Wall clock time and date at job start Tue Mar 31 2020 13:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99825 * 2 1 4 4 C 1.50697 * 109.47269 * 179.97438 * 3 2 1 5 5 C 1.35323 * 126.66478 * 90.26363 * 4 3 2 6 6 C 1.42266 * 103.92455 * 180.10947 * 5 4 3 7 7 C 1.48332 * 126.93938 * 179.91039 * 6 5 4 8 8 O 1.21490 * 119.99701 * 359.71096 * 7 6 5 9 9 N 1.34775 * 119.99727 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99628 * 179.72154 * 9 7 6 11 11 C 1.50700 * 109.47164 * 179.97438 * 10 9 7 12 12 C 1.29458 * 117.69204 * 95.00436 * 11 10 9 13 13 C 1.50318 * 123.65109 * 180.86186 * 12 11 10 14 14 N 1.47011 * 109.16656 * 349.01845 * 13 12 11 15 15 C 1.36935 * 121.37757 * 222.97065 * 14 13 12 16 16 H 1.07999 * 120.00200 * 155.97033 * 15 14 13 17 17 C 1.38816 * 120.00021 * 335.97113 * 15 14 13 18 18 N 1.31621 * 119.99559 * 344.51786 * 17 15 14 19 19 Si 1.86800 * 120.00059 * 164.51799 * 17 15 14 20 20 H 1.48501 * 109.46996 * 89.99854 * 19 17 15 21 21 H 1.48504 * 109.47006 * 210.00124 * 19 17 15 22 22 H 1.48503 * 109.47150 * 329.99743 * 19 17 15 23 23 C 1.47338 * 117.24740 * 42.95009 * 14 13 12 24 24 C 1.49967 * 117.69760 * 274.74518 * 11 10 9 25 25 N 1.30991 * 106.12084 * 359.64874 * 6 5 4 26 26 O 1.20906 * 111.43872 * 0.22726 * 25 6 5 27 27 H 1.09001 * 109.47674 * 59.99654 * 1 2 3 28 28 H 1.09002 * 109.46737 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47017 * 299.99264 * 1 2 3 30 30 H 1.08999 * 109.46885 * 60.00556 * 3 2 1 31 31 H 1.08996 * 109.47421 * 300.00437 * 3 2 1 32 32 H 1.08002 * 128.03705 * 0.02562 * 5 4 3 33 33 H 0.96997 * 120.00403 * 359.72621 * 9 7 6 34 34 H 1.09003 * 109.47680 * 300.00071 * 10 9 7 35 35 H 1.09005 * 109.47224 * 60.00650 * 10 9 7 36 36 H 1.07994 * 118.17414 * 0.87894 * 12 11 10 37 37 H 1.09001 * 109.52900 * 108.92643 * 13 12 11 38 38 H 1.09000 * 109.52201 * 229.11327 * 13 12 11 39 39 H 0.97003 * 119.99387 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.78015 * 57.81098 * 23 14 13 41 41 H 1.09001 * 109.77655 * 178.61824 * 23 14 13 42 42 H 1.09009 * 109.31287 * 281.29024 * 24 11 10 43 43 H 1.08998 * 109.31703 * 40.71239 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.3188 1.1276 -1.0845 6 6 5.6262 1.0191 -0.5340 7 6 6.9029 0.9184 -1.2823 8 8 6.8966 0.9186 -2.4972 9 7 8.0695 0.8213 -0.6145 10 6 9.3300 0.7157 -1.3535 11 6 10.4766 0.6210 -0.3802 12 6 10.9040 -0.5602 -0.0670 13 6 12.0251 -0.8104 0.9025 14 7 12.6955 0.4627 1.2042 15 6 14.0605 0.5528 1.2647 16 1 14.5469 1.5028 1.0992 17 6 14.8193 -0.5769 1.5388 18 7 14.2439 -1.6514 2.0356 19 14 16.6567 -0.5720 1.2026 20 1 17.3796 -0.0977 2.4100 21 1 17.1023 -1.9485 0.8677 22 1 16.9490 0.3339 0.0628 23 6 11.8380 1.6377 1.4383 24 6 11.0461 1.9019 0.1527 25 7 5.4752 1.0317 0.7671 26 8 4.3098 1.1240 1.0759 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 4.0356 1.1551 -2.1264 33 1 8.0746 0.8212 0.3555 34 1 9.3103 -0.1760 -1.9801 35 1 9.4584 1.5978 -1.9808 36 1 10.4287 -1.4132 -0.5282 37 1 11.6235 -1.2373 1.8216 38 1 12.7411 -1.5033 0.4605 39 1 14.7741 -2.4406 2.2275 40 1 11.1538 1.4367 2.2627 41 1 12.4559 2.5042 1.6739 42 1 11.7041 2.3431 -0.5961 43 1 10.2335 2.5957 0.3681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001236963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:56 Heat of formation + Delta-G solvation = 28.071335 kcal Electronic energy + Delta-G solvation = -25919.669513 eV Core-core repulsion = 21969.970662 eV Total energy + Delta-G solvation = -3949.698851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.40998 -39.72547 -38.50384 -37.78697 -35.07340 -34.34741 -33.26467 -32.69335 -30.88923 -29.74643 -28.27800 -27.32888 -26.13702 -25.10642 -23.70464 -22.92619 -22.67953 -21.11213 -20.31636 -18.39717 -18.23029 -17.66324 -17.11321 -16.79847 -16.42387 -16.06744 -15.73470 -15.45242 -15.28365 -14.91700 -14.35644 -14.07334 -13.82920 -13.66135 -13.46051 -13.38818 -13.01872 -12.77206 -12.30857 -12.09937 -12.08854 -11.88465 -11.58579 -11.40306 -10.93503 -10.74640 -10.73610 -10.53792 -10.37642 -10.35900 -10.29837 -10.01226 -9.84303 -9.62859 -9.12038 -8.70159 -8.10039 -6.76259 -5.81259 -3.19978 0.77002 1.26167 2.39859 2.47531 3.01326 3.18943 3.37368 3.44295 3.44422 3.46729 3.75386 4.16926 4.44225 4.48356 4.58948 4.69370 4.79957 4.82665 4.97415 5.07593 5.12704 5.16432 5.30855 5.37831 5.48773 5.55909 5.75889 5.86937 6.04689 6.13632 6.29653 6.31703 6.41944 6.48399 6.71065 6.85554 7.13307 7.22117 7.27029 7.37243 7.69419 7.71148 7.79935 7.98789 8.36340 9.17768 9.80551 10.38645 11.29327 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.002053 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.852624 B =13638.529485 C =13889.497884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.145 3.855 4 C -0.043 4.043 5 C -0.154 4.154 6 C -0.026 4.026 7 C 0.595 3.405 8 O -0.528 6.528 9 N -0.702 5.702 10 C 0.157 3.843 11 C -0.170 4.170 12 C -0.120 4.120 13 C 0.193 3.807 14 N -0.595 5.595 15 C -0.246 4.246 16 H 0.069 0.931 17 C -0.002 4.002 18 N -0.910 5.910 19 Si 0.905 3.095 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.143 3.857 24 C -0.090 4.090 25 N -0.320 5.320 26 O 0.134 5.866 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.183 0.817 33 H 0.409 0.591 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.043 0.957 38 H 0.094 0.906 39 H 0.254 0.746 40 H 0.024 0.976 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.168 6.156 -4.453 28.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.068 3.932 4 C -0.106 4.106 5 C -0.176 4.176 6 C -0.185 4.185 7 C 0.378 3.622 8 O -0.403 6.403 9 N -0.353 5.353 10 C 0.035 3.965 11 C -0.170 4.170 12 C -0.141 4.141 13 C 0.068 3.932 14 N -0.318 5.318 15 C -0.375 4.375 16 H 0.086 0.914 17 C -0.200 4.200 18 N -0.555 5.555 19 Si 0.735 3.265 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.017 3.983 24 C -0.129 4.129 25 N -0.018 5.018 26 O 0.055 5.945 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.201 0.799 33 H 0.244 0.756 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.989 5.762 -4.319 26.968 hybrid contribution 0.361 0.050 -0.475 0.599 sum -25.628 5.812 -4.794 26.713 Atomic orbital electron populations 1.22833 0.79615 1.03578 1.00474 1.87991 1.20617 1.26222 1.95567 1.20648 0.83008 0.86261 1.03279 1.23923 0.95087 1.05773 0.85785 1.22486 0.89747 1.03846 1.01527 1.23594 0.97017 1.07825 0.90071 1.16877 0.81576 0.77420 0.86361 1.90796 1.86520 1.50544 1.12426 1.46109 1.05624 1.72299 1.11245 1.20584 0.80345 1.02172 0.93419 1.20471 0.98383 0.96270 1.01913 1.23322 0.97976 0.95873 0.96879 1.19778 0.90649 0.89191 0.93573 1.44125 1.02038 1.04328 1.81317 1.19171 0.81027 0.95710 1.41638 0.91354 1.24997 0.98083 0.97469 0.99403 1.70009 1.35013 1.04295 1.46175 0.86252 0.85244 0.76899 0.78130 1.21423 1.21559 1.20529 1.20994 0.92972 0.91417 0.92932 1.20789 0.98523 0.93750 0.99834 1.74238 0.97201 1.14708 1.15676 1.84802 1.11376 1.65099 1.33222 0.93500 0.88973 0.93427 0.90273 0.89253 0.79924 0.75597 0.91135 0.91061 0.88705 0.93962 0.88770 0.93582 0.95803 0.92394 0.91616 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 101.05 1.11 1.23 16 2 O -0.39 -2.83 10.69 -35.23 -0.38 -3.21 16 3 C 0.15 0.78 6.50 36.00 0.23 1.02 16 4 C -0.04 -0.38 7.10 -35.35 -0.25 -0.63 16 5 C -0.15 -1.58 10.92 -39.07 -0.43 -2.00 16 6 C -0.03 -0.34 7.19 -82.53 -0.59 -0.93 16 7 C 0.59 8.89 7.85 -12.11 -0.10 8.79 16 8 O -0.53 -9.10 16.95 5.37 0.09 -9.01 16 9 N -0.70 -10.16 5.55 -62.27 -0.35 -10.50 16 10 C 0.16 2.40 5.66 -5.19 -0.03 2.37 16 11 C -0.17 -2.96 5.22 -100.99 -0.53 -3.48 16 12 C -0.12 -2.30 9.47 -35.78 -0.34 -2.64 16 13 C 0.19 4.58 5.23 -5.10 -0.03 4.55 16 14 N -0.59 -14.87 3.01 -173.56 -0.52 -15.39 16 15 C -0.25 -6.74 9.71 -15.06 -0.15 -6.88 16 16 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 17 C 0.00 -0.05 5.01 -17.43 -0.09 -0.13 16 18 N -0.91 -26.20 11.08 55.49 0.61 -25.59 16 19 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.14 2.98 6.59 -3.44 -0.02 2.95 16 24 C -0.09 -1.58 5.95 -28.09 -0.17 -1.75 16 25 N -0.32 -4.10 11.84 33.30 0.39 -3.70 16 26 O 0.13 1.46 11.18 17.26 0.19 1.66 16 27 H 0.05 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.41 5.70 8.22 -40.82 -0.34 5.36 16 34 H 0.07 1.09 7.78 -51.93 -0.40 0.69 16 35 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 36 H 0.09 1.64 7.73 -52.49 -0.41 1.23 16 37 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 2.48 6.41 -51.93 -0.33 2.15 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 42 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -32.53 368.33 -6.88 -39.42 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.09 Total: 1.63 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.37 Total: 2.46 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.14 Total: -55.19 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.53 -6.88 -39.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001236963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.489 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds