Wall clock time and date at job start Tue Mar 31 2020 13:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35535 * 117.00311 * 2 1 4 4 C 1.38818 * 120.89223 * 0.22545 * 3 2 1 5 5 C 1.38711 * 119.19522 * 180.29984 * 4 3 2 6 6 O 1.35526 * 119.46913 * 179.74593 * 5 4 3 7 7 N 1.32595 * 121.05685 * 359.71989 * 5 4 3 8 8 C 1.31611 * 121.97339 * 359.97438 * 7 5 4 9 9 C 1.39546 * 120.67124 * 0.02562 * 8 7 5 10 10 C 1.47338 * 120.55453 * 179.97438 * 9 8 7 11 11 O 1.21619 * 120.00253 * 234.12840 * 10 9 8 12 12 N 1.34777 * 120.00381 * 54.12496 * 10 9 8 13 13 C 1.46929 * 120.62802 * 355.83668 * 12 10 9 14 14 C 1.53188 * 108.77648 * 126.36943 * 13 12 10 15 15 C 1.53039 * 109.31328 * 54.63402 * 14 13 12 16 16 C 1.53041 * 109.53821 * 298.63562 * 15 14 13 17 17 H 1.09002 * 109.50019 * 301.38193 * 16 15 14 18 18 N 1.46493 * 109.49857 * 181.31773 * 16 15 14 19 19 C 1.36935 * 120.00286 * 155.00127 * 18 16 15 20 20 H 1.07997 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38810 * 119.99899 * 179.97438 * 19 18 16 22 22 N 1.31629 * 119.99693 * 179.72300 * 21 19 18 23 23 Si 1.86796 * 120.00491 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46993 * 89.99872 * 23 21 19 25 25 H 1.48501 * 109.47541 * 209.99868 * 23 21 19 26 26 H 1.48506 * 109.46953 * 330.00157 * 23 21 19 27 27 C 1.46920 * 120.63315 * 175.81474 * 12 10 9 28 28 H 1.09007 * 109.46981 * 300.00337 * 1 2 3 29 29 H 1.09005 * 109.46947 * 59.99437 * 1 2 3 30 30 H 1.08996 * 109.47290 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.40261 * 0.03789 * 4 3 2 32 32 H 0.96703 * 113.99551 * 269.96882 * 6 5 4 33 33 H 1.07998 * 119.66261 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.58516 * 6.58163 * 13 12 10 35 35 H 1.09000 * 109.58658 * 246.15997 * 13 12 10 36 36 H 1.09010 * 109.49349 * 294.68300 * 14 13 12 37 37 H 1.08998 * 109.52694 * 174.60614 * 14 13 12 38 38 H 1.08996 * 109.45878 * 178.61843 * 15 14 13 39 39 H 1.08996 * 109.44874 * 58.65049 * 15 14 13 40 40 H 0.97006 * 119.99657 * 334.99862 * 18 16 15 41 41 H 0.97002 * 119.99716 * 180.02562 * 22 21 19 42 42 H 1.09002 * 109.59032 * 113.84706 * 27 12 10 43 43 H 1.08994 * 109.58883 * 353.41374 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3066 2.3835 0.0047 5 6 1.9726 3.6002 -0.0018 6 8 1.2578 4.7516 -0.0025 7 7 3.2975 3.6547 -0.0068 8 6 4.0397 2.5679 -0.0054 9 6 3.4500 1.3032 0.0010 10 6 4.2835 0.0882 0.0020 11 8 4.1154 -0.7653 -0.8480 12 7 5.2322 -0.0776 0.9448 13 6 5.5092 0.9835 1.9227 14 6 5.4130 0.3921 3.3325 15 6 6.3433 -0.8184 3.4382 16 6 5.9070 -1.8884 2.4347 17 1 4.8763 -2.1791 2.6380 18 7 6.7787 -3.0592 2.5584 19 6 6.3247 -4.2941 2.1789 20 1 5.3238 -4.4049 1.7887 21 6 7.1509 -5.4034 2.2956 22 7 6.7125 -6.5912 1.9358 23 14 8.8824 -5.2117 2.9697 24 1 8.8610 -5.3821 4.4448 25 1 9.7658 -6.2410 2.3653 26 1 9.3969 -3.8594 2.6351 27 6 6.0088 -1.3228 1.0147 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2271 2.3514 0.0090 32 1 1.0473 5.0832 -0.8862 33 1 5.1161 2.6558 -0.0101 34 1 4.7770 1.7833 1.8112 35 1 6.5121 1.3781 1.7595 36 1 4.3867 0.0803 3.5270 37 1 5.7095 1.1439 4.0640 38 1 6.2952 -1.2263 4.4478 39 1 7.3657 -0.5106 3.2192 40 1 7.6776 -2.9597 2.9092 41 1 7.2898 -7.3665 2.0177 42 1 7.0525 -1.1164 0.7776 43 1 5.6064 -2.0448 0.3042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000219565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:00 Heat of formation + Delta-G solvation = -79.537592 kcal Electronic energy + Delta-G solvation = -27599.729494 eV Core-core repulsion = 23645.364370 eV Total energy + Delta-G solvation = -3954.365124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.30026 -40.84304 -39.84418 -38.72731 -37.84565 -36.32167 -34.07247 -32.94065 -32.80066 -32.01561 -30.27041 -28.60384 -26.88025 -25.70045 -24.79539 -24.15985 -23.12796 -22.07216 -20.67673 -20.28134 -19.55779 -18.89626 -18.41539 -17.99374 -17.36410 -16.92067 -16.67198 -16.31124 -16.20187 -15.78422 -15.74568 -15.49771 -15.40868 -15.06642 -14.84785 -14.38688 -14.09916 -13.93253 -13.86354 -13.70653 -13.28701 -13.00022 -12.94196 -12.62498 -12.54822 -12.51886 -12.16621 -11.93955 -11.88702 -11.80105 -11.37998 -11.29710 -11.09225 -10.65493 -10.24365 -10.03423 -9.82362 -9.27011 -8.04422 -5.40847 -0.46555 0.04337 1.37523 1.43223 1.48472 1.51260 1.90003 1.98338 2.31277 2.47773 2.63145 3.26153 3.33320 3.40552 3.52106 3.67050 3.89273 4.01157 4.02689 4.07076 4.12785 4.26123 4.26768 4.34776 4.35401 4.39491 4.57285 4.59369 4.65312 4.71730 4.85112 4.89319 5.00554 5.11464 5.16653 5.35421 5.42376 5.46415 5.74159 6.00685 6.19153 6.35979 6.51187 6.74067 7.03917 7.07759 7.76871 7.99927 9.17487 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.003279 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.940782 B = 8536.600922 C = 9269.621158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.325 6.325 3 C 0.216 3.784 4 C -0.272 4.272 5 C 0.368 3.632 6 O -0.482 6.482 7 N -0.537 5.537 8 C 0.205 3.795 9 C -0.242 4.242 10 C 0.565 3.435 11 O -0.580 6.580 12 N -0.596 5.596 13 C 0.095 3.905 14 C -0.122 4.122 15 C -0.120 4.120 16 C 0.170 3.830 17 H 0.026 0.974 18 N -0.742 5.742 19 C -0.238 4.238 20 H 0.043 0.957 21 C -0.065 4.065 22 N -0.986 5.986 23 Si 0.965 3.035 24 H -0.274 1.274 25 H -0.297 1.297 26 H -0.244 1.244 27 C 0.107 3.893 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.179 0.821 32 H 0.429 0.571 33 H 0.196 0.804 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.372 0.628 41 H 0.259 0.741 42 H 0.076 0.924 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.869 28.170 -0.638 29.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.234 6.234 3 C 0.160 3.840 4 C -0.294 4.294 5 C 0.191 3.809 6 O -0.293 6.293 7 N -0.259 5.259 8 C 0.047 3.953 9 C -0.248 4.248 10 C 0.353 3.647 11 O -0.460 6.460 12 N -0.329 5.329 13 C -0.026 4.026 14 C -0.161 4.161 15 C -0.158 4.158 16 C 0.060 3.940 17 H 0.045 0.955 18 N -0.386 5.386 19 C -0.369 4.369 20 H 0.061 0.939 21 C -0.257 4.257 22 N -0.636 5.636 23 Si 0.791 3.209 24 H -0.200 1.200 25 H -0.224 1.224 26 H -0.168 1.168 27 C -0.018 4.018 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.130 0.870 31 H 0.196 0.804 32 H 0.292 0.708 33 H 0.213 0.787 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.072 0.928 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.206 0.794 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.715 28.124 -0.559 29.760 hybrid contribution -0.007 -1.797 -0.520 1.871 sum -9.722 26.326 -1.078 28.085 Atomic orbital electron populations 1.23574 0.74932 1.06110 1.03590 1.86224 1.24868 1.26276 1.86081 1.19302 0.90671 0.85555 0.88447 1.22220 1.03379 0.90252 1.13557 1.19099 0.86448 0.85643 0.89671 1.84661 1.70704 1.37704 1.36279 1.67338 1.07145 1.32628 1.18801 1.22878 1.00881 0.83317 0.88262 1.20300 0.91796 0.95731 1.17019 1.18236 0.79590 0.85861 0.81005 1.90800 1.69948 1.45864 1.39411 1.48182 1.36011 1.17733 1.30935 1.22321 1.03837 0.89035 0.87412 1.21868 0.99540 0.97696 0.96987 1.21793 1.00699 0.94658 0.98667 1.20625 0.93468 0.86794 0.93070 0.95539 1.42626 1.14887 1.03381 1.77657 1.18949 0.98164 0.85270 1.34516 0.93930 1.25638 1.03319 0.94569 1.02126 1.69927 1.38494 0.99486 1.55680 0.85278 0.79105 0.78323 0.78229 1.19978 1.22410 1.16812 1.22236 0.95171 0.84715 0.99720 0.90018 0.89990 0.87024 0.80360 0.70795 0.78693 0.88299 0.87732 0.92845 0.86668 0.91178 0.89873 0.79409 0.93235 0.90573 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.84 113.37 1.12 1.29 16 2 O -0.32 -8.87 9.82 -87.60 -0.86 -9.73 16 3 C 0.22 5.22 6.73 23.06 0.16 5.38 16 4 C -0.27 -4.52 9.02 22.52 0.20 -4.32 16 5 C 0.37 6.15 7.73 84.69 0.65 6.80 16 6 O -0.48 -5.66 13.54 -88.29 -1.20 -6.86 16 7 N -0.54 -10.29 10.37 -307.94 -3.19 -13.48 16 8 C 0.20 3.98 8.60 85.04 0.73 4.71 16 9 C -0.24 -6.29 4.91 -19.92 -0.10 -6.38 16 10 C 0.56 19.47 6.91 86.64 0.60 20.07 16 11 O -0.58 -26.33 16.25 -3.30 -0.05 -26.39 16 12 N -0.60 -18.18 2.97 -822.88 -2.45 -20.62 16 13 C 0.09 1.84 5.53 86.36 0.48 2.32 16 14 C -0.12 -2.43 6.08 30.67 0.19 -2.24 16 15 C -0.12 -3.19 5.35 30.62 0.16 -3.03 16 16 C 0.17 6.61 2.92 45.07 0.13 6.74 16 17 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 18 N -0.74 -35.00 4.93 -322.58 -1.59 -36.59 16 19 C -0.24 -14.15 10.41 84.03 0.88 -13.28 16 20 H 0.04 2.88 8.06 -2.91 -0.02 2.86 16 21 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 22 N -0.99 -65.30 13.97 21.65 0.30 -65.00 16 23 Si 0.96 45.59 27.73 68.60 1.90 47.49 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.24 -10.11 6.52 99.48 0.65 -9.47 16 27 C 0.11 4.07 6.01 86.36 0.52 4.59 16 28 H 0.08 0.87 7.70 -2.38 -0.02 0.85 16 29 H 0.08 0.86 7.72 -2.38 -0.02 0.84 16 30 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.18 1.83 6.45 -2.91 -0.02 1.81 16 32 H 0.43 0.55 9.06 -74.05 -0.67 -0.12 16 33 H 0.20 2.74 7.36 -2.91 -0.02 2.72 16 34 H 0.10 1.62 4.73 -2.38 -0.01 1.61 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.12 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.37 16.14 5.66 -92.70 -0.52 15.61 16 41 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 42 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.04 2.13 7.03 -2.39 -0.02 2.11 16 Total: -1.00 -88.74 353.00 -1.14 -89.88 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -0.19 Total: 22.13 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 6.18 Total: 19.16 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -6.92 Total: -135.68 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -2.11 Total: -42.97 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Total: -88.74 -1.14 -89.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000219565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.338 kcal (2) G-P(sol) polarization free energy of solvation -88.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds