Wall clock time and date at job start Tue Mar 31 2020 13:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35535 * 117.00311 * 2 1 4 4 C 1.38818 * 120.89223 * 0.22545 * 3 2 1 5 5 C 1.38711 * 119.19522 * 180.29984 * 4 3 2 6 6 O 1.35526 * 119.46913 * 179.74593 * 5 4 3 7 7 N 1.32595 * 121.05685 * 359.71989 * 5 4 3 8 8 C 1.31611 * 121.97339 * 359.97438 * 7 5 4 9 9 C 1.39546 * 120.67124 * 0.02562 * 8 7 5 10 10 C 1.47338 * 120.55453 * 179.97438 * 9 8 7 11 11 O 1.21619 * 120.00253 * 234.12840 * 10 9 8 12 12 N 1.34777 * 120.00381 * 54.12496 * 10 9 8 13 13 C 1.46929 * 120.62802 * 355.83668 * 12 10 9 14 14 C 1.53188 * 108.77648 * 126.36943 * 13 12 10 15 15 C 1.53039 * 109.31328 * 54.63402 * 14 13 12 16 16 C 1.53041 * 109.53821 * 298.63562 * 15 14 13 17 17 H 1.09002 * 109.50019 * 301.38193 * 16 15 14 18 18 N 1.46493 * 109.49857 * 181.31773 * 16 15 14 19 19 C 1.36935 * 120.00286 * 155.00127 * 18 16 15 20 20 H 1.07997 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38810 * 119.99899 * 179.97438 * 19 18 16 22 22 N 1.31629 * 119.99693 * 179.72300 * 21 19 18 23 23 Si 1.86796 * 120.00491 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46993 * 89.99872 * 23 21 19 25 25 H 1.48501 * 109.47541 * 209.99868 * 23 21 19 26 26 H 1.48506 * 109.46953 * 330.00157 * 23 21 19 27 27 C 1.46920 * 120.63315 * 175.81474 * 12 10 9 28 28 H 1.09007 * 109.46981 * 300.00337 * 1 2 3 29 29 H 1.09005 * 109.46947 * 59.99437 * 1 2 3 30 30 H 1.08996 * 109.47290 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.40261 * 0.03789 * 4 3 2 32 32 H 0.96703 * 113.99551 * 269.96882 * 6 5 4 33 33 H 1.07998 * 119.66261 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.58516 * 6.58163 * 13 12 10 35 35 H 1.09000 * 109.58658 * 246.15997 * 13 12 10 36 36 H 1.09010 * 109.49349 * 294.68300 * 14 13 12 37 37 H 1.08998 * 109.52694 * 174.60614 * 14 13 12 38 38 H 1.08996 * 109.45878 * 178.61843 * 15 14 13 39 39 H 1.08996 * 109.44874 * 58.65049 * 15 14 13 40 40 H 0.97006 * 119.99657 * 334.99862 * 18 16 15 41 41 H 0.97002 * 119.99716 * 180.02562 * 22 21 19 42 42 H 1.09002 * 109.59032 * 113.84706 * 27 12 10 43 43 H 1.08994 * 109.58883 * 353.41374 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3066 2.3835 0.0047 5 6 1.9726 3.6002 -0.0018 6 8 1.2578 4.7516 -0.0025 7 7 3.2975 3.6547 -0.0068 8 6 4.0397 2.5679 -0.0054 9 6 3.4500 1.3032 0.0010 10 6 4.2835 0.0882 0.0020 11 8 4.1154 -0.7653 -0.8480 12 7 5.2322 -0.0776 0.9448 13 6 5.5092 0.9835 1.9227 14 6 5.4130 0.3921 3.3325 15 6 6.3433 -0.8184 3.4382 16 6 5.9070 -1.8884 2.4347 17 1 4.8763 -2.1791 2.6380 18 7 6.7787 -3.0592 2.5584 19 6 6.3247 -4.2941 2.1789 20 1 5.3238 -4.4049 1.7887 21 6 7.1509 -5.4034 2.2956 22 7 6.7125 -6.5912 1.9358 23 14 8.8824 -5.2117 2.9697 24 1 8.8610 -5.3821 4.4448 25 1 9.7658 -6.2410 2.3653 26 1 9.3969 -3.8594 2.6351 27 6 6.0088 -1.3228 1.0147 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2271 2.3514 0.0090 32 1 1.0473 5.0832 -0.8862 33 1 5.1161 2.6558 -0.0101 34 1 4.7770 1.7833 1.8112 35 1 6.5121 1.3781 1.7595 36 1 4.3867 0.0803 3.5270 37 1 5.7095 1.1439 4.0640 38 1 6.2952 -1.2263 4.4478 39 1 7.3657 -0.5106 3.2192 40 1 7.6776 -2.9597 2.9092 41 1 7.2898 -7.3665 2.0177 42 1 7.0525 -1.1164 0.7776 43 1 5.6064 -2.0448 0.3042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000219565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:01 Heat of formation + Delta-G solvation = -46.823296 kcal Electronic energy + Delta-G solvation = -27598.310895 eV Core-core repulsion = 23645.364370 eV Total energy + Delta-G solvation = -3952.946526 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.40053 -39.67248 -39.05051 -37.40645 -37.02559 -34.61900 -32.42790 -31.93181 -31.39620 -30.96591 -28.74648 -27.87431 -25.72110 -24.03126 -23.77992 -23.23411 -21.73540 -20.65660 -19.67374 -19.28614 -17.96621 -17.54454 -17.48206 -17.11500 -16.38023 -15.78927 -15.54937 -15.09650 -14.96406 -14.83567 -14.52798 -14.28138 -14.11791 -13.73782 -13.37831 -13.12275 -12.94861 -12.65644 -12.59189 -12.40508 -12.28295 -11.95189 -11.84997 -11.61296 -11.21380 -10.92451 -10.72667 -10.66239 -10.31594 -10.19601 -9.89782 -9.67376 -9.57912 -9.46136 -9.10555 -9.06759 -8.39507 -7.29306 -5.76644 -3.14073 0.35284 0.86545 2.64908 2.74463 3.00305 3.12652 3.37167 3.39398 3.44650 3.46185 4.14338 4.28988 4.48605 4.58403 4.70418 4.77432 4.79602 4.80010 5.01087 5.04748 5.11949 5.16131 5.25147 5.32851 5.41691 5.45857 5.50729 5.71579 5.81090 5.88735 5.91116 6.03008 6.08621 6.24683 6.38429 6.64440 6.72159 6.76684 6.91033 7.02979 7.46798 7.58108 7.99352 8.32384 8.42293 9.19249 9.90798 10.09316 11.41396 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.003279 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.940782 B = 8536.600922 C = 9269.621158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.285 6.285 3 C 0.228 3.772 4 C -0.283 4.283 5 C 0.360 3.640 6 O -0.480 6.480 7 N -0.526 5.526 8 C 0.190 3.810 9 C -0.217 4.217 10 C 0.568 3.432 11 O -0.520 6.520 12 N -0.600 5.600 13 C 0.100 3.900 14 C -0.129 4.129 15 C -0.129 4.129 16 C 0.173 3.827 17 H 0.060 0.940 18 N -0.742 5.742 19 C -0.247 4.247 20 H 0.092 0.908 21 C 0.007 3.993 22 N -0.931 5.931 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.094 3.906 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.151 0.849 32 H 0.405 0.595 33 H 0.174 0.826 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.363 0.637 41 H 0.260 0.740 42 H 0.063 0.937 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.852 23.762 -2.167 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.194 6.194 3 C 0.173 3.827 4 C -0.305 4.305 5 C 0.182 3.818 6 O -0.288 6.288 7 N -0.249 5.249 8 C 0.032 3.968 9 C -0.224 4.224 10 C 0.353 3.647 11 O -0.395 6.395 12 N -0.333 5.333 13 C -0.023 4.023 14 C -0.168 4.168 15 C -0.168 4.168 16 C 0.062 3.938 17 H 0.078 0.922 18 N -0.384 5.384 19 C -0.377 4.377 20 H 0.109 0.891 21 C -0.189 4.189 22 N -0.578 5.578 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.030 4.030 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.169 0.831 32 H 0.264 0.736 33 H 0.191 0.809 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.196 0.804 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.666 23.595 -2.106 25.980 hybrid contribution 0.521 -0.504 0.011 0.725 sum -10.145 23.091 -2.095 25.309 Atomic orbital electron populations 1.23276 0.77247 1.05194 1.01616 1.86267 1.22181 1.25024 1.85888 1.19054 0.90650 0.84897 0.88126 1.22059 1.02196 0.91581 1.14668 1.18937 0.86572 0.84933 0.91317 1.84706 1.71227 1.38720 1.34171 1.67222 1.06478 1.32996 1.18154 1.22640 0.99951 0.84492 0.89685 1.20466 0.91631 0.96574 1.13695 1.17657 0.79777 0.85354 0.81864 1.90842 1.68363 1.43361 1.36940 1.48152 1.36813 1.18069 1.30307 1.21943 1.01442 0.90046 0.88918 1.21861 1.00993 0.98152 0.95775 1.21866 0.98916 0.95350 1.00644 1.20467 0.95649 0.86578 0.91100 0.92221 1.42728 1.14013 1.03943 1.77720 1.19103 1.00044 0.82803 1.35767 0.89058 1.24687 0.97901 0.95242 1.01103 1.69713 1.36397 0.98313 1.53420 0.86548 0.85943 0.77055 0.78945 1.21085 1.21732 1.20272 1.22733 0.94506 0.83936 1.01776 0.92037 0.92074 0.87180 0.83122 0.73611 0.80870 0.90199 0.90930 0.91483 0.90845 0.91285 0.92031 0.80448 0.93013 0.91913 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.84 101.05 0.99 1.16 16 2 O -0.28 -3.76 9.82 -19.13 -0.19 -3.95 16 3 C 0.23 2.82 6.73 -38.36 -0.26 2.56 16 4 C -0.28 -2.68 9.02 -39.19 -0.35 -3.04 16 5 C 0.36 3.56 7.73 -17.05 -0.13 3.43 16 6 O -0.48 -3.72 13.54 -18.27 -0.25 -3.97 16 7 N -0.53 -5.83 10.37 -13.04 -0.14 -5.97 16 8 C 0.19 2.07 8.60 -17.16 -0.15 1.92 16 9 C -0.22 -2.87 4.91 -104.70 -0.51 -3.38 16 10 C 0.57 9.42 6.91 -12.56 -0.09 9.33 16 11 O -0.52 -10.89 16.25 4.43 0.07 -10.82 16 12 N -0.60 -9.14 2.97 -174.07 -0.52 -9.66 16 13 C 0.10 1.12 5.53 -3.71 -0.02 1.10 16 14 C -0.13 -1.49 6.08 -26.61 -0.16 -1.66 16 15 C -0.13 -1.89 5.35 -26.69 -0.14 -2.03 16 16 C 0.17 3.30 2.92 -67.81 -0.20 3.10 16 17 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 18 N -0.74 -17.30 4.93 -53.31 -0.26 -17.56 16 19 C -0.25 -7.00 10.41 -15.06 -0.16 -7.15 16 20 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 21 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 22 N -0.93 -29.46 13.97 55.49 0.78 -28.68 16 23 Si 0.88 21.96 27.73 -169.99 -4.71 17.25 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 27 C 0.09 1.74 6.01 -3.71 -0.02 1.72 16 28 H 0.06 0.37 7.70 -51.92 -0.40 -0.03 16 29 H 0.06 0.36 7.72 -51.93 -0.40 -0.04 16 30 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.15 1.02 6.45 -52.49 -0.34 0.68 16 32 H 0.41 1.04 9.06 45.56 0.41 1.45 16 33 H 0.17 1.49 7.36 -52.49 -0.39 1.11 16 34 H 0.08 0.79 4.73 -51.93 -0.25 0.55 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.36 8.19 5.66 -40.82 -0.23 7.96 16 41 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.10 2.13 7.03 -51.93 -0.36 1.77 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -37.23 353.00 -6.12 -43.35 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.92 Total: 7.54 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -1.30 Total: 7.16 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.14 Total: -61.87 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.36 Total: -18.74 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.23 -6.12 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000219565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.477 kcal (2) G-P(sol) polarization free energy of solvation -37.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds