Wall clock time and date at job start Tue Mar 31 2020 13:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47194 * 2 1 4 4 C 1.35729 * 117.00098 * 180.02562 * 3 2 1 5 5 C 1.41853 * 126.78503 * 179.97438 * 4 3 2 6 6 C 1.36667 * 103.80811 * 179.70574 * 5 4 3 7 7 C 1.47541 * 126.87650 * 180.28158 * 6 5 4 8 8 O 1.21587 * 120.00253 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99774 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99663 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.46738 * 180.02562 * 10 9 7 12 12 C 1.29450 * 117.69420 * 95.00304 * 11 10 9 13 13 C 1.50327 * 123.65245 * 180.85776 * 12 11 10 14 14 N 1.47010 * 109.16290 * 349.01981 * 13 12 11 15 15 C 1.36933 * 121.37060 * 222.96860 * 14 13 12 16 16 H 1.08010 * 119.99689 * 155.98082 * 15 14 13 17 17 C 1.38806 * 120.00538 * 335.97519 * 15 14 13 18 18 N 1.31620 * 119.99841 * 344.50217 * 17 15 14 19 19 Si 1.86796 * 120.00352 * 164.49548 * 17 15 14 20 20 H 1.48500 * 109.47368 * 94.45667 * 19 17 15 21 21 H 1.48497 * 109.47777 * 214.45770 * 19 17 15 22 22 H 1.48502 * 109.47173 * 334.46191 * 19 17 15 23 23 C 1.47340 * 117.25043 * 42.94938 * 14 13 12 24 24 C 1.49970 * 117.69503 * 274.73878 * 11 10 9 25 25 O 1.34652 * 106.24347 * 0.26264 * 6 5 4 26 26 N 1.20880 * 111.63298 * 359.97438 * 25 6 5 27 27 H 1.09000 * 109.47436 * 59.99739 * 1 2 3 28 28 H 1.09001 * 109.47509 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47348 * 300.00192 * 1 2 3 30 30 H 1.08996 * 109.47094 * 240.00178 * 2 1 3 31 31 H 1.08996 * 109.46735 * 120.00176 * 2 1 3 32 32 H 1.07997 * 128.09799 * 359.97100 * 5 4 3 33 33 H 0.96999 * 120.00196 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.46998 * 300.00035 * 10 9 7 35 35 H 1.08992 * 109.47039 * 60.00405 * 10 9 7 36 36 H 1.08000 * 118.17963 * 0.87171 * 12 11 10 37 37 H 1.08998 * 109.52471 * 108.92513 * 13 12 11 38 38 H 1.09002 * 109.52240 * 229.11481 * 13 12 11 39 39 H 0.97001 * 119.99716 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.77712 * 57.80755 * 23 14 13 41 41 H 1.08995 * 109.77630 * 178.61936 * 23 14 13 42 42 H 1.09003 * 109.31216 * 281.29374 * 24 11 10 43 43 H 1.08996 * 109.31395 * 40.71630 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 -0.0005 5 6 4.0452 2.7627 -0.0012 6 6 5.3625 2.3987 0.0053 7 6 6.5302 3.3004 0.0134 8 8 6.3678 4.5054 0.0153 9 7 7.7770 2.7884 0.0197 10 6 8.9365 3.6839 0.0283 11 6 10.2024 2.8663 0.0334 12 6 10.7684 2.6266 -1.1058 13 6 12.0224 1.8116 -1.2579 14 7 12.6116 1.5805 0.0690 15 6 13.9599 1.6936 0.2798 16 1 14.3357 1.9067 1.2697 17 6 14.8437 1.5343 -0.7786 18 7 14.4336 0.9827 -1.9011 19 14 16.6150 2.1029 -0.6101 20 1 17.4623 0.9621 -0.1791 21 1 17.0984 2.6117 -1.9188 22 1 16.6927 3.1871 0.4018 23 6 11.6915 1.2227 1.1627 24 6 10.7210 2.3929 1.3586 25 8 5.3812 1.0523 0.0032 26 7 4.2638 0.5911 -0.0030 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.6294 3.7594 -0.0017 33 1 7.9065 1.8271 0.0185 34 1 8.9152 4.3144 -0.8607 35 1 8.9048 4.3107 0.9193 36 1 10.3146 3.0349 -1.9967 37 1 11.7812 0.8548 -1.7209 38 1 12.7337 2.3510 -1.8834 39 1 15.0511 0.8718 -2.6408 40 1 11.1391 0.3205 0.8997 41 1 12.2561 1.0561 2.0800 42 1 11.2360 3.2135 1.8581 43 1 9.8850 2.0660 1.9769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000949196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:39 Heat of formation + Delta-G solvation = 12.962041 kcal Electronic energy + Delta-G solvation = -26009.716029 eV Core-core repulsion = 22059.361990 eV Total energy + Delta-G solvation = -3950.354039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.14696 -40.92003 -40.10427 -39.32326 -36.54303 -34.75023 -34.53147 -33.26491 -32.46292 -32.12550 -31.38197 -28.74521 -26.45531 -25.18195 -24.55791 -24.37945 -23.76967 -22.72521 -21.83316 -20.40713 -19.42863 -19.14070 -18.05125 -17.72581 -17.30864 -17.09919 -17.01530 -16.85838 -16.27764 -15.83941 -15.61263 -15.38096 -15.20763 -15.00170 -14.68436 -14.46421 -14.09164 -13.95038 -13.62036 -13.55139 -13.24601 -13.00296 -12.90447 -12.78493 -12.56477 -12.40081 -12.21784 -12.14524 -12.09015 -11.68419 -11.64108 -11.22225 -11.06122 -10.66874 -10.47687 -10.24413 -9.64549 -8.72490 -7.86780 -5.27487 -0.41654 0.92392 1.07291 1.46361 1.47912 1.49887 1.59251 1.61963 1.80911 2.39290 2.52852 2.93965 3.30611 3.56967 3.63953 3.74300 3.90235 3.91269 3.91977 4.00792 4.08109 4.26617 4.47226 4.54099 4.57878 4.66664 4.76964 4.78790 4.85341 4.87739 4.94777 5.10773 5.15237 5.17253 5.25751 5.42933 5.52196 5.63649 5.78854 5.84702 6.19241 6.21928 6.36005 6.79999 6.91301 7.15740 7.86105 8.39357 9.21751 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.030323 B = 0.002091 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.180953 B =13390.183698 C =13801.896288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.288 6.288 4 C 0.202 3.798 5 C -0.150 4.150 6 C -0.057 4.057 7 C 0.610 3.390 8 O -0.540 6.540 9 N -0.693 5.693 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.138 4.138 13 C 0.202 3.798 14 N -0.615 5.615 15 C -0.255 4.255 16 H 0.070 0.930 17 C -0.055 4.055 18 N -0.939 5.939 19 Si 0.967 3.033 20 H -0.287 1.287 21 H -0.294 1.294 22 H -0.270 1.270 23 C 0.136 3.864 24 C -0.085 4.085 25 O 0.118 5.882 26 N -0.401 5.401 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.206 0.794 33 H 0.417 0.583 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.014 0.986 38 H 0.057 0.943 39 H 0.249 0.751 40 H 0.027 0.973 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.704 0.819 4.535 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 O -0.195 6.195 4 C 0.005 3.995 5 C -0.173 4.173 6 C -0.123 4.123 7 C 0.393 3.607 8 O -0.418 6.418 9 N -0.344 5.344 10 C 0.044 3.956 11 C -0.143 4.143 12 C -0.158 4.158 13 C 0.077 3.923 14 N -0.339 5.339 15 C -0.385 4.385 16 H 0.088 0.912 17 C -0.250 4.250 18 N -0.586 5.586 19 Si 0.795 3.205 20 H -0.214 1.214 21 H -0.220 1.220 22 H -0.195 1.195 23 C 0.011 3.989 24 C -0.124 4.124 25 O 0.052 5.948 26 N -0.125 5.125 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.223 0.777 33 H 0.254 0.746 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.135 0.865 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.996 0.532 4.421 26.375 hybrid contribution 1.145 0.087 -0.392 1.213 sum -24.851 0.618 4.029 25.183 Atomic orbital electron populations 1.21827 0.90019 1.04664 1.03821 1.23113 0.97582 0.79307 1.02537 1.86235 1.12244 1.31975 1.89066 1.22009 0.86389 0.90510 1.00567 1.22424 0.89772 0.99864 1.05202 1.23897 0.96423 0.84290 1.07709 1.16453 0.81266 0.85691 0.77249 1.90881 1.85295 1.13945 1.51667 1.45983 1.04296 1.12017 1.72068 1.20450 0.80935 0.90973 1.03289 1.20588 0.96492 1.01807 0.95429 1.22989 0.97130 0.97633 0.98050 1.19437 0.90747 0.94919 0.87212 1.44416 1.02811 1.80594 1.06107 1.19512 0.82781 1.40693 0.95508 0.91208 1.25721 1.01625 1.00296 0.97330 1.70167 1.35827 1.47090 1.05560 0.85268 0.80431 0.78079 0.76725 1.21408 1.22023 1.19523 1.21199 0.91590 0.94858 0.91226 1.20734 0.98798 0.98650 0.94180 1.84965 1.22756 1.18555 1.68520 1.74007 0.90687 1.22528 1.25276 0.91208 0.87867 0.91148 0.91543 0.91439 0.77693 0.74561 0.90556 0.89814 0.86527 0.96841 0.92453 0.94174 0.95447 0.92364 0.91547 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 71.98 0.74 -0.44 16 2 C 0.05 0.67 6.38 71.98 0.46 1.13 16 3 O -0.29 -5.43 10.21 -90.52 -0.92 -6.36 16 4 C 0.20 4.23 8.00 85.78 0.69 4.92 16 5 C -0.15 -2.91 10.97 22.80 0.25 -2.66 16 6 C -0.06 -1.18 7.29 24.36 0.18 -1.00 16 7 C 0.61 13.94 7.82 86.70 0.68 14.61 16 8 O -0.54 -15.25 16.91 -3.99 -0.07 -15.32 16 9 N -0.69 -14.67 5.55 -469.99 -2.61 -17.28 16 10 C 0.17 3.93 5.66 85.63 0.48 4.42 16 11 C -0.14 -4.20 5.22 -15.13 -0.08 -4.28 16 12 C -0.14 -4.80 9.47 27.11 0.26 -4.55 16 13 C 0.20 9.44 5.23 85.42 0.45 9.89 16 14 N -0.62 -29.98 3.01 -703.01 -2.11 -32.09 16 15 C -0.25 -13.78 9.71 84.03 0.82 -12.96 16 16 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 17 C -0.05 -3.04 5.01 84.86 0.42 -2.61 16 18 N -0.94 -54.83 11.08 21.65 0.24 -54.59 16 19 Si 0.97 44.56 29.58 68.60 2.03 46.59 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 C 0.14 5.25 6.59 86.31 0.57 5.82 16 24 C -0.09 -2.55 5.95 29.72 0.18 -2.37 16 25 O 0.12 2.53 11.03 65.74 0.72 3.26 16 26 N -0.40 -9.01 11.50 -172.02 -1.98 -10.99 16 27 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.21 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.42 7.88 8.29 -92.71 -0.77 7.11 16 34 H 0.08 1.84 7.78 -2.38 -0.02 1.82 16 35 H 0.08 1.92 8.11 -2.39 -0.02 1.90 16 36 H 0.12 3.55 7.73 -2.91 -0.02 3.53 16 37 H 0.01 0.70 8.14 -2.39 -0.02 0.69 16 38 H 0.06 3.06 6.41 -2.39 -0.02 3.05 16 39 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 2.19 7.96 -2.39 -0.02 2.18 16 42 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 43 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -66.20 367.55 1.66 -64.54 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.27 Total: 12.32 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 6.09 Total: 9.92 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -6.46 Total: -114.96 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.27 Total: -18.41 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -66.20 1.66 -64.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000949196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.506 kcal (2) G-P(sol) polarization free energy of solvation -66.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds