Wall clock time and date at job start Tue Mar 31 2020 13:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47194 * 2 1 4 4 C 1.35729 * 117.00098 * 180.02562 * 3 2 1 5 5 C 1.41853 * 126.78503 * 179.97438 * 4 3 2 6 6 C 1.36667 * 103.80811 * 179.70574 * 5 4 3 7 7 C 1.47541 * 126.87650 * 180.28158 * 6 5 4 8 8 O 1.21587 * 120.00253 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99774 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99663 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.46738 * 180.02562 * 10 9 7 12 12 C 1.29450 * 117.69420 * 95.00304 * 11 10 9 13 13 C 1.50327 * 123.65245 * 180.85776 * 12 11 10 14 14 N 1.47010 * 109.16290 * 349.01981 * 13 12 11 15 15 C 1.36933 * 121.37060 * 222.96860 * 14 13 12 16 16 H 1.08010 * 119.99689 * 155.98082 * 15 14 13 17 17 C 1.38806 * 120.00538 * 335.97519 * 15 14 13 18 18 N 1.31620 * 119.99841 * 344.50217 * 17 15 14 19 19 Si 1.86796 * 120.00352 * 164.49548 * 17 15 14 20 20 H 1.48500 * 109.47368 * 94.45667 * 19 17 15 21 21 H 1.48497 * 109.47777 * 214.45770 * 19 17 15 22 22 H 1.48502 * 109.47173 * 334.46191 * 19 17 15 23 23 C 1.47340 * 117.25043 * 42.94938 * 14 13 12 24 24 C 1.49970 * 117.69503 * 274.73878 * 11 10 9 25 25 O 1.34652 * 106.24347 * 0.26264 * 6 5 4 26 26 N 1.20880 * 111.63298 * 359.97438 * 25 6 5 27 27 H 1.09000 * 109.47436 * 59.99739 * 1 2 3 28 28 H 1.09001 * 109.47509 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47348 * 300.00192 * 1 2 3 30 30 H 1.08996 * 109.47094 * 240.00178 * 2 1 3 31 31 H 1.08996 * 109.46735 * 120.00176 * 2 1 3 32 32 H 1.07997 * 128.09799 * 359.97100 * 5 4 3 33 33 H 0.96999 * 120.00196 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.46998 * 300.00035 * 10 9 7 35 35 H 1.08992 * 109.47039 * 60.00405 * 10 9 7 36 36 H 1.08000 * 118.17963 * 0.87171 * 12 11 10 37 37 H 1.08998 * 109.52471 * 108.92513 * 13 12 11 38 38 H 1.09002 * 109.52240 * 229.11481 * 13 12 11 39 39 H 0.97001 * 119.99716 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.77712 * 57.80755 * 23 14 13 41 41 H 1.08995 * 109.77630 * 178.61936 * 23 14 13 42 42 H 1.09003 * 109.31216 * 281.29374 * 24 11 10 43 43 H 1.08996 * 109.31395 * 40.71630 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0452 2.7627 -0.0012 6 6 5.3625 2.3987 0.0053 7 6 6.5302 3.3004 0.0134 8 8 6.3678 4.5054 0.0153 9 7 7.7770 2.7884 0.0197 10 6 8.9365 3.6839 0.0283 11 6 10.2024 2.8663 0.0334 12 6 10.7684 2.6266 -1.1058 13 6 12.0224 1.8116 -1.2579 14 7 12.6116 1.5805 0.0690 15 6 13.9599 1.6936 0.2798 16 1 14.3357 1.9067 1.2697 17 6 14.8437 1.5343 -0.7786 18 7 14.4336 0.9827 -1.9011 19 14 16.6150 2.1029 -0.6101 20 1 17.4623 0.9621 -0.1791 21 1 17.0984 2.6117 -1.9188 22 1 16.6927 3.1871 0.4018 23 6 11.6915 1.2227 1.1627 24 6 10.7210 2.3929 1.3586 25 8 5.3812 1.0523 0.0032 26 7 4.2638 0.5911 -0.0030 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.6294 3.7594 -0.0017 33 1 7.9065 1.8271 0.0185 34 1 8.9152 4.3144 -0.8607 35 1 8.9048 4.3107 0.9193 36 1 10.3146 3.0349 -1.9967 37 1 11.7812 0.8548 -1.7209 38 1 12.7337 2.3510 -1.8834 39 1 15.0511 0.8718 -2.6408 40 1 11.1391 0.3205 0.8997 41 1 12.2561 1.0561 2.0800 42 1 11.2360 3.2135 1.8581 43 1 9.8850 2.0660 1.9769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000949196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:40 Heat of formation + Delta-G solvation = 33.825174 kcal Electronic energy + Delta-G solvation = -26008.811336 eV Core-core repulsion = 22059.361990 eV Total energy + Delta-G solvation = -3949.449345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.27940 -39.86086 -39.36662 -37.83464 -35.19549 -33.84022 -33.11842 -32.21825 -31.55669 -30.86120 -29.76243 -27.27784 -25.08779 -24.14936 -23.68493 -23.02087 -22.67480 -21.17703 -20.96488 -19.42501 -18.27560 -17.67449 -17.26164 -16.53908 -16.36013 -16.21191 -15.68165 -15.35269 -14.99784 -14.89942 -14.36885 -13.91563 -13.85779 -13.70389 -13.52262 -13.45781 -13.14468 -13.04929 -12.35892 -12.33743 -12.12203 -11.70555 -11.59181 -11.58696 -11.42254 -10.95455 -10.75583 -10.63714 -10.39780 -10.33750 -10.17915 -9.85957 -9.67073 -9.65323 -9.21937 -8.72241 -8.13255 -6.78074 -5.83043 -3.21727 0.47441 1.77434 2.18923 2.24208 2.68495 2.76981 3.36096 3.39970 3.43613 3.45831 3.76320 4.35425 4.43630 4.46984 4.51268 4.64342 4.75794 4.85537 5.04328 5.14781 5.26981 5.27851 5.35513 5.35999 5.52663 5.53049 5.71579 5.82273 6.01492 6.10249 6.18263 6.29152 6.45717 6.57773 6.68999 6.83629 7.09358 7.17293 7.20559 7.30789 7.67909 7.71598 7.77988 7.83768 8.34663 9.16165 9.78928 10.36600 11.27512 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.030323 B = 0.002091 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.180953 B =13390.183698 C =13801.896288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.281 6.281 4 C 0.206 3.794 5 C -0.157 4.157 6 C -0.053 4.053 7 C 0.601 3.399 8 O -0.514 6.514 9 N -0.700 5.700 10 C 0.156 3.844 11 C -0.171 4.171 12 C -0.118 4.118 13 C 0.192 3.808 14 N -0.595 5.595 15 C -0.246 4.246 16 H 0.069 0.931 17 C -0.001 4.001 18 N -0.910 5.910 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.143 3.857 24 C -0.090 4.090 25 O 0.119 5.881 26 N -0.389 5.389 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.190 0.810 33 H 0.410 0.590 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.043 0.957 38 H 0.094 0.906 39 H 0.254 0.746 40 H 0.025 0.975 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.899 0.138 3.311 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.009 3.991 5 C -0.180 4.180 6 C -0.120 4.120 7 C 0.383 3.617 8 O -0.390 6.390 9 N -0.351 5.351 10 C 0.034 3.966 11 C -0.171 4.171 12 C -0.139 4.139 13 C 0.067 3.933 14 N -0.318 5.318 15 C -0.375 4.375 16 H 0.087 0.913 17 C -0.199 4.199 18 N -0.555 5.555 19 Si 0.734 3.266 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.016 3.984 24 C -0.130 4.130 25 O 0.053 5.947 26 N -0.113 5.113 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.207 0.793 33 H 0.246 0.754 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.163 -0.133 3.170 24.370 hybrid contribution 0.680 0.369 -0.091 0.779 sum -23.483 0.236 3.079 23.685 Atomic orbital electron populations 1.21800 0.92047 1.03312 1.03716 1.22863 0.95988 0.80403 1.02596 1.86218 1.12895 1.30425 1.89272 1.21841 0.85917 0.90451 1.00896 1.22170 0.90075 0.99276 1.06429 1.24144 0.96643 0.84359 1.06832 1.16511 0.81142 0.86042 0.78006 1.90886 1.84925 1.12831 1.50387 1.46161 1.04766 1.11788 1.72346 1.20627 0.82044 0.91381 1.02518 1.20460 0.96342 1.03905 0.96424 1.23334 0.98428 0.96020 0.96111 1.19788 0.89461 0.95791 0.88240 1.44130 1.02841 1.80131 1.04731 1.19179 0.81191 1.41679 0.95478 0.91343 1.24988 0.97975 0.99588 0.97377 1.70006 1.34901 1.45596 1.04992 0.86243 0.84771 0.78528 0.77027 1.21503 1.21571 1.20465 1.20999 0.91537 0.93230 0.92589 1.20794 0.98542 1.00162 0.93454 1.84976 1.22841 1.18551 1.68327 1.74023 0.90415 1.22086 1.24745 0.91297 0.89854 0.91308 0.91423 0.91434 0.79283 0.75428 0.90914 0.90817 0.88624 0.93915 0.88775 0.93594 0.95748 0.92419 0.91620 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.06 0.42 6.38 37.16 0.24 0.66 16 3 O -0.28 -2.85 10.21 -18.89 -0.19 -3.04 16 4 C 0.21 2.31 8.00 -16.72 -0.13 2.17 16 5 C -0.16 -1.66 10.97 -38.77 -0.43 -2.09 16 6 C -0.05 -0.60 7.29 -36.36 -0.26 -0.87 16 7 C 0.60 7.56 7.82 -12.47 -0.10 7.46 16 8 O -0.51 -7.84 16.91 5.29 0.09 -7.75 16 9 N -0.70 -8.37 5.55 -62.53 -0.35 -8.71 16 10 C 0.16 2.09 5.66 -5.19 -0.03 2.06 16 11 C -0.17 -2.70 5.22 -100.99 -0.53 -3.23 16 12 C -0.12 -2.10 9.47 -35.78 -0.34 -2.44 16 13 C 0.19 4.36 5.23 -5.10 -0.03 4.33 16 14 N -0.60 -14.34 3.01 -173.56 -0.52 -14.86 16 15 C -0.25 -6.57 9.71 -15.06 -0.15 -6.71 16 16 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 17 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 18 N -0.91 -25.66 11.08 55.49 0.61 -25.04 16 19 Si 0.90 21.34 29.58 -169.99 -5.03 16.31 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.14 2.82 6.59 -3.44 -0.02 2.80 16 24 C -0.09 -1.47 5.95 -28.09 -0.17 -1.64 16 25 O 0.12 1.37 11.03 15.53 0.17 1.54 16 26 N -0.39 -4.63 11.50 30.47 0.35 -4.28 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.19 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.41 4.43 8.29 -40.82 -0.34 4.09 16 34 H 0.07 0.98 7.78 -51.93 -0.40 0.58 16 35 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 36 H 0.10 1.51 7.73 -52.49 -0.41 1.10 16 37 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 2.40 6.41 -51.93 -0.33 2.06 16 39 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -30.37 367.55 -7.06 -37.43 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.09 Total: 0.86 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.65 Total: 2.00 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.10 Total: -52.90 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.07 Total: -9.24 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.37 -7.06 -37.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000949196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.258 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds