Wall clock time and date at job start Tue Mar 31 2020 13:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35521 * 116.99899 * 2 1 4 4 C 1.38824 * 120.89457 * 0.02562 * 3 2 1 5 5 C 1.38715 * 119.19852 * 179.97438 * 4 3 2 6 6 O 1.35515 * 119.47195 * 179.97438 * 5 4 3 7 7 N 1.32597 * 121.05294 * 0.02624 * 5 4 3 8 8 C 1.31609 * 121.97573 * 359.97410 * 7 5 4 9 9 C 1.39548 * 120.67156 * 359.73907 * 8 7 5 10 10 C 1.47339 * 120.55456 * 180.28659 * 9 8 7 11 11 O 1.21612 * 119.99964 * 126.02263 * 10 9 8 12 12 N 1.34776 * 120.00315 * 306.02089 * 10 9 8 13 13 C 1.46930 * 120.62752 * 3.88726 * 12 10 9 14 14 C 1.52765 * 109.00667 * 233.58312 * 13 12 10 15 15 C 1.53032 * 109.38419 * 305.58909 * 14 13 12 16 16 C 1.53040 * 109.54183 * 61.24036 * 15 14 13 17 17 H 1.08993 * 109.49774 * 58.58532 * 16 15 14 18 18 N 1.46497 * 109.52534 * 178.67017 * 16 15 14 19 19 C 1.36946 * 119.99698 * 204.85383 * 18 16 15 20 20 H 1.07997 * 120.00168 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99973 * 179.97438 * 19 18 16 22 22 N 1.31615 * 120.00115 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99793 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47308 * 89.99799 * 23 21 19 25 25 H 1.48505 * 109.46873 * 209.99901 * 23 21 19 26 26 H 1.48498 * 109.47141 * 329.99652 * 23 21 19 27 27 C 1.46921 * 120.63415 * 184.16684 * 12 10 9 28 28 H 1.09001 * 109.46932 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47301 * 299.99595 * 1 2 3 30 30 H 1.08995 * 109.46761 * 59.99883 * 1 2 3 31 31 H 1.07995 * 120.40071 * 359.97438 * 4 3 2 32 32 H 0.96708 * 113.99645 * 90.00613 * 6 5 4 33 33 H 1.07998 * 119.65983 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.58596 * 353.41569 * 13 12 10 35 35 H 1.09004 * 109.58419 * 113.84592 * 13 12 10 36 36 H 1.08998 * 109.56186 * 185.55154 * 14 13 12 37 37 H 1.09001 * 109.38304 * 65.51728 * 14 13 12 38 38 H 1.09010 * 109.45977 * 301.21984 * 15 14 13 39 39 H 1.08997 * 109.46278 * 181.26323 * 15 14 13 40 40 H 0.96997 * 120.00671 * 24.85058 * 18 16 15 41 41 H 0.96998 * 120.00018 * 179.97438 * 22 21 19 42 42 H 1.09000 * 109.58962 * 246.15879 * 27 12 10 43 43 H 1.09006 * 109.58636 * 6.57809 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3064 2.3834 0.0005 5 6 1.9725 3.6002 0.0011 6 8 1.2577 4.7515 0.0010 7 7 3.2973 3.6548 0.0005 8 6 4.0396 2.5680 0.0000 9 6 3.4500 1.3032 0.0054 10 6 4.2835 0.0883 0.0112 11 8 4.1164 -0.7597 0.8667 12 7 5.2311 -0.0834 -0.9317 13 6 5.5026 0.9690 -1.9204 14 6 5.4087 0.3705 -3.3227 15 6 6.3393 -0.8404 -3.4215 16 6 5.9046 -1.9039 -2.4105 17 1 4.8736 -2.1959 -2.6102 18 7 6.7760 -3.0757 -2.5272 19 6 6.3232 -4.3074 -2.1358 20 1 5.3236 -4.4150 -1.7415 21 6 7.1487 -5.4179 -2.2469 22 7 6.7137 -6.6016 -1.8703 23 14 8.8775 -5.2319 -2.9297 24 1 9.8212 -4.9509 -1.8180 25 1 9.2776 -6.4881 -3.6131 26 1 8.9081 -4.1088 -3.9007 27 6 6.0080 -1.3289 -0.9943 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2270 2.3513 0.0005 32 1 1.0500 5.0855 0.8845 33 1 5.1160 2.6560 -0.0008 34 1 4.7679 1.7674 -1.8154 35 1 6.5045 1.3685 -1.7629 36 1 5.7046 1.1177 -4.0591 37 1 4.3824 0.0572 -3.5144 38 1 7.3621 -0.5310 -3.2059 39 1 6.2902 -1.2550 -4.4283 40 1 7.6737 -2.9792 -2.8818 41 1 7.2904 -7.3776 -1.9483 42 1 7.0519 -1.1206 -0.7598 43 1 5.6066 -2.0462 -0.2784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000219567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:04 Heat of formation + Delta-G solvation = -46.855707 kcal Electronic energy + Delta-G solvation = -27600.327098 eV Core-core repulsion = 23647.379167 eV Total energy + Delta-G solvation = -3952.947931 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40147 -39.67843 -39.05186 -37.41287 -37.02847 -34.62244 -32.43248 -31.93198 -31.40896 -30.96664 -28.75154 -27.87665 -25.72323 -24.02982 -23.78066 -23.23394 -21.73536 -20.65786 -19.67402 -19.28372 -17.96687 -17.54396 -17.48094 -17.11930 -16.37879 -15.79245 -15.54781 -15.09938 -14.96480 -14.83663 -14.53245 -14.28076 -14.12096 -13.74073 -13.37880 -13.13074 -12.94777 -12.65837 -12.59731 -12.39910 -12.28437 -11.95285 -11.84971 -11.61961 -11.22024 -10.92405 -10.72536 -10.65640 -10.28990 -10.19719 -9.90259 -9.67606 -9.58035 -9.46190 -9.11305 -9.07142 -8.39274 -7.29374 -5.76633 -3.14088 0.35441 0.86524 2.64852 2.74385 3.00198 3.12615 3.37175 3.39640 3.44685 3.46133 4.14381 4.28912 4.48720 4.58406 4.70394 4.77393 4.79566 4.79839 5.01380 5.04921 5.11942 5.16285 5.25129 5.33185 5.42016 5.44817 5.51472 5.71932 5.80398 5.88777 5.91152 6.02928 6.08642 6.24590 6.38731 6.64488 6.72283 6.76651 6.90898 7.02997 7.46890 7.58025 7.99451 8.32351 8.42274 9.19322 9.90853 10.09349 11.41418 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020991 B = 0.003279 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.601565 B = 8536.796959 C = 9266.379512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.285 6.285 3 C 0.228 3.772 4 C -0.283 4.283 5 C 0.360 3.640 6 O -0.480 6.480 7 N -0.526 5.526 8 C 0.190 3.810 9 C -0.217 4.217 10 C 0.568 3.432 11 O -0.519 6.519 12 N -0.600 5.600 13 C 0.100 3.900 14 C -0.129 4.129 15 C -0.129 4.129 16 C 0.173 3.827 17 H 0.059 0.941 18 N -0.742 5.742 19 C -0.248 4.248 20 H 0.092 0.908 21 C 0.007 3.993 22 N -0.931 5.931 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.095 3.905 28 H 0.110 0.890 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.151 0.849 32 H 0.405 0.595 33 H 0.174 0.826 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.363 0.637 41 H 0.260 0.740 42 H 0.063 0.937 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.858 23.759 1.973 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.194 6.194 3 C 0.173 3.827 4 C -0.305 4.305 5 C 0.182 3.818 6 O -0.288 6.288 7 N -0.249 5.249 8 C 0.032 3.968 9 C -0.224 4.224 10 C 0.354 3.646 11 O -0.395 6.395 12 N -0.333 5.333 13 C -0.023 4.023 14 C -0.168 4.168 15 C -0.167 4.167 16 C 0.062 3.938 17 H 0.077 0.923 18 N -0.384 5.384 19 C -0.377 4.377 20 H 0.109 0.891 21 C -0.189 4.189 22 N -0.578 5.578 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.029 4.029 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.169 0.831 32 H 0.264 0.736 33 H 0.191 0.809 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.196 0.804 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.672 23.596 1.915 25.968 hybrid contribution 0.510 -0.512 -0.039 0.724 sum -10.162 23.083 1.876 25.291 Atomic orbital electron populations 1.23275 0.77237 1.05197 1.01620 1.86264 1.22191 1.25030 1.85888 1.19052 0.90652 0.84898 0.88135 1.22066 1.02196 0.91584 1.14660 1.18937 0.86567 0.84943 0.91315 1.84705 1.71241 1.38688 1.34183 1.67222 1.06474 1.33007 1.18147 1.22641 0.99954 0.84494 0.89674 1.20466 0.91626 0.96578 1.13699 1.17653 0.79744 0.85298 0.81936 1.90840 1.68309 1.43681 1.36659 1.48151 1.36920 1.18385 1.29879 1.21853 1.01485 0.90213 0.88772 1.21789 1.01005 0.98168 0.95858 1.21863 0.98903 0.95358 1.00623 1.20460 0.95638 0.86584 0.91108 0.92272 1.42720 1.14338 1.04151 1.77206 1.19104 1.00271 0.83075 1.35297 0.89059 1.24683 0.97916 0.95258 1.01049 1.69704 1.36513 0.98525 1.53089 0.86556 0.86122 0.76881 0.78990 1.21017 1.21743 1.20280 1.22729 0.94518 0.83899 1.01801 0.87180 0.92061 0.92042 0.83125 0.73611 0.80864 0.90216 0.90947 0.90814 0.91509 0.92028 0.91316 0.80442 0.93008 0.91885 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.84 101.05 0.99 1.16 16 2 O -0.28 -3.76 9.83 -18.83 -0.19 -3.95 16 3 C 0.23 2.82 6.73 -38.36 -0.26 2.56 16 4 C -0.28 -2.69 9.02 -39.19 -0.35 -3.04 16 5 C 0.36 3.56 7.73 -17.05 -0.13 3.43 16 6 O -0.48 -3.72 13.54 -18.24 -0.25 -3.97 16 7 N -0.53 -5.83 10.36 -13.04 -0.14 -5.97 16 8 C 0.19 2.07 8.60 -17.16 -0.15 1.92 16 9 C -0.22 -2.87 4.90 -104.70 -0.51 -3.38 16 10 C 0.57 9.41 6.90 -12.56 -0.09 9.33 16 11 O -0.52 -10.88 16.27 4.69 0.08 -10.81 16 12 N -0.60 -9.12 2.98 -174.32 -0.52 -9.64 16 13 C 0.10 1.12 5.50 -3.93 -0.02 1.10 16 14 C -0.13 -1.50 6.06 -26.84 -0.16 -1.66 16 15 C -0.13 -1.89 5.36 -26.69 -0.14 -2.03 16 16 C 0.17 3.30 2.92 -67.81 -0.20 3.10 16 17 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 18 N -0.74 -17.30 4.93 -53.31 -0.26 -17.57 16 19 C -0.25 -7.01 10.41 -15.05 -0.16 -7.16 16 20 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 21 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 22 N -0.93 -29.45 13.97 55.49 0.78 -28.68 16 23 Si 0.88 21.95 27.74 -169.99 -4.71 17.23 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.38 6.52 56.52 0.37 -6.02 16 27 C 0.09 1.74 6.01 -3.71 -0.02 1.71 16 28 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.36 7.71 -51.93 -0.40 -0.04 16 30 H 0.06 0.37 7.71 -51.93 -0.40 -0.03 16 31 H 0.15 1.02 6.45 -52.49 -0.34 0.68 16 32 H 0.41 1.04 9.06 45.56 0.41 1.45 16 33 H 0.17 1.49 7.36 -52.49 -0.39 1.10 16 34 H 0.08 0.79 4.74 -51.93 -0.25 0.55 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.36 8.19 5.66 -40.82 -0.23 7.96 16 41 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.10 2.13 7.03 -51.93 -0.36 1.77 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -37.23 352.98 -6.11 -43.35 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.92 Total: 7.54 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.30 Total: 7.14 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.14 Total: -61.86 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.36 Total: -18.72 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.23 -6.11 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000219567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.508 kcal (2) G-P(sol) polarization free energy of solvation -37.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds