Wall clock time and date at job start Tue Mar 31 2020 13:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35521 * 116.99899 * 2 1 4 4 C 1.38824 * 120.89457 * 0.02562 * 3 2 1 5 5 C 1.38715 * 119.19852 * 179.97438 * 4 3 2 6 6 O 1.35515 * 119.47195 * 179.97438 * 5 4 3 7 7 N 1.32597 * 121.05294 * 0.02624 * 5 4 3 8 8 C 1.31609 * 121.97573 * 359.97410 * 7 5 4 9 9 C 1.39548 * 120.67156 * 359.73907 * 8 7 5 10 10 C 1.47339 * 120.55456 * 180.28659 * 9 8 7 11 11 O 1.21612 * 119.99964 * 126.02263 * 10 9 8 12 12 N 1.34776 * 120.00315 * 306.02089 * 10 9 8 13 13 C 1.46930 * 120.62752 * 3.88726 * 12 10 9 14 14 C 1.52765 * 109.00667 * 233.58312 * 13 12 10 15 15 C 1.53032 * 109.38419 * 305.58909 * 14 13 12 16 16 C 1.53040 * 109.54183 * 61.24036 * 15 14 13 17 17 H 1.08993 * 109.49774 * 58.58532 * 16 15 14 18 18 N 1.46497 * 109.52534 * 178.67017 * 16 15 14 19 19 C 1.36946 * 119.99698 * 204.85383 * 18 16 15 20 20 H 1.07997 * 120.00168 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99973 * 179.97438 * 19 18 16 22 22 N 1.31615 * 120.00115 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99793 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47308 * 89.99799 * 23 21 19 25 25 H 1.48505 * 109.46873 * 209.99901 * 23 21 19 26 26 H 1.48498 * 109.47141 * 329.99652 * 23 21 19 27 27 C 1.46921 * 120.63415 * 184.16684 * 12 10 9 28 28 H 1.09001 * 109.46932 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47301 * 299.99595 * 1 2 3 30 30 H 1.08995 * 109.46761 * 59.99883 * 1 2 3 31 31 H 1.07995 * 120.40071 * 359.97438 * 4 3 2 32 32 H 0.96708 * 113.99645 * 90.00613 * 6 5 4 33 33 H 1.07998 * 119.65983 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.58596 * 353.41569 * 13 12 10 35 35 H 1.09004 * 109.58419 * 113.84592 * 13 12 10 36 36 H 1.08998 * 109.56186 * 185.55154 * 14 13 12 37 37 H 1.09001 * 109.38304 * 65.51728 * 14 13 12 38 38 H 1.09010 * 109.45977 * 301.21984 * 15 14 13 39 39 H 1.08997 * 109.46278 * 181.26323 * 15 14 13 40 40 H 0.96997 * 120.00671 * 24.85058 * 18 16 15 41 41 H 0.96998 * 120.00018 * 179.97438 * 22 21 19 42 42 H 1.09000 * 109.58962 * 246.15879 * 27 12 10 43 43 H 1.09006 * 109.58636 * 6.57809 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3064 2.3834 0.0005 5 6 1.9725 3.6002 0.0011 6 8 1.2577 4.7515 0.0010 7 7 3.2973 3.6548 0.0005 8 6 4.0396 2.5680 0.0000 9 6 3.4500 1.3032 0.0054 10 6 4.2835 0.0883 0.0112 11 8 4.1164 -0.7597 0.8667 12 7 5.2311 -0.0834 -0.9317 13 6 5.5026 0.9690 -1.9204 14 6 5.4087 0.3705 -3.3227 15 6 6.3393 -0.8404 -3.4215 16 6 5.9046 -1.9039 -2.4105 17 1 4.8736 -2.1959 -2.6102 18 7 6.7760 -3.0757 -2.5272 19 6 6.3232 -4.3074 -2.1358 20 1 5.3236 -4.4150 -1.7415 21 6 7.1487 -5.4179 -2.2469 22 7 6.7137 -6.6016 -1.8703 23 14 8.8775 -5.2319 -2.9297 24 1 9.8212 -4.9509 -1.8180 25 1 9.2776 -6.4881 -3.6131 26 1 8.9081 -4.1088 -3.9007 27 6 6.0080 -1.3289 -0.9943 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2270 2.3513 0.0005 32 1 1.0500 5.0855 0.8845 33 1 5.1160 2.6560 -0.0008 34 1 4.7679 1.7674 -1.8154 35 1 6.5045 1.3685 -1.7629 36 1 5.7046 1.1177 -4.0591 37 1 4.3824 0.0572 -3.5144 38 1 7.3621 -0.5310 -3.2059 39 1 6.2902 -1.2550 -4.4283 40 1 7.6737 -2.9792 -2.8818 41 1 7.2904 -7.3776 -1.9483 42 1 7.0519 -1.1206 -0.7598 43 1 5.6066 -2.0462 -0.2784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000219567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:03 Heat of formation + Delta-G solvation = -79.601633 kcal Electronic energy + Delta-G solvation = -27601.747068 eV Core-core repulsion = 23647.379167 eV Total energy + Delta-G solvation = -3954.367901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.30140 -40.84752 -39.84533 -38.73401 -37.84658 -36.32613 -34.07426 -32.95662 -32.80098 -32.01549 -30.27678 -28.60580 -26.88296 -25.69917 -24.79769 -24.15941 -23.12691 -22.07404 -20.67271 -20.28183 -19.55775 -18.89723 -18.41567 -17.99627 -17.36057 -16.92502 -16.67356 -16.31006 -16.20227 -15.78615 -15.74365 -15.49938 -15.40933 -15.07226 -14.85632 -14.38855 -14.10162 -13.93725 -13.86047 -13.70204 -13.29302 -13.00026 -12.94030 -12.62811 -12.57835 -12.53692 -12.09110 -11.95068 -11.87238 -11.80261 -11.39269 -11.31516 -11.09063 -10.65369 -10.24325 -10.03483 -9.82240 -9.27157 -8.04426 -5.40893 -0.46367 0.04319 1.37373 1.42800 1.49121 1.50955 1.90297 1.98434 2.31136 2.47753 2.63272 3.26126 3.33524 3.40613 3.51729 3.67181 3.89216 4.01077 4.03189 4.06694 4.12784 4.26209 4.26798 4.34808 4.35440 4.39596 4.57802 4.59387 4.65269 4.71707 4.85061 4.89427 5.00615 5.11266 5.16715 5.35392 5.42210 5.46476 5.74207 6.00608 6.19105 6.36002 6.51189 6.74150 7.03955 7.07811 7.76845 7.99936 9.17485 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020991 B = 0.003279 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.601565 B = 8536.796959 C = 9266.379512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.325 6.325 3 C 0.216 3.784 4 C -0.272 4.272 5 C 0.368 3.632 6 O -0.482 6.482 7 N -0.537 5.537 8 C 0.205 3.795 9 C -0.242 4.242 10 C 0.565 3.435 11 O -0.580 6.580 12 N -0.596 5.596 13 C 0.095 3.905 14 C -0.123 4.123 15 C -0.120 4.120 16 C 0.170 3.830 17 H 0.026 0.974 18 N -0.742 5.742 19 C -0.238 4.238 20 H 0.043 0.957 21 C -0.065 4.065 22 N -0.986 5.986 23 Si 0.964 3.036 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.242 1.242 27 C 0.107 3.893 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.179 0.821 32 H 0.429 0.571 33 H 0.197 0.803 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.372 0.628 41 H 0.259 0.741 42 H 0.077 0.923 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 28.151 0.347 29.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.160 3.840 4 C -0.294 4.294 5 C 0.191 3.809 6 O -0.293 6.293 7 N -0.259 5.259 8 C 0.047 3.953 9 C -0.248 4.248 10 C 0.353 3.647 11 O -0.460 6.460 12 N -0.329 5.329 13 C -0.026 4.026 14 C -0.161 4.161 15 C -0.158 4.158 16 C 0.061 3.939 17 H 0.044 0.956 18 N -0.386 5.386 19 C -0.369 4.369 20 H 0.061 0.939 21 C -0.256 4.256 22 N -0.636 5.636 23 Si 0.790 3.210 24 H -0.203 1.203 25 H -0.223 1.223 26 H -0.166 1.166 27 C -0.019 4.019 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.196 0.804 32 H 0.292 0.708 33 H 0.213 0.787 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.206 0.794 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.740 28.106 0.267 29.747 hybrid contribution -0.009 -1.799 0.531 1.876 sum -9.749 26.307 0.797 28.067 Atomic orbital electron populations 1.23573 0.74923 1.06113 1.03591 1.86222 1.24876 1.26281 1.86081 1.19300 0.90672 0.85556 0.88457 1.22226 1.03380 0.90256 1.13551 1.19099 0.86442 0.85654 0.89673 1.84661 1.70716 1.37677 1.36287 1.67338 1.07141 1.32641 1.18796 1.22881 1.00886 0.83315 0.88251 1.20301 0.91791 0.95738 1.17019 1.18232 0.79556 0.85805 0.81077 1.90798 1.69903 1.46183 1.39137 1.48182 1.36111 1.18023 1.30534 1.22231 1.03907 0.89229 0.87226 1.21796 0.99536 0.97685 0.97100 1.21790 1.00731 0.94717 0.98555 1.20618 0.93437 0.86766 0.93120 0.95612 1.42618 1.15208 1.03594 1.77140 1.18949 0.98357 0.85515 1.34105 0.93937 1.25635 1.03308 0.94585 1.02100 1.69918 1.38634 0.99694 1.55326 0.85286 0.79231 0.77651 0.78823 1.20294 1.22263 1.16591 1.22237 0.95230 0.84684 0.99700 0.87024 0.89986 0.90017 0.80365 0.70797 0.78680 0.88318 0.87709 0.86631 0.92884 0.89824 0.91302 0.79403 0.93227 0.90468 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.84 113.37 1.12 1.29 16 2 O -0.32 -8.87 9.83 -87.69 -0.86 -9.73 16 3 C 0.22 5.22 6.73 23.06 0.16 5.37 16 4 C -0.27 -4.53 9.02 22.52 0.20 -4.32 16 5 C 0.37 6.15 7.73 84.69 0.65 6.80 16 6 O -0.48 -5.67 13.54 -88.17 -1.19 -6.86 16 7 N -0.54 -10.29 10.36 -307.95 -3.19 -13.49 16 8 C 0.20 3.98 8.60 85.04 0.73 4.71 16 9 C -0.24 -6.29 4.90 -19.92 -0.10 -6.38 16 10 C 0.57 19.47 6.90 86.64 0.60 20.07 16 11 O -0.58 -26.34 16.27 -3.52 -0.06 -26.40 16 12 N -0.60 -18.15 2.98 -823.68 -2.45 -20.60 16 13 C 0.10 1.84 5.50 86.22 0.47 2.31 16 14 C -0.12 -2.43 6.06 30.53 0.19 -2.25 16 15 C -0.12 -3.19 5.36 30.62 0.16 -3.03 16 16 C 0.17 6.62 2.92 45.07 0.13 6.75 16 17 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 18 N -0.74 -35.00 4.93 -322.57 -1.59 -36.59 16 19 C -0.24 -14.17 10.41 84.03 0.88 -13.30 16 20 H 0.04 2.88 8.06 -2.91 -0.02 2.85 16 21 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 22 N -0.99 -65.29 13.97 21.65 0.30 -64.99 16 23 Si 0.96 45.56 27.74 68.60 1.90 47.46 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.24 -9.95 6.52 99.48 0.65 -9.30 16 27 C 0.11 4.06 6.01 86.36 0.52 4.58 16 28 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 0.86 7.71 -2.39 -0.02 0.84 16 30 H 0.08 0.87 7.71 -2.39 -0.02 0.85 16 31 H 0.18 1.83 6.45 -2.91 -0.02 1.81 16 32 H 0.43 0.56 9.06 -74.05 -0.67 -0.12 16 33 H 0.20 2.74 7.36 -2.91 -0.02 2.72 16 34 H 0.10 1.62 4.74 -2.39 -0.01 1.60 16 35 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.37 16.13 5.66 -92.71 -0.52 15.61 16 41 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 42 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.04 2.13 7.03 -2.38 -0.02 2.11 16 Total: -1.00 -88.79 352.98 -1.16 -89.95 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.19 Total: 22.11 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 6.18 Total: 19.14 kcal Atomic # 7 Polarization: -128.74 SS G_CDS: -6.93 Total: -135.67 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -2.11 Total: -42.99 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Total: -88.79 -1.16 -89.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000219567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.346 kcal (2) G-P(sol) polarization free energy of solvation -88.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds