Wall clock time and date at job start Tue Mar 31 2020 13:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35502 * 117.00004 * 2 1 4 4 C 1.39210 * 120.89695 * 0.02562 * 3 2 1 5 5 C 1.37909 * 119.38614 * 179.97438 * 4 3 2 6 6 N 1.32079 * 121.29427 * 359.97438 * 5 4 3 7 7 C 1.32179 * 121.97541 * 359.74895 * 6 5 4 8 8 O 1.35434 * 119.77758 * 180.29203 * 7 6 5 9 9 C 1.40292 * 120.44785 * 0.53451 * 7 6 5 10 10 C 1.47228 * 120.65368 * 179.72358 * 9 7 6 11 11 O 1.21626 * 120.00263 * 269.72898 * 10 9 7 12 12 N 1.34781 * 119.99547 * 89.73058 * 10 9 7 13 13 C 1.46494 * 120.00185 * 359.97438 * 12 10 9 14 14 C 1.46497 * 119.99611 * 180.02562 * 12 10 9 15 15 C 1.53779 * 113.61704 * 63.33615 * 14 12 10 16 16 C 1.53781 * 87.07945 * 89.11365 * 15 14 12 17 17 N 1.46496 * 113.61478 * 270.79713 * 16 15 14 18 18 C 1.36942 * 119.99999 * 202.21982 * 17 16 15 19 19 H 1.07995 * 120.00210 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99801 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99944 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99877 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46909 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47088 * 120.00041 * 22 20 18 25 25 H 1.48496 * 109.46829 * 240.00116 * 22 20 18 26 26 C 1.53780 * 87.17599 * 25.39382 * 16 15 14 27 27 H 1.08996 * 109.46842 * 60.00422 * 1 2 3 28 28 H 1.09001 * 109.46773 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47238 * 300.00162 * 1 2 3 30 30 H 1.07991 * 120.30761 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.34838 * 180.02562 * 5 4 3 32 32 H 0.96699 * 113.99563 * 270.24943 * 8 7 6 33 33 H 1.09003 * 109.47140 * 268.62865 * 13 12 10 34 34 H 1.09001 * 109.47212 * 28.62503 * 13 12 10 35 35 H 1.08994 * 109.47386 * 148.62488 * 13 12 10 36 36 H 1.09006 * 112.91019 * 292.08043 * 14 12 10 37 37 H 1.08994 * 113.61442 * 334.56731 * 15 14 12 38 38 H 1.09001 * 113.61408 * 203.66242 * 15 14 12 39 39 H 1.09009 * 113.61361 * 139.98297 * 16 15 14 40 40 H 0.96998 * 120.00010 * 22.21966 * 17 16 15 41 41 H 0.97000 * 119.99959 * 180.02562 * 21 20 18 42 42 H 1.08995 * 113.61521 * 89.15616 * 26 16 15 43 43 H 1.08993 * 113.61437 * 220.06296 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3044 2.3866 0.0005 5 6 1.9626 3.5984 0.0011 6 7 3.2819 3.6625 0.0016 7 6 4.0354 2.5766 0.0065 8 8 5.3846 2.6942 0.0128 9 6 3.4472 1.3030 0.0002 10 6 4.2822 0.0905 -0.0005 11 8 4.6272 -0.4099 -1.0540 12 7 4.6644 -0.4651 1.1665 13 6 4.2494 0.1379 2.4355 14 6 5.4958 -1.6713 1.1659 15 6 6.8823 -1.4636 0.5340 16 6 7.3734 -1.0612 1.9346 17 7 7.2339 0.3695 2.2169 18 6 8.0078 0.9556 3.1828 19 1 8.7213 0.3631 3.7362 20 6 7.8751 2.3112 3.4506 21 7 7.0059 3.0333 2.7758 22 14 8.9313 3.1108 4.7676 23 1 9.8231 2.0900 5.3742 24 1 9.7537 4.1860 4.1574 25 1 8.0570 3.6919 5.8179 26 6 6.2260 -1.9154 2.4992 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2250 2.3527 0.0014 31 1 1.3880 4.5129 0.0019 32 1 5.7803 2.7311 -0.8688 33 1 5.0049 0.8523 2.7626 34 1 3.2980 0.6520 2.2995 35 1 4.1365 -0.6419 3.1886 36 1 4.9706 -2.5485 0.7878 37 1 6.9145 -0.6498 -0.1904 38 1 7.3339 -2.3825 0.1602 39 1 8.3642 -1.4458 2.1771 40 1 6.5933 0.9017 1.7196 41 1 6.9134 3.9806 2.9626 42 1 6.4979 -2.9580 2.6636 43 1 5.7292 -1.4658 3.3588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999710155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:48 Heat of formation + Delta-G solvation = -36.726110 kcal Electronic energy + Delta-G solvation = -29139.257412 eV Core-core repulsion = 25186.748734 eV Total energy + Delta-G solvation = -3952.508679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.23420 -41.06716 -39.77494 -38.95566 -37.66880 -35.70617 -34.92384 -32.77677 -31.76868 -31.39469 -28.42355 -28.20988 -26.72305 -26.02008 -25.47517 -24.00716 -23.78070 -21.46154 -20.13298 -19.50488 -19.25391 -18.57503 -18.38452 -17.81886 -17.56277 -16.92274 -16.65111 -16.55496 -16.09455 -15.83455 -15.56772 -15.28754 -15.16155 -14.74573 -14.64054 -14.09072 -13.86091 -13.63688 -13.44826 -13.31043 -13.04819 -12.78164 -12.69667 -12.66005 -12.50339 -12.46642 -12.40984 -12.05466 -11.70626 -11.62030 -11.31618 -10.98385 -10.76840 -10.41914 -10.02273 -9.97015 -9.52246 -8.83743 -7.73226 -5.05226 -0.20966 0.15463 1.48306 1.49486 1.51274 1.59655 1.93293 2.01744 2.52454 2.63033 2.85314 3.32745 3.50426 3.65105 3.77926 3.82072 3.91266 3.99143 4.01244 4.20305 4.30620 4.32891 4.38198 4.39006 4.42217 4.54045 4.58950 4.73499 4.85394 4.86576 4.88929 5.03628 5.11535 5.18130 5.29497 5.29812 5.45213 5.61118 5.75096 6.09128 6.35836 6.40576 6.58280 6.95603 7.10020 7.49535 8.27320 8.55229 9.42371 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.005593 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.770514 B = 5005.315563 C = 6282.246655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.325 6.325 3 C 0.207 3.793 4 C -0.264 4.264 5 C 0.169 3.831 6 N -0.549 5.549 7 C 0.380 3.620 8 O -0.462 6.462 9 C -0.255 4.255 10 C 0.587 3.413 11 O -0.575 6.575 12 N -0.571 5.571 13 C 0.089 3.911 14 C 0.123 3.877 15 C -0.153 4.153 16 C 0.144 3.856 17 N -0.717 5.717 18 C -0.252 4.252 19 H 0.069 0.931 20 C -0.060 4.060 21 N -0.926 5.926 22 Si 0.958 3.042 23 H -0.272 1.272 24 H -0.301 1.301 25 H -0.297 1.297 26 C -0.160 4.160 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.192 0.808 31 H 0.206 0.794 32 H 0.404 0.596 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.114 0.886 39 H 0.062 0.938 40 H 0.387 0.613 41 H 0.243 0.757 42 H 0.118 0.882 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.190 -5.999 -4.830 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.152 3.848 4 C -0.284 4.284 5 C 0.014 3.986 6 N -0.272 5.272 7 C 0.201 3.799 8 O -0.270 6.270 9 C -0.263 4.263 10 C 0.374 3.626 11 O -0.456 6.456 12 N -0.301 5.301 13 C -0.054 4.054 14 C 0.020 3.980 15 C -0.192 4.192 16 C 0.034 3.966 17 N -0.358 5.358 18 C -0.384 4.384 19 H 0.087 0.913 20 C -0.255 4.255 21 N -0.574 5.574 22 Si 0.789 3.211 23 H -0.197 1.197 24 H -0.229 1.229 25 H -0.224 1.224 26 C -0.200 4.200 27 H 0.098 0.902 28 H 0.138 0.862 29 H 0.098 0.902 30 H 0.209 0.791 31 H 0.223 0.777 32 H 0.263 0.737 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.057 0.943 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.223 0.777 41 H 0.052 0.948 42 H 0.137 0.863 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.394 -5.701 -4.612 17.959 hybrid contribution 0.253 0.342 0.052 0.429 sum -16.140 -5.359 -4.561 17.608 Atomic orbital electron populations 1.23598 0.74520 1.06363 1.03588 1.86064 1.25109 1.25715 1.86738 1.19176 0.89406 0.86550 0.89713 1.22489 1.03494 0.90887 1.11526 1.23197 0.87829 0.99282 0.88337 1.67390 1.08935 1.32105 1.18757 1.19087 0.85248 0.85833 0.89771 1.85067 1.13639 1.94947 1.33298 1.20290 0.93110 0.94682 1.18170 1.17750 0.78935 0.82641 0.83258 1.90701 1.58388 1.64469 1.32040 1.47403 1.49498 1.27265 1.05917 1.21792 0.99553 0.98917 0.85124 1.21988 0.90376 0.86306 0.99294 1.23693 0.96263 1.01879 0.97414 1.21441 0.96448 0.85087 0.93667 1.42509 1.46014 1.03967 1.43299 1.19509 1.14901 0.92178 1.11818 0.91290 1.25412 1.01035 0.97167 1.01842 1.69914 1.38218 1.05787 1.43515 0.85316 0.78294 0.78242 0.79234 1.19669 1.22903 1.22439 1.24096 0.98570 1.02165 0.95212 0.90246 0.86156 0.90154 0.79127 0.77699 0.73682 0.92355 0.92325 0.89675 0.89360 0.94253 0.86803 0.92023 0.77674 0.94771 0.86348 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.84 113.37 1.12 1.27 16 2 O -0.33 -8.34 10.03 -88.03 -0.88 -9.22 16 3 C 0.21 5.89 6.32 23.09 0.15 6.04 16 4 C -0.26 -5.38 9.09 22.43 0.20 -5.18 16 5 C 0.17 3.96 11.15 84.58 0.94 4.90 16 6 N -0.55 -18.85 10.37 -308.26 -3.20 -22.04 16 7 C 0.38 14.80 7.77 85.14 0.66 15.46 16 8 O -0.46 -20.33 13.02 -87.30 -1.14 -21.46 16 9 C -0.25 -9.41 3.92 -19.83 -0.08 -9.49 16 10 C 0.59 24.16 5.97 86.61 0.52 24.67 16 11 O -0.58 -26.35 16.07 -4.11 -0.07 -26.42 16 12 N -0.57 -22.14 2.09 -823.42 -1.72 -23.86 16 13 C 0.09 3.41 8.66 127.77 1.11 4.51 16 14 C 0.12 4.36 4.13 45.58 0.19 4.55 16 15 C -0.15 -5.76 7.13 31.12 0.22 -5.54 16 16 C 0.14 5.92 4.55 45.52 0.21 6.13 16 17 N -0.72 -36.51 4.05 -320.44 -1.30 -37.81 16 18 C -0.25 -14.01 9.98 84.03 0.84 -13.17 16 19 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 20 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 21 N -0.93 -55.61 13.06 21.65 0.28 -55.32 16 22 Si 0.96 46.69 29.55 68.60 2.03 48.72 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 25 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 26 C -0.16 -5.30 7.17 31.18 0.22 -5.07 16 27 H 0.08 0.69 7.71 -2.39 -0.02 0.68 16 28 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 0.70 7.70 -2.39 -0.02 0.68 16 30 H 0.19 1.96 6.45 -2.92 -0.02 1.94 16 31 H 0.21 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.40 14.65 9.06 -74.06 -0.67 13.98 16 33 H 0.06 2.80 6.12 -2.39 -0.01 2.79 16 34 H 0.06 2.10 6.50 -2.39 -0.02 2.09 16 35 H 0.08 2.83 6.56 -2.39 -0.02 2.81 16 36 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 37 H 0.04 1.76 7.19 -2.39 -0.02 1.74 16 38 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 39 H 0.06 2.47 8.12 -2.38 -0.02 2.45 16 40 H 0.39 20.94 5.52 -92.71 -0.51 20.43 16 41 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.07 2.41 5.90 -2.39 -0.01 2.40 16 Total: -1.00 -79.17 354.33 0.67 -78.50 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.11 Total: 42.77 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 6.76 Total: 26.15 kcal Atomic # 7 Polarization: -133.11 SS G_CDS: -5.93 Total: -139.03 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -2.09 Total: -57.10 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -79.17 0.67 -78.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999710155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.777 kcal (2) G-P(sol) polarization free energy of solvation -79.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds