Wall clock time and date at job start Tue Mar 31 2020 13:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35504 * 116.99648 * 2 1 4 4 C 1.39210 * 120.90412 * 0.02562 * 3 2 1 5 5 C 1.37904 * 119.39229 * 180.02562 * 4 3 2 6 6 N 1.32074 * 121.29193 * 359.97438 * 5 4 3 7 7 C 1.32181 * 121.98136 * 0.02562 * 6 5 4 8 8 O 1.35422 * 119.78028 * 179.97438 * 7 6 5 9 9 C 1.40297 * 120.44072 * 0.27072 * 7 6 5 10 10 C 1.47236 * 120.65012 * 179.70737 * 9 7 6 11 11 O 1.21623 * 120.00222 * 89.99894 * 10 9 7 12 12 N 1.34775 * 119.99708 * 269.99556 * 10 9 7 13 13 C 1.46922 * 120.63350 * 359.72373 * 12 10 9 14 14 C 1.52764 * 109.00918 * 233.58434 * 13 12 10 15 15 C 1.53035 * 109.38335 * 305.58705 * 14 13 12 16 16 C 1.53046 * 109.53895 * 61.23491 * 15 14 13 17 17 H 1.09007 * 109.49147 * 58.58982 * 16 15 14 18 18 N 1.46504 * 109.52429 * 178.66776 * 16 15 14 19 19 C 1.36933 * 119.99898 * 204.85958 * 18 16 15 20 20 H 1.08009 * 120.00212 * 359.97438 * 19 18 16 21 21 C 1.38815 * 120.00115 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99945 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00339 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47136 * 59.99306 * 23 21 19 25 25 H 1.48495 * 109.47440 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47117 * 299.99824 * 23 21 19 27 27 C 1.46923 * 120.62858 * 180.02562 * 12 10 9 28 28 H 1.08993 * 109.47108 * 299.99866 * 1 2 3 29 29 H 1.08998 * 109.46992 * 59.99748 * 1 2 3 30 30 H 1.08999 * 109.46416 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.30335 * 0.04625 * 4 3 2 32 32 H 1.08003 * 119.35262 * 180.02562 * 5 4 3 33 33 H 0.96700 * 114.00112 * 89.99964 * 8 7 6 34 34 H 1.09001 * 109.58394 * 353.41287 * 13 12 10 35 35 H 1.08994 * 109.58755 * 113.84398 * 13 12 10 36 36 H 1.08995 * 109.56485 * 185.55047 * 14 13 12 37 37 H 1.09006 * 109.38794 * 65.51087 * 14 13 12 38 38 H 1.09008 * 109.46222 * 301.22175 * 15 14 13 39 39 H 1.09002 * 109.46787 * 181.26081 * 15 14 13 40 40 H 0.96997 * 119.99998 * 24.85646 * 18 16 15 41 41 H 0.96990 * 120.00227 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.58790 * 246.15433 * 27 12 10 43 43 H 1.09003 * 109.58972 * 6.57915 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3044 2.3867 0.0005 5 6 1.9626 3.5985 0.0000 6 7 3.2817 3.6626 -0.0005 7 6 4.0355 2.5768 -0.0011 8 8 5.3846 2.6944 -0.0021 9 6 3.4471 1.3031 -0.0068 10 6 4.2823 0.0906 -0.0139 11 8 4.6284 -0.4156 1.0365 12 7 4.6630 -0.4585 -1.1843 13 6 4.2477 0.1378 -2.4612 14 6 3.5777 -0.9356 -3.3171 15 6 4.5197 -2.1332 -3.4593 16 6 4.8077 -2.7247 -2.0774 17 1 3.8711 -3.0276 -1.6091 18 7 5.6841 -3.8904 -2.2168 19 6 5.6807 -4.8680 -1.2580 20 1 5.0323 -4.7795 -0.3987 21 6 6.5115 -5.9723 -1.3898 22 7 7.3020 -6.0800 -2.4366 23 14 6.5065 -7.3063 -0.0822 24 1 5.1456 -7.8915 0.0228 25 1 7.4743 -8.3689 -0.4553 26 1 6.8949 -6.7192 1.2255 27 6 5.4958 -1.6687 -1.2076 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2249 2.3528 0.0017 32 1 1.3880 4.5130 0.0008 33 1 5.7771 2.7287 0.8810 34 1 3.5420 0.9472 -2.2741 35 1 5.1215 0.5258 -2.9847 36 1 3.3545 -0.5292 -4.3035 37 1 2.6525 -1.2554 -2.8375 38 1 5.4541 -1.8079 -3.9168 39 1 4.0520 -2.8906 -4.0883 40 1 6.2666 -3.9698 -2.9883 41 1 7.8822 -6.8517 -2.5289 42 1 6.4737 -1.4313 -1.6265 43 1 5.6135 -2.0509 -0.1935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000706410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:10 Heat of formation + Delta-G solvation = -53.192736 kcal Electronic energy + Delta-G solvation = -28050.198815 eV Core-core repulsion = 24096.976090 eV Total energy + Delta-G solvation = -3953.222725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.36017 -39.47993 -39.03030 -37.22284 -36.95855 -34.43795 -32.50295 -31.86962 -31.15254 -30.77567 -28.28120 -27.82929 -25.73383 -24.11729 -23.74578 -23.11230 -21.84128 -20.57307 -19.51617 -19.03094 -17.90166 -17.59443 -17.07156 -17.04579 -16.40954 -15.86114 -15.52258 -15.09293 -14.85773 -14.73252 -14.39699 -14.10140 -13.94312 -13.48277 -13.43741 -13.31596 -12.96246 -12.62242 -12.36900 -12.22426 -12.06668 -11.95036 -11.81255 -11.32625 -11.00853 -10.80150 -10.63716 -10.54238 -10.26942 -10.20550 -9.80826 -9.69778 -9.54419 -9.34960 -9.13220 -9.03372 -8.29421 -6.97237 -5.76023 -3.05652 0.48377 0.86926 2.58765 2.70905 3.10164 3.21863 3.47555 3.51299 3.53243 3.56541 4.16771 4.43972 4.55185 4.60790 4.61748 4.75659 4.76539 4.96681 5.05992 5.12298 5.15457 5.29005 5.30864 5.51332 5.53625 5.62070 5.68557 5.83179 5.87684 5.96376 6.09873 6.20531 6.24984 6.39356 6.52353 6.74200 6.78352 6.86366 7.04834 7.17900 7.54910 7.67876 7.74020 8.36056 8.42691 9.53941 10.08079 10.43758 11.46260 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.003516 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.167166 B = 7961.714133 C = 8117.181377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.294 6.294 3 C 0.214 3.786 4 C -0.276 4.276 5 C 0.169 3.831 6 N -0.524 5.524 7 C 0.380 3.620 8 O -0.471 6.471 9 C -0.219 4.219 10 C 0.578 3.422 11 O -0.534 6.534 12 N -0.589 5.589 13 C 0.114 3.886 14 C -0.129 4.129 15 C -0.125 4.125 16 C 0.169 3.831 17 H 0.051 0.949 18 N -0.718 5.718 19 C -0.242 4.242 20 H 0.071 0.929 21 C -0.010 4.010 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.093 3.907 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.410 0.590 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.063 0.937 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.166 20.706 1.132 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.204 6.204 3 C 0.159 3.841 4 C -0.297 4.297 5 C 0.013 3.987 6 N -0.247 5.247 7 C 0.200 3.800 8 O -0.279 6.279 9 C -0.227 4.227 10 C 0.363 3.637 11 O -0.411 6.411 12 N -0.321 5.321 13 C -0.009 4.009 14 C -0.168 4.168 15 C -0.164 4.164 16 C 0.058 3.942 17 H 0.069 0.931 18 N -0.358 5.358 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.206 4.206 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.211 1.211 27 C -0.031 4.031 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.166 0.834 32 H 0.184 0.816 33 H 0.270 0.730 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.500 20.780 1.218 25.368 hybrid contribution -0.331 -1.363 0.880 1.656 sum -14.831 19.418 2.098 24.524 Atomic orbital electron populations 1.23255 0.77007 1.05099 1.01717 1.86168 1.22395 1.25447 1.86383 1.19110 0.90298 0.85350 0.89364 1.22166 1.01935 0.92581 1.12985 1.22384 0.88648 0.97255 0.90429 1.67296 1.07257 1.32134 1.17965 1.18785 0.84797 0.85403 0.90993 1.84670 1.13712 1.95070 1.34490 1.20398 0.91937 0.95861 1.14486 1.17506 0.79448 0.82558 0.84140 1.90814 1.56440 1.62689 1.31204 1.48141 1.50883 1.28215 1.04861 1.21544 0.99262 0.95538 0.84597 1.21802 0.99352 0.96275 0.99328 1.21820 0.99117 0.96663 0.98761 1.20477 0.93964 0.87190 0.92572 0.93093 1.42366 1.47584 1.19178 1.26692 1.19237 1.18870 0.98297 1.00946 0.91099 1.24736 0.99085 0.98768 0.98038 1.69649 1.28317 1.30854 1.29271 0.86268 0.77180 0.81529 0.81245 1.21240 1.21685 1.21103 1.22820 0.93263 0.83145 1.03859 0.92021 0.91946 0.87318 0.83393 0.81563 0.73001 0.91288 0.91255 0.91072 0.91622 0.91968 0.91378 0.78053 0.93426 0.91820 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.84 101.05 0.99 1.16 16 2 O -0.29 -3.61 10.03 -18.21 -0.18 -3.79 16 3 C 0.21 2.55 6.60 -38.32 -0.25 2.30 16 4 C -0.28 -2.28 9.09 -39.34 -0.36 -2.64 16 5 C 0.17 1.42 11.15 -17.57 -0.20 1.22 16 6 N -0.52 -6.06 10.37 -13.06 -0.14 -6.20 16 7 C 0.38 4.93 7.77 -16.63 -0.13 4.80 16 8 O -0.47 -5.85 13.01 -17.96 -0.23 -6.09 16 9 C -0.22 -3.12 3.66 -104.57 -0.38 -3.50 16 10 C 0.58 10.28 6.30 -12.61 -0.08 10.20 16 11 O -0.53 -11.51 16.52 5.26 0.09 -11.42 16 12 N -0.59 -10.04 2.98 -174.40 -0.52 -10.56 16 13 C 0.11 1.56 6.31 -3.93 -0.02 1.53 16 14 C -0.13 -1.69 6.06 -26.83 -0.16 -1.85 16 15 C -0.13 -2.05 5.36 -26.69 -0.14 -2.19 16 16 C 0.17 3.47 2.92 -67.83 -0.20 3.28 16 17 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 18 N -0.72 -18.14 5.13 -53.32 -0.27 -18.42 16 19 C -0.24 -6.86 9.93 -15.06 -0.15 -7.01 16 20 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 23 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 27 C 0.09 1.86 6.01 -3.74 -0.02 1.84 16 28 H 0.06 0.32 7.70 -51.93 -0.40 -0.08 16 29 H 0.06 0.30 7.71 -51.93 -0.40 -0.10 16 30 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.15 0.72 6.45 -52.49 -0.34 0.38 16 32 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.41 3.45 9.06 45.56 0.41 3.86 16 34 H 0.07 0.87 6.23 -51.93 -0.32 0.55 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.39 10.21 7.80 -40.82 -0.32 9.89 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.09 2.11 7.00 -51.93 -0.36 1.75 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -36.26 359.71 -6.42 -42.67 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.08 Total: 9.34 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -1.20 Total: 8.75 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.20 Total: -62.72 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.33 Total: -21.30 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.26 -6.42 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000706410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.521 kcal (2) G-P(sol) polarization free energy of solvation -36.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds