Wall clock time and date at job start Tue Mar 31 2020 13:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99825 * 2 1 4 4 C 1.50697 * 109.47269 * 179.97438 * 3 2 1 5 5 C 1.35323 * 126.66478 * 90.26363 * 4 3 2 6 6 C 1.42266 * 103.92455 * 180.10947 * 5 4 3 7 7 C 1.48332 * 126.93938 * 179.91039 * 6 5 4 8 8 O 1.21490 * 119.99701 * 359.71096 * 7 6 5 9 9 N 1.34775 * 119.99727 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99628 * 179.72154 * 9 7 6 11 11 C 1.50700 * 109.47164 * 179.97438 * 10 9 7 12 12 C 1.29458 * 117.69204 * 95.00436 * 11 10 9 13 13 C 1.50318 * 123.65109 * 180.86186 * 12 11 10 14 14 N 1.47011 * 109.16656 * 349.01845 * 13 12 11 15 15 C 1.36935 * 121.37757 * 222.97065 * 14 13 12 16 16 H 1.07999 * 120.00200 * 155.97033 * 15 14 13 17 17 C 1.38816 * 120.00021 * 335.97113 * 15 14 13 18 18 N 1.31621 * 119.99559 * 344.51786 * 17 15 14 19 19 Si 1.86800 * 120.00059 * 164.51799 * 17 15 14 20 20 H 1.48501 * 109.46996 * 89.99854 * 19 17 15 21 21 H 1.48504 * 109.47006 * 210.00124 * 19 17 15 22 22 H 1.48503 * 109.47150 * 329.99743 * 19 17 15 23 23 C 1.47338 * 117.24740 * 42.95009 * 14 13 12 24 24 C 1.49967 * 117.69760 * 274.74518 * 11 10 9 25 25 N 1.30991 * 106.12084 * 359.64874 * 6 5 4 26 26 O 1.20906 * 111.43872 * 0.22726 * 25 6 5 27 27 H 1.09001 * 109.47674 * 59.99654 * 1 2 3 28 28 H 1.09002 * 109.46737 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47017 * 299.99264 * 1 2 3 30 30 H 1.08999 * 109.46885 * 60.00556 * 3 2 1 31 31 H 1.08996 * 109.47421 * 300.00437 * 3 2 1 32 32 H 1.08002 * 128.03705 * 0.02562 * 5 4 3 33 33 H 0.96997 * 120.00403 * 359.72621 * 9 7 6 34 34 H 1.09003 * 109.47680 * 300.00071 * 10 9 7 35 35 H 1.09005 * 109.47224 * 60.00650 * 10 9 7 36 36 H 1.07994 * 118.17414 * 0.87894 * 12 11 10 37 37 H 1.09001 * 109.52900 * 108.92643 * 13 12 11 38 38 H 1.09000 * 109.52201 * 229.11327 * 13 12 11 39 39 H 0.97003 * 119.99387 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.78015 * 57.81098 * 23 14 13 41 41 H 1.09001 * 109.77655 * 178.61824 * 23 14 13 42 42 H 1.09009 * 109.31287 * 281.29024 * 24 11 10 43 43 H 1.08998 * 109.31703 * 40.71239 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.3188 1.1276 -1.0845 6 6 5.6262 1.0191 -0.5340 7 6 6.9029 0.9184 -1.2823 8 8 6.8966 0.9186 -2.4972 9 7 8.0695 0.8213 -0.6145 10 6 9.3300 0.7157 -1.3535 11 6 10.4766 0.6210 -0.3802 12 6 10.9040 -0.5602 -0.0670 13 6 12.0251 -0.8104 0.9025 14 7 12.6955 0.4627 1.2042 15 6 14.0605 0.5528 1.2647 16 1 14.5469 1.5028 1.0992 17 6 14.8193 -0.5769 1.5388 18 7 14.2439 -1.6514 2.0356 19 14 16.6567 -0.5720 1.2026 20 1 17.3796 -0.0977 2.4100 21 1 17.1023 -1.9485 0.8677 22 1 16.9490 0.3339 0.0628 23 6 11.8380 1.6377 1.4383 24 6 11.0461 1.9019 0.1527 25 7 5.4752 1.0317 0.7671 26 8 4.3098 1.1240 1.0759 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 4.0356 1.1551 -2.1264 33 1 8.0746 0.8212 0.3555 34 1 9.3103 -0.1760 -1.9801 35 1 9.4584 1.5978 -1.9808 36 1 10.4287 -1.4132 -0.5282 37 1 11.6235 -1.2373 1.8216 38 1 12.7411 -1.5033 0.4605 39 1 14.7741 -2.4406 2.2275 40 1 11.1538 1.4367 2.2627 41 1 12.4559 2.5042 1.6739 42 1 11.7041 2.3431 -0.5961 43 1 10.2335 2.5957 0.3681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001236963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:55 Heat of formation + Delta-G solvation = 5.697806 kcal Electronic energy + Delta-G solvation = -25920.639702 eV Core-core repulsion = 21969.970662 eV Total energy + Delta-G solvation = -3950.669040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.27506 -40.94123 -39.38688 -38.90815 -36.56578 -35.25744 -34.64183 -33.75036 -32.61263 -31.46627 -28.88992 -28.72053 -26.70973 -26.42689 -25.06134 -24.37780 -23.77666 -22.80995 -21.37754 -19.56061 -19.16062 -19.06035 -18.17898 -17.45946 -17.23621 -17.21017 -16.96231 -16.69484 -16.38277 -16.20518 -15.73020 -15.44159 -15.28247 -15.01778 -14.80317 -14.54687 -14.01621 -13.83628 -13.69671 -13.30595 -13.21564 -13.00027 -12.82682 -12.64095 -12.59718 -12.38617 -12.27262 -12.15210 -11.74138 -11.66953 -11.66240 -11.29651 -10.76517 -10.70611 -10.70201 -10.32914 -9.72921 -8.77723 -7.90180 -5.31653 -0.10157 0.44725 1.04935 1.46075 1.47762 1.57287 1.75735 1.92269 2.04446 2.50034 2.79137 3.00109 3.27064 3.47269 3.56995 3.78788 3.79593 3.91038 4.00607 4.08116 4.37201 4.41075 4.48935 4.51133 4.57040 4.58677 4.66884 4.67273 4.77836 4.79360 4.86415 4.96766 5.04394 5.11514 5.17948 5.35251 5.44002 5.59362 5.70375 6.10205 6.10985 6.18696 6.31787 6.77024 6.91229 7.11182 7.80792 8.35167 9.18661 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.002053 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.852624 B =13638.529485 C =13889.497884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.143 3.857 4 C -0.027 4.027 5 C -0.162 4.162 6 C -0.048 4.048 7 C 0.597 3.403 8 O -0.553 6.553 9 N -0.698 5.698 10 C 0.166 3.834 11 C -0.144 4.144 12 C -0.138 4.138 13 C 0.204 3.796 14 N -0.614 5.614 15 C -0.258 4.258 16 H 0.071 0.929 17 C -0.055 4.055 18 N -0.940 5.940 19 Si 0.970 3.030 20 H -0.284 1.284 21 H -0.293 1.293 22 H -0.271 1.271 23 C 0.138 3.862 24 C -0.084 4.084 25 N -0.338 5.338 26 O 0.136 5.864 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.199 0.801 33 H 0.412 0.588 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.014 0.986 38 H 0.060 0.940 39 H 0.250 0.750 40 H 0.025 0.975 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.249 7.781 -5.328 30.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.066 3.934 4 C -0.091 4.091 5 C -0.184 4.184 6 C -0.205 4.205 7 C 0.382 3.618 8 O -0.431 6.431 9 N -0.349 5.349 10 C 0.044 3.956 11 C -0.144 4.144 12 C -0.159 4.159 13 C 0.079 3.921 14 N -0.338 5.338 15 C -0.387 4.387 16 H 0.089 0.911 17 C -0.250 4.250 18 N -0.587 5.587 19 Si 0.798 3.202 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.196 1.196 23 C 0.013 3.987 24 C -0.122 4.122 25 N -0.036 5.036 26 O 0.055 5.945 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.137 0.863 32 H 0.217 0.783 33 H 0.248 0.752 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.131 0.869 37 H 0.031 0.969 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -28.087 7.416 -5.188 29.509 hybrid contribution 0.867 -0.382 -0.151 0.959 sum -27.220 7.034 -5.339 28.617 Atomic orbital electron populations 1.23008 0.77856 1.04178 1.01911 1.87929 1.22573 1.27315 1.95905 1.20987 0.80405 0.86111 1.05863 1.24571 0.96473 1.03472 0.84538 1.22738 0.88727 1.04191 1.02742 1.23491 0.97090 1.09472 0.90484 1.17047 0.82080 0.76563 0.86110 1.90776 1.86986 1.51812 1.13505 1.45991 1.05356 1.72237 1.11337 1.20419 0.79756 1.02768 0.92691 1.20606 0.97874 0.95477 1.00483 1.23001 0.97624 0.97547 0.97718 1.19418 0.91069 0.88308 0.93331 1.44401 1.02004 1.05719 1.81697 1.19517 0.82528 0.95848 1.40857 0.91082 1.25772 1.02174 0.97305 0.99756 1.70175 1.36284 1.04722 1.47506 0.85238 0.80334 0.76585 0.78069 1.21082 1.21958 1.19600 1.21178 0.92854 0.90032 0.94683 1.20724 0.99097 0.94379 0.98047 1.74234 0.98268 1.15435 1.15685 1.84770 1.11109 1.64541 1.34037 0.91921 0.88926 0.92103 0.88007 0.86311 0.78346 0.75196 0.90990 0.90118 0.86858 0.96881 0.92213 0.94099 0.95727 0.92028 0.91305 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 113.37 1.25 1.38 16 2 O -0.42 -5.17 10.69 -148.98 -1.59 -6.77 16 3 C 0.14 1.10 6.50 71.23 0.46 1.57 16 4 C -0.03 -0.43 7.10 25.01 0.18 -0.25 16 5 C -0.16 -3.03 10.92 22.60 0.25 -2.79 16 6 C -0.05 -1.19 7.19 42.96 0.31 -0.88 16 7 C 0.60 17.16 7.85 86.93 0.68 17.84 16 8 O -0.55 -18.47 16.95 -3.69 -0.06 -18.53 16 9 N -0.70 -19.15 5.55 -469.23 -2.60 -21.76 16 10 C 0.17 4.76 5.66 85.63 0.48 5.24 16 11 C -0.14 -4.80 5.22 -15.14 -0.08 -4.88 16 12 C -0.14 -5.31 9.47 27.10 0.26 -5.05 16 13 C 0.20 10.03 5.23 85.42 0.45 10.47 16 14 N -0.61 -31.16 3.01 -703.02 -2.11 -33.27 16 15 C -0.26 -14.28 9.71 84.03 0.82 -13.46 16 16 H 0.07 3.81 7.88 -2.91 -0.02 3.78 16 17 C -0.06 -3.12 5.01 84.86 0.43 -2.69 16 18 N -0.94 -56.00 11.08 21.65 0.24 -55.76 16 19 Si 0.97 45.32 29.58 68.60 2.03 47.35 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 23 C 0.14 5.64 6.59 86.32 0.57 6.20 16 24 C -0.08 -2.78 5.95 29.71 0.18 -2.60 16 25 N -0.34 -8.32 11.84 -49.51 -0.59 -8.91 16 26 O 0.14 2.76 11.18 71.93 0.80 3.57 16 27 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 30 H 0.10 0.33 8.14 -2.39 -0.02 0.32 16 31 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.20 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.41 10.91 8.22 -92.71 -0.76 10.15 16 34 H 0.07 2.10 7.78 -2.39 -0.02 2.08 16 35 H 0.08 2.23 8.11 -2.38 -0.02 2.21 16 36 H 0.11 3.89 7.73 -2.91 -0.02 3.87 16 37 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 3.31 6.41 -2.39 -0.02 3.29 16 39 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 40 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 2.43 7.96 -2.39 -0.02 2.41 16 42 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 43 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -71.66 368.33 2.61 -69.05 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.27 Total: 14.92 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 6.22 Total: 10.10 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -5.06 Total: -119.70 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.85 Total: -21.73 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -71.66 2.61 -69.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001236963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.750 kcal (2) G-P(sol) polarization free energy of solvation -71.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds