51.93 -0.31 1.13 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -34.55 354.33 -5.81 -40.35 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -4.71 Total: 15.72 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -1.10 Total: 10.04 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.01 Total: -63.39 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.33 Total: -25.26 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.55 -5.81 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999710155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.559 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds