Wall clock time and date at job start Tue Mar 31 2020 13:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35504 * 116.99648 * 2 1 4 4 C 1.39210 * 120.90412 * 0.02562 * 3 2 1 5 5 C 1.37904 * 119.39229 * 180.02562 * 4 3 2 6 6 N 1.32074 * 121.29193 * 359.97438 * 5 4 3 7 7 C 1.32181 * 121.98136 * 0.02562 * 6 5 4 8 8 O 1.35422 * 119.78028 * 179.97438 * 7 6 5 9 9 C 1.40297 * 120.44072 * 0.27072 * 7 6 5 10 10 C 1.47236 * 120.65012 * 179.70737 * 9 7 6 11 11 O 1.21623 * 120.00222 * 89.99894 * 10 9 7 12 12 N 1.34775 * 119.99708 * 269.99556 * 10 9 7 13 13 C 1.46922 * 120.63350 * 359.72373 * 12 10 9 14 14 C 1.52764 * 109.00918 * 233.58434 * 13 12 10 15 15 C 1.53035 * 109.38335 * 305.58705 * 14 13 12 16 16 C 1.53046 * 109.53895 * 61.23491 * 15 14 13 17 17 H 1.09007 * 109.49147 * 58.58982 * 16 15 14 18 18 N 1.46504 * 109.52429 * 178.66776 * 16 15 14 19 19 C 1.36933 * 119.99898 * 204.85958 * 18 16 15 20 20 H 1.08009 * 120.00212 * 359.97438 * 19 18 16 21 21 C 1.38815 * 120.00115 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99945 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00339 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47136 * 59.99306 * 23 21 19 25 25 H 1.48495 * 109.47440 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47117 * 299.99824 * 23 21 19 27 27 C 1.46923 * 120.62858 * 180.02562 * 12 10 9 28 28 H 1.08993 * 109.47108 * 299.99866 * 1 2 3 29 29 H 1.08998 * 109.46992 * 59.99748 * 1 2 3 30 30 H 1.08999 * 109.46416 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.30335 * 0.04625 * 4 3 2 32 32 H 1.08003 * 119.35262 * 180.02562 * 5 4 3 33 33 H 0.96700 * 114.00112 * 89.99964 * 8 7 6 34 34 H 1.09001 * 109.58394 * 353.41287 * 13 12 10 35 35 H 1.08994 * 109.58755 * 113.84398 * 13 12 10 36 36 H 1.08995 * 109.56485 * 185.55047 * 14 13 12 37 37 H 1.09006 * 109.38794 * 65.51087 * 14 13 12 38 38 H 1.09008 * 109.46222 * 301.22175 * 15 14 13 39 39 H 1.09002 * 109.46787 * 181.26081 * 15 14 13 40 40 H 0.96997 * 119.99998 * 24.85646 * 18 16 15 41 41 H 0.96990 * 120.00227 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.58790 * 246.15433 * 27 12 10 43 43 H 1.09003 * 109.58972 * 6.57915 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3044 2.3867 0.0005 5 6 1.9626 3.5985 0.0000 6 7 3.2817 3.6626 -0.0005 7 6 4.0355 2.5768 -0.0011 8 8 5.3846 2.6944 -0.0021 9 6 3.4471 1.3031 -0.0068 10 6 4.2823 0.0906 -0.0139 11 8 4.6284 -0.4156 1.0365 12 7 4.6630 -0.4585 -1.1843 13 6 4.2477 0.1378 -2.4612 14 6 3.5777 -0.9356 -3.3171 15 6 4.5197 -2.1332 -3.4593 16 6 4.8077 -2.7247 -2.0774 17 1 3.8711 -3.0276 -1.6091 18 7 5.6841 -3.8904 -2.2168 19 6 5.6807 -4.8680 -1.2580 20 1 5.0323 -4.7795 -0.3987 21 6 6.5115 -5.9723 -1.3898 22 7 7.3020 -6.0800 -2.4366 23 14 6.5065 -7.3063 -0.0822 24 1 5.1456 -7.8915 0.0228 25 1 7.4743 -8.3689 -0.4553 26 1 6.8949 -6.7192 1.2255 27 6 5.4958 -1.6687 -1.2076 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2249 2.3528 0.0017 32 1 1.3880 4.5130 0.0008 33 1 5.7771 2.7287 0.8810 34 1 3.5420 0.9472 -2.2741 35 1 5.1215 0.5258 -2.9847 36 1 3.3545 -0.5292 -4.3035 37 1 2.6525 -1.2554 -2.8375 38 1 5.4541 -1.8079 -3.9168 39 1 4.0520 -2.8906 -4.0883 40 1 6.2666 -3.9698 -2.9883 41 1 7.8822 -6.8517 -2.5289 42 1 6.4737 -1.4313 -1.6265 43 1 5.6135 -2.0509 -0.1935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000706410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:09 Heat of formation + Delta-G solvation = -84.042614 kcal Electronic energy + Delta-G solvation = -28051.536566 eV Core-core repulsion = 24096.976090 eV Total energy + Delta-G solvation = -3954.560476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.28643 -40.73620 -39.86704 -38.68377 -37.83265 -36.25073 -34.06402 -32.91039 -32.80046 -31.62029 -29.99617 -28.46046 -26.98262 -25.91290 -24.96900 -23.90692 -23.32017 -21.98299 -20.61245 -20.12816 -19.16311 -18.81809 -18.55171 -18.10310 -17.47929 -16.91088 -16.68381 -16.36023 -15.96685 -15.85025 -15.61467 -15.50089 -15.41129 -15.10526 -14.87851 -14.18321 -14.10281 -13.95771 -13.77399 -13.59068 -13.13223 -12.93181 -12.90000 -12.56761 -12.54268 -12.46216 -12.26994 -12.07618 -11.95880 -11.73312 -11.41718 -11.38871 -11.09710 -10.58683 -10.11401 -10.03235 -9.82330 -9.04807 -7.99540 -5.29277 -0.32216 0.06770 1.38337 1.43403 1.46648 1.52766 1.87592 1.89930 2.40282 2.52637 2.73609 3.26667 3.33348 3.67235 3.68545 3.76496 3.88916 3.96179 3.99814 4.12402 4.26881 4.28554 4.31008 4.35152 4.36872 4.49534 4.51644 4.66870 4.73260 4.81144 4.83269 4.85913 4.99226 5.05754 5.24761 5.32801 5.38968 5.40194 5.51948 6.06798 6.22640 6.32078 6.39133 6.78653 6.99886 7.29479 8.00411 8.27091 9.22922 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.003516 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.167166 B = 7961.714133 C = 8117.181377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.330 6.330 3 C 0.206 3.794 4 C -0.256 4.256 5 C 0.177 3.823 6 N -0.538 5.538 7 C 0.375 3.625 8 O -0.487 6.487 9 C -0.249 4.249 10 C 0.577 3.423 11 O -0.588 6.588 12 N -0.589 5.589 13 C 0.112 3.888 14 C -0.117 4.117 15 C -0.116 4.116 16 C 0.170 3.830 17 H 0.031 0.969 18 N -0.728 5.728 19 C -0.249 4.249 20 H 0.064 0.936 21 C -0.065 4.065 22 N -0.963 5.963 23 Si 0.969 3.031 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.284 1.284 27 C 0.108 3.892 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.190 0.810 32 H 0.213 0.787 33 H 0.422 0.578 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.378 0.622 41 H 0.254 0.746 42 H 0.060 0.940 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.038 23.122 0.413 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.151 3.849 4 C -0.276 4.276 5 C 0.022 3.978 6 N -0.261 5.261 7 C 0.196 3.804 8 O -0.297 6.297 9 C -0.257 4.257 10 C 0.365 3.635 11 O -0.469 6.469 12 N -0.320 5.320 13 C -0.010 4.010 14 C -0.155 4.155 15 C -0.155 4.155 16 C 0.061 3.939 17 H 0.050 0.950 18 N -0.368 5.368 19 C -0.380 4.380 20 H 0.082 0.918 21 C -0.258 4.258 22 N -0.613 5.613 23 Si 0.797 3.203 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.210 1.210 27 C -0.018 4.018 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.129 0.871 31 H 0.207 0.793 32 H 0.229 0.771 33 H 0.284 0.716 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.211 0.789 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.424 23.249 0.487 29.058 hybrid contribution 0.443 -2.012 1.130 2.350 sum -16.981 21.237 1.617 27.240 Atomic orbital electron populations 1.23598 0.74424 1.06125 1.03917 1.86129 1.25229 1.26275 1.86400 1.19316 0.89606 0.86570 0.89410 1.22557 1.03686 0.90789 1.10603 1.23226 0.87720 0.99082 0.87733 1.67417 1.08816 1.31164 1.18737 1.18815 0.84902 0.85396 0.91313 1.84609 1.14223 1.95099 1.35799 1.20183 0.92804 0.94277 1.18395 1.18125 0.78905 0.83258 0.83247 1.90765 1.58482 1.64595 1.33020 1.48175 1.50239 1.27110 1.06474 1.21791 1.00234 0.96066 0.82902 1.21764 0.97974 0.94464 1.01315 1.21725 1.00365 0.97896 0.95486 1.20594 0.92026 0.86016 0.95314 0.95048 1.42481 1.48233 1.20235 1.25831 1.19480 1.18332 0.99066 1.01169 0.91788 1.25483 0.99181 1.00967 1.00184 1.69782 1.29187 1.31433 1.30910 0.85296 0.77442 0.78876 0.78668 1.20251 1.21419 1.21034 1.22289 0.93736 0.84625 1.01117 0.90081 0.89309 0.87147 0.79278 0.77064 0.71640 0.89423 0.90171 0.87033 0.91827 0.91390 0.91438 0.78912 0.93744 0.92148 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.84 113.37 1.12 1.25 16 2 O -0.33 -7.66 10.03 -88.06 -0.88 -8.55 16 3 C 0.21 4.52 6.60 23.09 0.15 4.67 16 4 C -0.26 -3.13 9.09 22.42 0.20 -2.93 16 5 C 0.18 2.19 11.15 84.58 0.94 3.13 16 6 N -0.54 -11.08 10.37 -308.28 -3.20 -14.27 16 7 C 0.38 9.41 7.77 85.14 0.66 10.07 16 8 O -0.49 -12.19 13.01 -87.17 -1.13 -13.33 16 9 C -0.25 -6.98 3.66 -19.83 -0.07 -7.05 16 10 C 0.58 21.33 6.30 86.61 0.55 21.88 16 11 O -0.59 -27.10 16.52 -4.11 -0.07 -27.17 16 12 N -0.59 -20.60 2.98 -823.93 -2.45 -23.05 16 13 C 0.11 2.90 6.31 86.22 0.54 3.44 16 14 C -0.12 -2.80 6.06 30.53 0.19 -2.61 16 15 C -0.12 -3.73 5.36 30.62 0.16 -3.57 16 16 C 0.17 7.24 2.92 45.05 0.13 7.37 16 17 H 0.03 1.45 8.08 -2.38 -0.02 1.43 16 18 N -0.73 -38.19 5.13 -322.61 -1.65 -39.85 16 19 C -0.25 -14.56 9.93 84.03 0.83 -13.73 16 20 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 21 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 22 N -0.96 -59.67 13.06 21.65 0.28 -59.38 16 23 Si 0.97 47.97 29.55 68.60 2.03 50.00 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 27 C 0.11 4.55 6.01 86.35 0.52 5.07 16 28 H 0.08 0.55 7.70 -2.39 -0.02 0.53 16 29 H 0.09 0.48 7.71 -2.39 -0.02 0.46 16 30 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.19 0.68 6.45 -2.91 -0.02 0.66 16 32 H 0.21 0.62 8.06 -2.91 -0.02 0.60 16 33 H 0.42 7.49 9.06 -74.06 -0.67 6.82 16 34 H 0.09 2.02 6.23 -2.39 -0.01 2.00 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.38 20.70 7.80 -92.71 -0.72 19.98 16 41 H 0.25 15.20 8.31 -92.72 -0.77 14.43 16 42 H 0.06 2.54 8.14 -2.39 -0.02 2.53 16 43 H 0.05 2.51 7.00 -2.39 -0.02 2.49 16 Total: -1.00 -83.64 359.71 -1.02 -84.66 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -0.33 Total: 27.34 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 6.39 Total: 23.60 kcal Atomic # 7 Polarization: -129.53 SS G_CDS: -7.02 Total: -136.55 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -2.09 Total: -49.05 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -83.64 -1.02 -84.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000706410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.618 kcal (2) G-P(sol) polarization free energy of solvation -83.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds