Wall clock time and date at job start Tue Mar 31 2020 13:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.47105 * 2 1 4 4 C 1.35353 * 116.99934 * 179.97438 * 3 2 1 5 5 N 1.30549 * 125.44658 * 179.97438 * 4 3 2 6 6 C 1.36330 * 108.38508 * 179.97438 * 5 4 3 7 7 C 1.47364 * 126.41559 * 179.97438 * 6 5 4 8 8 O 1.21625 * 120.00239 * 180.02562 * 7 6 5 9 9 N 1.34770 * 119.99973 * 0.02582 * 7 6 5 10 10 C 1.46504 * 120.00485 * 179.97438 * 9 7 6 11 11 C 1.50694 * 109.47709 * 180.02562 * 10 9 7 12 12 C 1.29446 * 117.69887 * 94.99920 * 11 10 9 13 13 C 1.50321 * 123.65514 * 180.85991 * 12 11 10 14 14 N 1.47001 * 109.16601 * 349.02190 * 13 12 11 15 15 C 1.36941 * 121.37770 * 222.96602 * 14 13 12 16 16 H 1.07999 * 119.99846 * 155.96804 * 15 14 13 17 17 C 1.38805 * 119.99772 * 335.97104 * 15 14 13 18 18 N 1.31621 * 120.00479 * 344.52161 * 17 15 14 19 19 Si 1.86806 * 119.99921 * 164.52024 * 17 15 14 20 20 H 1.48503 * 109.47053 * 59.99942 * 19 17 15 21 21 H 1.48498 * 109.47079 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46810 * 300.00184 * 19 17 15 23 23 C 1.47341 * 117.25062 * 42.94892 * 14 13 12 24 24 C 1.49974 * 117.69377 * 274.74107 * 11 10 9 25 25 C 1.35922 * 107.17296 * 0.02562 * 6 5 4 26 26 O 1.34205 * 125.44540 * 359.69666 * 4 3 2 27 27 H 1.09001 * 109.47006 * 300.00186 * 1 2 3 28 28 H 1.09004 * 109.46556 * 59.99952 * 1 2 3 29 29 H 1.09000 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46929 * 239.99679 * 2 1 3 31 31 H 1.09004 * 109.46898 * 119.99629 * 2 1 3 32 32 H 0.96997 * 120.00131 * 359.97438 * 9 7 6 33 33 H 1.09005 * 109.46831 * 300.00478 * 10 9 7 34 34 H 1.08997 * 109.46881 * 59.99605 * 10 9 7 35 35 H 1.08001 * 118.17436 * 0.88220 * 12 11 10 36 36 H 1.09000 * 109.52248 * 108.92924 * 13 12 11 37 37 H 1.08998 * 109.52045 * 229.11500 * 13 12 11 38 38 H 0.96997 * 120.00041 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.77993 * 57.80636 * 23 14 13 40 40 H 1.09001 * 109.78103 * 178.62087 * 23 14 13 41 41 H 1.09005 * 109.31369 * 281.29177 * 24 11 10 42 42 H 1.09003 * 109.31130 * 40.71272 * 24 11 10 43 43 H 1.08000 * 126.45554 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3482 1.5246 0.0005 5 7 3.9595 2.6781 0.0001 6 6 5.3040 2.4523 0.0015 7 6 6.3631 3.4770 0.0011 8 8 7.5326 3.1428 0.0020 9 7 6.0359 4.7843 -0.0003 10 6 7.0887 5.8031 -0.0001 11 6 6.4619 7.1735 -0.0012 12 6 6.3018 7.7628 1.1402 13 6 5.6752 9.1202 1.2962 14 7 5.5363 9.7428 -0.0282 15 6 5.8429 11.0618 -0.2317 16 1 6.1117 11.4076 -1.2189 17 6 5.8083 11.9543 0.8308 18 7 5.1995 11.6224 1.9496 19 14 6.6258 13.6265 0.6730 20 1 6.0040 14.3777 -0.4470 21 1 6.4489 14.3853 1.9371 22 1 8.0749 13.4456 0.4034 23 6 5.0539 8.8889 -1.1278 24 6 6.0730 7.7610 -1.3251 25 6 5.4847 1.1052 0.0022 26 8 4.2631 0.5427 0.0069 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 5.1033 5.0509 -0.0014 33 1 7.7064 5.6871 0.8905 34 1 7.7080 5.6857 -0.8894 35 1 6.6374 7.2507 2.0300 36 1 4.6919 9.0170 1.7551 37 1 6.3089 9.7435 1.9271 38 1 5.1751 12.2463 2.6919 39 1 4.0806 8.4708 -0.8704 40 1 4.9737 9.4759 -2.0427 41 1 6.9610 8.1549 -1.8196 42 1 5.6316 6.9836 -1.9488 43 1 6.4309 0.5846 0.0036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000909012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:21 Heat of formation + Delta-G solvation = -4.671126 kcal Electronic energy + Delta-G solvation = -26103.692083 eV Core-core repulsion = 22152.573413 eV Total energy + Delta-G solvation = -3951.118670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.74313 -39.68338 -39.22851 -37.70652 -35.24093 -34.92810 -32.83850 -32.41334 -30.86785 -29.88167 -29.63785 -27.14372 -24.92131 -24.15086 -23.47808 -22.73716 -22.43222 -21.06736 -20.68249 -19.37336 -17.91454 -17.74545 -17.44155 -16.73107 -16.04176 -15.98079 -15.64337 -15.33850 -15.18242 -14.84238 -14.24889 -13.82203 -13.70451 -13.59772 -13.41570 -13.31649 -13.26967 -12.95396 -12.29384 -12.24634 -12.04021 -11.82839 -11.53422 -11.34705 -11.18210 -11.04888 -10.88581 -10.71174 -10.45162 -10.32791 -10.22616 -9.80155 -9.57126 -9.10935 -8.86739 -8.65663 -8.03418 -6.72081 -5.77426 -3.16193 0.84339 1.55358 1.79785 2.35558 2.61169 3.20001 3.40731 3.42975 3.46314 3.47771 4.25104 4.27006 4.27060 4.51505 4.57348 4.59441 4.81509 5.11858 5.16051 5.18139 5.20333 5.37944 5.42286 5.46221 5.51497 5.61969 5.84158 5.94985 6.11572 6.20872 6.31276 6.38164 6.43914 6.55122 6.77033 6.91707 7.17181 7.20637 7.28728 7.36371 7.60996 7.75107 7.84829 8.14124 8.40433 9.21759 9.84572 10.42893 11.33056 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.002340 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.945262 B =11961.577095 C =12891.998035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.244 6.244 4 C 0.384 3.616 5 N -0.453 5.453 6 C -0.043 4.043 7 C 0.599 3.401 8 O -0.542 6.542 9 N -0.698 5.698 10 C 0.156 3.844 11 C -0.167 4.167 12 C -0.122 4.122 13 C 0.194 3.806 14 N -0.595 5.595 15 C -0.245 4.245 16 H 0.068 0.932 17 C -0.002 4.002 18 N -0.910 5.910 19 Si 0.905 3.095 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.144 3.856 24 C -0.090 4.090 25 C -0.001 4.001 26 O -0.227 6.227 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.412 0.588 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.254 0.746 39 H 0.025 0.975 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 -25.982 -3.433 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.152 6.152 4 C 0.138 3.862 5 N -0.199 5.199 6 C -0.162 4.162 7 C 0.383 3.617 8 O -0.420 6.420 9 N -0.348 5.348 10 C 0.034 3.966 11 C -0.168 4.168 12 C -0.143 4.143 13 C 0.069 3.931 14 N -0.319 5.319 15 C -0.375 4.375 16 H 0.086 0.914 17 C -0.200 4.200 18 N -0.555 5.555 19 Si 0.735 3.265 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.211 1.211 23 C 0.017 3.983 24 C -0.129 4.129 25 C -0.073 4.073 26 O -0.118 6.118 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.248 0.752 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -5.186 -25.402 -3.287 26.134 hybrid contribution 0.284 0.047 0.085 0.300 sum -4.903 -25.355 -3.203 26.023 Atomic orbital electron populations 1.21821 0.91142 1.03654 1.04377 1.23065 0.96954 0.79331 1.03003 1.86410 1.08863 1.30806 1.89128 1.23308 0.83504 0.81527 0.97908 1.71157 1.03873 1.21463 1.23366 1.21756 0.90270 0.94063 1.10121 1.16680 0.86057 0.81901 0.77027 1.90827 1.17933 1.81560 1.51660 1.46051 1.11815 1.04635 1.72324 1.20554 0.88993 0.84929 1.02111 1.20468 1.05469 0.94530 0.96340 1.23294 0.95682 0.99189 0.96093 1.19764 0.97923 0.87209 0.88220 1.44128 1.76034 1.07036 1.04665 1.19142 1.39217 0.83595 0.95532 0.91399 1.24990 0.99721 0.97826 0.97423 1.69999 1.44236 1.36279 1.05025 0.86319 0.79584 0.83765 0.76809 1.20939 1.21655 1.21086 1.20997 0.93558 0.91315 0.92432 1.20787 1.00400 0.98164 0.93546 1.24954 0.85825 0.92868 1.03690 1.84388 1.16249 1.39223 1.71961 0.90853 0.90873 0.89435 0.90803 0.90798 0.75170 0.91296 0.91210 0.88737 0.94021 0.88867 0.93560 0.95731 0.92468 0.91703 0.92832 0.74769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 10.28 37.16 0.38 -0.19 16 2 C 0.05 0.28 6.38 37.16 0.24 0.52 16 3 O -0.24 -2.37 10.19 -40.98 -0.42 -2.79 16 4 C 0.38 4.33 8.98 52.22 0.47 4.80 16 5 N -0.45 -6.10 11.10 -11.71 -0.13 -6.23 16 6 C -0.04 -0.55 6.99 -82.99 -0.58 -1.13 16 7 C 0.60 8.79 7.81 -12.55 -0.10 8.69 16 8 O -0.54 -9.00 16.89 5.26 0.09 -8.91 16 9 N -0.70 -10.23 5.54 -62.58 -0.35 -10.58 16 10 C 0.16 2.41 5.66 -5.19 -0.03 2.38 16 11 C -0.17 -2.95 5.22 -100.99 -0.53 -3.48 16 12 C -0.12 -2.36 9.47 -35.78 -0.34 -2.70 16 13 C 0.19 4.64 5.23 -5.10 -0.03 4.61 16 14 N -0.60 -15.02 3.01 -173.57 -0.52 -15.54 16 15 C -0.25 -6.76 9.71 -15.06 -0.15 -6.91 16 16 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 17 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 18 N -0.91 -26.34 11.08 55.49 0.61 -25.73 16 19 Si 0.91 21.84 29.58 -169.99 -5.03 16.81 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.14 3.01 6.59 -3.43 -0.02 2.99 16 24 C -0.09 -1.60 5.95 -28.08 -0.17 -1.77 16 25 C 0.00 -0.01 11.93 29.90 0.36 0.35 16 26 O -0.23 -2.16 10.20 -17.77 -0.18 -2.34 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.41 5.99 8.19 -40.82 -0.33 5.65 16 33 H 0.07 1.07 7.78 -51.93 -0.40 0.67 16 34 H 0.07 1.07 8.11 -51.93 -0.42 0.64 16 35 H 0.09 1.65 7.73 -52.49 -0.41 1.24 16 36 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.09 2.47 6.41 -51.93 -0.33 2.14 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.24 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -32.53 367.82 -7.05 -39.58 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.09 Total: 2.17 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -0.58 Total: 8.02 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.38 Total: -58.08 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.51 Total: -14.04 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.53 -7.05 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000909012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.905 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds