Wall clock time and date at job start Tue Mar 31 2020 13:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.47105 * 2 1 4 4 C 1.35353 * 116.99934 * 179.97438 * 3 2 1 5 5 N 1.30549 * 125.44658 * 179.97438 * 4 3 2 6 6 C 1.36330 * 108.38508 * 179.97438 * 5 4 3 7 7 C 1.47364 * 126.41559 * 179.97438 * 6 5 4 8 8 O 1.21625 * 120.00239 * 180.02562 * 7 6 5 9 9 N 1.34770 * 119.99973 * 0.02582 * 7 6 5 10 10 C 1.46504 * 120.00485 * 179.97438 * 9 7 6 11 11 C 1.50694 * 109.47709 * 180.02562 * 10 9 7 12 12 C 1.29446 * 117.69887 * 94.99920 * 11 10 9 13 13 C 1.50321 * 123.65514 * 180.85991 * 12 11 10 14 14 N 1.47001 * 109.16601 * 349.02190 * 13 12 11 15 15 C 1.36941 * 121.37770 * 222.96602 * 14 13 12 16 16 H 1.07999 * 119.99846 * 155.96804 * 15 14 13 17 17 C 1.38805 * 119.99772 * 335.97104 * 15 14 13 18 18 N 1.31621 * 120.00479 * 344.52161 * 17 15 14 19 19 Si 1.86806 * 119.99921 * 164.52024 * 17 15 14 20 20 H 1.48503 * 109.47053 * 59.99942 * 19 17 15 21 21 H 1.48498 * 109.47079 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46810 * 300.00184 * 19 17 15 23 23 C 1.47341 * 117.25062 * 42.94892 * 14 13 12 24 24 C 1.49974 * 117.69377 * 274.74107 * 11 10 9 25 25 C 1.35922 * 107.17296 * 0.02562 * 6 5 4 26 26 O 1.34205 * 125.44540 * 359.69666 * 4 3 2 27 27 H 1.09001 * 109.47006 * 300.00186 * 1 2 3 28 28 H 1.09004 * 109.46556 * 59.99952 * 1 2 3 29 29 H 1.09000 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46929 * 239.99679 * 2 1 3 31 31 H 1.09004 * 109.46898 * 119.99629 * 2 1 3 32 32 H 0.96997 * 120.00131 * 359.97438 * 9 7 6 33 33 H 1.09005 * 109.46831 * 300.00478 * 10 9 7 34 34 H 1.08997 * 109.46881 * 59.99605 * 10 9 7 35 35 H 1.08001 * 118.17436 * 0.88220 * 12 11 10 36 36 H 1.09000 * 109.52248 * 108.92924 * 13 12 11 37 37 H 1.08998 * 109.52045 * 229.11500 * 13 12 11 38 38 H 0.96997 * 120.00041 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.77993 * 57.80636 * 23 14 13 40 40 H 1.09001 * 109.78103 * 178.62087 * 23 14 13 41 41 H 1.09005 * 109.31369 * 281.29177 * 24 11 10 42 42 H 1.09003 * 109.31130 * 40.71272 * 24 11 10 43 43 H 1.08000 * 126.45554 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3482 1.5246 0.0005 5 7 3.9595 2.6781 0.0001 6 6 5.3040 2.4523 0.0015 7 6 6.3631 3.4770 0.0011 8 8 7.5326 3.1428 0.0020 9 7 6.0359 4.7843 -0.0003 10 6 7.0887 5.8031 -0.0001 11 6 6.4619 7.1735 -0.0012 12 6 6.3018 7.7628 1.1402 13 6 5.6752 9.1202 1.2962 14 7 5.5363 9.7428 -0.0282 15 6 5.8429 11.0618 -0.2317 16 1 6.1117 11.4076 -1.2189 17 6 5.8083 11.9543 0.8308 18 7 5.1995 11.6224 1.9496 19 14 6.6258 13.6265 0.6730 20 1 6.0040 14.3777 -0.4470 21 1 6.4489 14.3853 1.9371 22 1 8.0749 13.4456 0.4034 23 6 5.0539 8.8889 -1.1278 24 6 6.0730 7.7610 -1.3251 25 6 5.4847 1.1052 0.0022 26 8 4.2631 0.5427 0.0069 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 5.1033 5.0509 -0.0014 33 1 7.7064 5.6871 0.8905 34 1 7.7080 5.6857 -0.8894 35 1 6.6374 7.2507 2.0300 36 1 4.6919 9.0170 1.7551 37 1 6.3089 9.7435 1.9271 38 1 5.1751 12.2463 2.6919 39 1 4.0806 8.4708 -0.8704 40 1 4.9737 9.4759 -2.0427 41 1 6.9610 8.1549 -1.8196 42 1 5.6316 6.9836 -1.9488 43 1 6.4309 0.5846 0.0036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000909012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:21 Heat of formation + Delta-G solvation = -29.605400 kcal Electronic energy + Delta-G solvation = -26104.773314 eV Core-core repulsion = 22152.573413 eV Total energy + Delta-G solvation = -3952.199902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.55914 -40.79182 -39.95708 -39.30200 -36.45525 -36.09060 -34.50682 -32.91177 -32.57727 -31.43123 -30.65661 -28.70646 -26.39876 -24.99396 -24.51159 -24.27092 -23.34278 -22.69216 -21.66037 -20.27512 -19.47399 -18.65985 -18.56348 -17.60936 -17.28153 -17.12714 -16.89788 -16.64256 -16.15991 -16.10236 -15.72369 -15.39057 -15.22435 -14.93596 -14.52452 -14.42518 -13.94811 -13.92748 -13.64214 -13.56508 -13.27274 -12.95034 -12.77145 -12.67277 -12.58140 -12.53661 -12.25803 -12.11686 -11.91936 -11.79618 -11.70794 -11.50977 -11.23950 -10.67635 -10.21766 -9.75507 -9.66954 -8.75136 -7.87550 -5.29291 0.00852 0.82917 0.88849 1.14678 1.47690 1.50577 1.57036 1.68808 2.16334 2.29150 2.52018 3.29201 3.34169 3.61773 3.71822 3.85755 3.93077 3.95650 3.97345 4.08480 4.26617 4.38288 4.43887 4.53398 4.59734 4.67683 4.73887 4.83236 4.85222 4.86907 4.91448 5.09529 5.18969 5.20777 5.27508 5.39585 5.47870 5.61480 5.63284 5.75774 6.16099 6.27888 6.34250 6.55309 7.01612 7.13666 7.83433 8.38000 9.21065 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.002340 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.945262 B =11961.577095 C =12891.998035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 O -0.259 6.259 4 C 0.385 3.615 5 N -0.486 5.486 6 C -0.078 4.078 7 C 0.603 3.397 8 O -0.564 6.564 9 N -0.699 5.699 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.141 4.141 13 C 0.205 3.795 14 N -0.615 5.615 15 C -0.258 4.258 16 H 0.071 0.929 17 C -0.056 4.056 18 N -0.940 5.940 19 Si 0.970 3.030 20 H -0.275 1.275 21 H -0.294 1.294 22 H -0.279 1.279 23 C 0.138 3.862 24 C -0.084 4.084 25 C 0.032 3.968 26 O -0.215 6.215 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.012 0.988 37 H 0.059 0.941 38 H 0.250 0.750 39 H 0.024 0.976 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.971 -28.339 -4.642 29.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.167 6.167 4 C 0.138 3.862 5 N -0.233 5.233 6 C -0.196 4.196 7 C 0.389 3.611 8 O -0.444 6.444 9 N -0.348 5.348 10 C 0.044 3.956 11 C -0.143 4.143 12 C -0.162 4.162 13 C 0.080 3.920 14 N -0.339 5.339 15 C -0.388 4.388 16 H 0.089 0.911 17 C -0.250 4.250 18 N -0.587 5.587 19 Si 0.798 3.202 20 H -0.200 1.200 21 H -0.221 1.221 22 H -0.205 1.205 23 C 0.013 3.987 24 C -0.122 4.122 25 C -0.040 4.040 26 O -0.105 6.105 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.249 0.751 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.030 0.970 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -4.729 -27.790 -4.524 28.550 hybrid contribution 0.041 0.648 0.391 0.757 sum -4.688 -27.142 -4.133 27.853 Atomic orbital electron populations 1.21873 0.89981 1.05087 1.03783 1.23442 0.97839 0.77706 1.04225 1.86434 1.08005 1.33387 1.88908 1.23302 0.84171 0.81413 0.97287 1.71042 1.04492 1.22966 1.24777 1.21535 0.89808 0.94761 1.13479 1.16823 0.86205 0.81931 0.76099 1.90810 1.18880 1.81860 1.52827 1.45944 1.11529 1.04728 1.72623 1.20376 0.88987 0.83552 1.02708 1.20618 1.02928 0.95192 0.95524 1.22978 0.97939 0.97371 0.97873 1.19403 0.96228 0.89063 0.87316 1.44412 1.76526 1.07049 1.05912 1.19492 1.38690 0.84869 0.95707 0.91103 1.25774 1.00594 1.01390 0.97278 1.70170 1.45655 1.37278 1.05610 0.85294 0.78642 0.79641 0.76597 1.20041 1.22062 1.20546 1.21174 0.94431 0.91842 0.91270 1.20719 0.99675 0.97732 0.94109 1.25618 0.86654 0.91968 0.99792 1.84435 1.16040 1.38543 1.71525 0.91503 0.91401 0.86925 0.89500 0.89626 0.75084 0.91078 0.90323 0.86829 0.97021 0.92281 0.94102 0.95799 0.92109 0.91347 0.89804 0.71389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 71.98 0.74 -0.14 16 2 C 0.04 0.38 6.38 71.98 0.46 0.83 16 3 O -0.26 -4.74 10.19 -64.22 -0.65 -5.39 16 4 C 0.39 8.14 8.98 130.43 1.17 9.31 16 5 N -0.49 -12.63 11.10 -419.39 -4.65 -17.28 16 6 C -0.08 -1.87 6.99 40.31 0.28 -1.59 16 7 C 0.60 16.74 7.81 86.65 0.68 17.42 16 8 O -0.56 -17.67 16.89 -4.11 -0.07 -17.74 16 9 N -0.70 -19.40 5.54 -470.16 -2.61 -22.01 16 10 C 0.17 4.81 5.66 85.63 0.48 5.29 16 11 C -0.14 -4.82 5.22 -15.13 -0.08 -4.90 16 12 C -0.14 -5.49 9.47 27.11 0.26 -5.23 16 13 C 0.20 10.19 5.23 85.42 0.45 10.64 16 14 N -0.61 -31.58 3.01 -703.04 -2.11 -33.69 16 15 C -0.26 -14.39 9.71 84.03 0.82 -13.57 16 16 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 17 C -0.06 -3.16 5.01 84.86 0.43 -2.73 16 18 N -0.94 -56.34 11.08 21.65 0.24 -56.10 16 19 Si 0.97 45.54 29.58 68.60 2.03 47.57 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 C 0.14 5.75 6.59 86.32 0.57 6.32 16 24 C -0.08 -2.84 5.95 29.72 0.18 -2.66 16 25 C 0.03 0.54 11.93 67.28 0.80 1.34 16 26 O -0.21 -3.55 10.20 18.84 0.19 -3.35 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.09 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.41 11.53 8.19 -92.71 -0.76 10.77 16 33 H 0.07 2.07 7.78 -2.38 -0.02 2.05 16 34 H 0.08 2.19 8.11 -2.39 -0.02 2.17 16 35 H 0.11 3.94 7.73 -2.91 -0.02 3.92 16 36 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 3.30 6.41 -2.39 -0.02 3.28 16 38 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.06 2.44 7.96 -2.39 -0.02 2.43 16 41 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.27 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -71.63 367.82 -0.13 -71.76 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.27 Total: 15.91 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 7.23 Total: 20.33 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -9.13 Total: -129.09 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.53 Total: -26.48 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.63 -0.13 -71.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000909012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.154 kcal (2) G-P(sol) polarization free energy of solvation -71.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds