Wall clock time and date at job start Tue Mar 31 2020 13:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35500 * 117.00443 * 2 1 4 4 C 1.39216 * 120.89781 * 359.97438 * 3 2 1 5 5 C 1.37900 * 119.38967 * 180.02562 * 4 3 2 6 6 N 1.32076 * 121.29314 * 0.02562 * 5 4 3 7 7 C 1.32182 * 121.97655 * 359.70401 * 6 5 4 8 8 O 1.35435 * 119.77925 * 180.29623 * 7 6 5 9 9 C 1.40297 * 120.44561 * 0.57822 * 7 6 5 10 10 C 1.47230 * 120.65421 * 179.70848 * 9 7 6 11 11 O 1.21622 * 119.99962 * 269.72999 * 10 9 7 12 12 N 1.34778 * 119.99903 * 89.72699 * 10 9 7 13 13 C 1.46926 * 120.62905 * 0.02562 * 12 10 9 14 14 C 1.53189 * 108.77362 * 126.41702 * 13 12 10 15 15 C 1.53031 * 109.31736 * 54.63287 * 14 13 12 16 16 C 1.53043 * 109.53674 * 298.63690 * 15 14 13 17 17 H 1.09001 * 109.49411 * 301.38073 * 16 15 14 18 18 N 1.46506 * 109.49856 * 181.31895 * 16 15 14 19 19 C 1.36931 * 119.99939 * 154.99840 * 18 16 15 20 20 H 1.08000 * 120.00644 * 359.97438 * 19 18 16 21 21 C 1.38815 * 119.99715 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99673 * 179.72262 * 21 19 18 23 23 Si 1.86795 * 120.00115 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47274 * 89.99913 * 23 21 19 25 25 H 1.48505 * 109.47015 * 209.99478 * 23 21 19 26 26 H 1.48498 * 109.47362 * 329.99904 * 23 21 19 27 27 C 1.46925 * 120.63134 * 180.02562 * 12 10 9 28 28 H 1.08997 * 109.46951 * 59.99332 * 1 2 3 29 29 H 1.08994 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46851 * 299.99954 * 1 2 3 31 31 H 1.07998 * 120.30474 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.35126 * 180.02562 * 5 4 3 33 33 H 0.96704 * 113.99362 * 270.28390 * 8 7 6 34 34 H 1.08995 * 109.58663 * 6.62222 * 13 12 10 35 35 H 1.09003 * 109.58394 * 246.19633 * 13 12 10 36 36 H 1.09001 * 109.49412 * 294.67522 * 14 13 12 37 37 H 1.09007 * 109.49506 * 174.58545 * 14 13 12 38 38 H 1.09001 * 109.46530 * 178.61720 * 15 14 13 39 39 H 1.09002 * 109.45153 * 58.64935 * 15 14 13 40 40 H 0.97000 * 119.99307 * 334.99635 * 18 16 15 41 41 H 0.97000 * 120.00043 * 180.02562 * 22 21 19 42 42 H 1.09000 * 109.58788 * 113.79458 * 27 12 10 43 43 H 1.09000 * 109.58602 * 353.37409 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2073 0.0000 4 6 1.3046 2.3866 -0.0005 5 6 1.9628 3.5984 -0.0011 6 7 3.2820 3.6624 -0.0016 7 6 4.0356 2.5765 0.0042 8 8 5.3848 2.6940 0.0095 9 6 3.4472 1.3029 -0.0011 10 6 4.2822 0.0902 -0.0011 11 8 4.6267 -0.4108 -1.0545 12 7 4.6648 -0.4646 1.1660 13 6 4.2561 0.1289 2.4465 14 6 3.5838 -0.9521 3.2986 15 6 4.5269 -2.1497 3.4335 16 6 4.8126 -2.7347 2.0485 17 1 3.8754 -3.0365 1.5807 18 7 5.6902 -3.9002 2.1815 19 6 5.6840 -4.8752 1.2200 20 1 5.0318 -4.7853 0.3639 21 6 6.5160 -5.9793 1.3458 22 7 6.5060 -6.9191 0.4244 23 14 7.6435 -6.1352 2.8269 24 1 6.9350 -6.8564 3.9147 25 1 8.8625 -6.8918 2.4435 26 1 8.0294 -4.7815 3.3000 27 6 5.4985 -1.6743 1.1822 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2251 2.3528 -0.0014 32 1 1.3883 4.5129 -0.0010 33 1 5.7798 2.7304 -0.8725 34 1 3.5525 0.9412 2.2647 35 1 5.1332 0.5123 2.9680 36 1 2.6582 -1.2701 2.8189 37 1 3.3622 -0.5503 4.2874 38 1 4.0608 -2.9103 4.0599 39 1 5.4619 -1.8257 3.8908 40 1 6.2757 -3.9811 2.9506 41 1 7.0871 -7.6908 0.5125 42 1 6.4770 -1.4382 1.6003 43 1 5.6145 -2.0517 0.1662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000706408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:07 Heat of formation + Delta-G solvation = -48.704223 kcal Electronic energy + Delta-G solvation = -28090.071823 eV Core-core repulsion = 24137.043735 eV Total energy + Delta-G solvation = -3953.028089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37812 -39.52541 -39.04498 -37.30112 -36.98162 -34.58599 -32.52222 -31.91069 -31.29690 -30.82339 -28.75664 -27.86138 -25.78581 -24.15904 -23.62231 -23.12326 -21.71364 -20.64276 -19.57416 -19.12790 -17.92137 -17.62689 -17.51819 -17.07767 -16.42015 -15.88457 -15.53377 -15.11051 -14.83341 -14.75291 -14.52208 -14.25015 -13.96493 -13.72796 -13.40181 -13.13505 -12.97734 -12.61930 -12.54646 -12.37345 -12.08740 -11.96043 -11.82139 -11.62619 -11.19138 -10.90951 -10.70861 -10.62768 -10.32172 -10.24568 -9.87973 -9.61730 -9.55317 -9.36354 -9.15398 -9.07748 -8.35948 -7.27756 -5.75544 -3.12743 0.46820 0.85660 2.57968 2.68316 3.07811 3.18595 3.38137 3.40479 3.46199 3.54403 4.15251 4.42294 4.53355 4.59507 4.60665 4.75288 4.76994 4.84399 5.03243 5.05077 5.14199 5.21263 5.27397 5.39914 5.48063 5.52735 5.57047 5.73013 5.83109 5.87076 5.94031 6.06205 6.10144 6.27381 6.40373 6.68049 6.73443 6.76732 6.93468 7.16094 7.53038 7.62815 8.00675 8.33123 8.43455 9.20488 9.92088 10.10887 11.42546 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.003575 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.307085 B = 7831.008804 C = 8089.400875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.294 6.294 3 C 0.214 3.786 4 C -0.275 4.275 5 C 0.169 3.831 6 N -0.524 5.524 7 C 0.379 3.621 8 O -0.472 6.472 9 C -0.219 4.219 10 C 0.579 3.421 11 O -0.530 6.530 12 N -0.591 5.591 13 C 0.113 3.887 14 C -0.128 4.128 15 C -0.129 4.129 16 C 0.174 3.826 17 H 0.060 0.940 18 N -0.742 5.742 19 C -0.247 4.247 20 H 0.092 0.908 21 C 0.007 3.993 22 N -0.931 5.931 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.094 3.906 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.149 0.851 32 H 0.167 0.833 33 H 0.410 0.590 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.062 0.938 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.542 22.820 3.345 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.204 6.204 3 C 0.159 3.841 4 C -0.296 4.296 5 C 0.013 3.987 6 N -0.247 5.247 7 C 0.200 3.800 8 O -0.280 6.280 9 C -0.227 4.227 10 C 0.364 3.636 11 O -0.407 6.407 12 N -0.323 5.323 13 C -0.010 4.010 14 C -0.167 4.167 15 C -0.167 4.167 16 C 0.063 3.937 17 H 0.078 0.922 18 N -0.384 5.384 19 C -0.377 4.377 20 H 0.110 0.890 21 C -0.189 4.189 22 N -0.579 5.579 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.030 4.030 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.080 0.920 31 H 0.166 0.834 32 H 0.184 0.816 33 H 0.270 0.730 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.914 22.867 3.172 26.453 hybrid contribution 0.309 -0.817 0.561 1.038 sum -12.604 22.050 3.733 25.671 Atomic orbital electron populations 1.23263 0.76955 1.05158 1.01709 1.86171 1.22436 1.25409 1.86335 1.19113 0.90295 0.85380 0.89294 1.22172 1.01960 0.92573 1.12931 1.22386 0.88645 0.97268 0.90394 1.67302 1.07270 1.32123 1.17961 1.18791 0.84799 0.85407 0.91006 1.84671 1.13695 1.95073 1.34563 1.20392 0.91933 0.95817 1.14575 1.17507 0.79427 0.82535 0.84127 1.90832 1.56231 1.62773 1.30835 1.48100 1.51147 1.28127 1.04934 1.21638 0.99306 0.95566 0.84490 1.21864 0.99348 0.96023 0.99463 1.21861 0.99200 0.96992 0.98678 1.20451 0.94052 0.86507 0.92691 0.92151 1.42733 1.47965 1.21319 1.26403 1.19110 1.19913 0.97314 1.01340 0.89046 1.24678 0.99545 0.96838 0.97835 1.69708 1.42175 1.11215 1.34767 0.86554 0.81104 0.77436 0.83453 1.21090 1.21715 1.20285 1.22724 0.93009 0.83160 1.04152 0.91989 0.87259 0.91968 0.83367 0.81557 0.72988 0.91140 0.91266 0.91367 0.91020 0.91277 0.92090 0.80464 0.93024 0.91960 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.84 101.05 0.99 1.16 16 2 O -0.29 -3.58 10.03 -18.19 -0.18 -3.76 16 3 C 0.21 2.53 6.60 -38.32 -0.25 2.27 16 4 C -0.28 -2.24 9.09 -39.34 -0.36 -2.60 16 5 C 0.17 1.39 11.15 -17.57 -0.20 1.20 16 6 N -0.52 -5.96 10.37 -13.06 -0.14 -6.10 16 7 C 0.38 4.83 7.77 -16.63 -0.13 4.71 16 8 O -0.47 -5.73 13.02 -18.00 -0.23 -5.96 16 9 C -0.22 -3.07 3.66 -104.57 -0.38 -3.46 16 10 C 0.58 10.15 6.30 -12.61 -0.08 10.07 16 11 O -0.53 -11.40 16.52 5.26 0.09 -11.31 16 12 N -0.59 -9.79 2.97 -174.14 -0.52 -10.30 16 13 C 0.11 1.48 6.34 -3.71 -0.02 1.45 16 14 C -0.13 -1.58 6.08 -26.62 -0.16 -1.74 16 15 C -0.13 -1.96 5.35 -26.69 -0.14 -2.10 16 16 C 0.17 3.41 2.92 -67.83 -0.20 3.22 16 17 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 18 N -0.74 -17.61 4.93 -53.33 -0.26 -17.87 16 19 C -0.25 -7.06 10.41 -15.06 -0.16 -7.21 16 20 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 21 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 22 N -0.93 -29.61 13.97 55.49 0.78 -28.83 16 23 Si 0.88 22.15 27.74 -169.99 -4.71 17.43 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 27 C 0.09 1.81 6.01 -3.73 -0.02 1.79 16 28 H 0.06 0.32 7.70 -51.93 -0.40 -0.08 16 29 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 31 H 0.15 0.70 6.45 -52.49 -0.34 0.37 16 32 H 0.17 0.74 8.06 -52.48 -0.42 0.31 16 33 H 0.41 3.37 9.06 45.56 0.41 3.79 16 34 H 0.07 0.85 6.23 -51.93 -0.32 0.53 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.36 8.34 5.66 -40.82 -0.23 8.11 16 41 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.10 2.19 7.00 -51.93 -0.36 1.83 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -37.41 356.62 -6.05 -43.46 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.04 Total: 9.02 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -1.21 Total: 8.86 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.14 Total: -63.11 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.33 Total: -21.04 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.41 -6.05 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000706408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.243 kcal (2) G-P(sol) polarization free energy of solvation -37.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds