Wall clock time and date at job start Tue Mar 31 2020 13:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99678 * 2 1 4 4 C 1.50700 * 109.47057 * 180.02562 * 3 2 1 5 5 N 1.29940 * 125.37954 * 89.99342 * 4 3 2 6 6 C 1.36073 * 108.47707 * 179.97438 * 5 4 3 7 7 C 1.47413 * 126.44686 * 179.97438 * 6 5 4 8 8 O 1.21615 * 119.99939 * 180.02562 * 7 6 5 9 9 N 1.34769 * 120.00284 * 0.04208 * 7 6 5 10 10 C 1.46507 * 120.00275 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.46812 * 179.97438 * 10 9 7 12 12 C 1.29455 * 117.69020 * 95.00770 * 11 10 9 13 13 C 1.50329 * 123.65183 * 180.85238 * 12 11 10 14 14 N 1.47007 * 109.16430 * 349.02167 * 13 12 11 15 15 C 1.36935 * 121.37250 * 222.96849 * 14 13 12 16 16 H 1.08000 * 119.99660 * 155.97692 * 15 14 13 17 17 C 1.38806 * 120.00026 * 335.97621 * 15 14 13 18 18 N 1.31618 * 120.00270 * 344.49464 * 17 15 14 19 19 Si 1.86807 * 119.99888 * 164.50030 * 17 15 14 20 20 H 1.48497 * 109.47369 * 94.45256 * 19 17 15 21 21 H 1.48504 * 109.46902 * 214.45320 * 19 17 15 22 22 H 1.48500 * 109.47020 * 334.45072 * 19 17 15 23 23 C 1.47341 * 117.24729 * 42.94321 * 14 13 12 24 24 C 1.49967 * 117.69824 * 274.73522 * 11 10 9 25 25 C 1.36099 * 107.10143 * 0.02562 * 6 5 4 26 26 O 1.34052 * 125.37606 * 269.97840 * 4 3 2 27 27 H 1.08999 * 109.47156 * 299.99630 * 1 2 3 28 28 H 1.08996 * 109.47143 * 60.00325 * 1 2 3 29 29 H 1.08999 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47098 * 60.00369 * 3 2 1 31 31 H 1.09000 * 109.47513 * 299.99738 * 3 2 1 32 32 H 0.97006 * 119.99909 * 0.02562 * 9 7 6 33 33 H 1.08997 * 109.46678 * 300.00201 * 10 9 7 34 34 H 1.09001 * 109.46836 * 60.00304 * 10 9 7 35 35 H 1.07997 * 118.17712 * 0.87709 * 12 11 10 36 36 H 1.09000 * 109.51987 * 108.92543 * 13 12 11 37 37 H 1.08996 * 109.52436 * 229.10999 * 13 12 11 38 38 H 0.97005 * 120.00157 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.77909 * 57.82010 * 23 14 13 40 40 H 1.09006 * 109.77336 * 178.61609 * 23 14 13 41 41 H 1.08990 * 109.31819 * 281.29436 * 24 11 10 42 42 H 1.09006 * 109.31086 * 40.72866 * 24 11 10 43 43 H 1.07992 * 126.52196 * 179.73575 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2620 1.1273 -1.0604 6 6 5.5601 1.0251 -0.6653 7 6 6.7387 0.9315 -1.5458 8 8 7.8520 0.8435 -1.0642 9 7 6.5826 0.9438 -2.8843 10 6 7.7540 0.8513 -3.7594 11 6 7.3096 0.8858 -5.1989 12 6 7.3170 2.0304 -5.8036 13 6 6.8837 2.2217 -7.2303 14 7 6.7214 0.9060 -7.8659 15 6 7.1774 0.6661 -9.1346 16 1 7.4093 -0.3425 -9.4433 17 6 7.3416 1.7192 -10.0238 18 7 6.7854 2.8853 -9.7728 19 14 8.3521 1.4813 -11.5769 20 1 7.4527 1.1215 -12.7024 21 1 9.0685 2.7415 -11.8992 22 1 9.3384 0.3918 -11.3637 23 6 6.0483 -0.1438 -7.0812 24 6 6.8958 -0.4093 -5.8319 25 6 5.5654 1.0244 0.6957 26 8 4.2866 1.1255 1.0921 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 5.6947 1.0146 -3.2685 33 1 8.4204 1.6915 -3.5642 34 1 8.2804 -0.0830 -3.5643 35 1 7.6535 2.8961 -5.2525 36 1 5.9346 2.7572 -7.2540 37 1 7.6398 2.7947 -7.7669 38 1 6.8998 3.6212 -10.3945 39 1 5.0529 0.1931 -6.7917 40 1 5.9719 -1.0554 -7.6739 41 1 7.7850 -0.9756 -6.1087 42 1 6.3105 -0.9887 -5.1178 43 1 6.4327 0.9520 1.3350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001318571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:54 Heat of formation + Delta-G solvation = -11.720139 kcal Electronic energy + Delta-G solvation = -26134.139361 eV Core-core repulsion = 22182.715022 eV Total energy + Delta-G solvation = -3951.424338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.76288 -39.57253 -38.40118 -37.72795 -35.21447 -34.93518 -32.84996 -31.83780 -30.84123 -29.70778 -28.27015 -27.14331 -26.16723 -24.81391 -23.44592 -22.69629 -21.87663 -21.05142 -20.61880 -18.63389 -17.62785 -17.58721 -16.92742 -16.40990 -16.20495 -16.19698 -15.80375 -15.61470 -15.21744 -14.85755 -14.40672 -13.91161 -13.75380 -13.61655 -13.38622 -13.29919 -12.96877 -12.90976 -12.27117 -12.08151 -12.03872 -11.58473 -11.55211 -11.34017 -11.15773 -10.91622 -10.72339 -10.46095 -10.35027 -10.32248 -10.22668 -9.81957 -9.59169 -9.46460 -8.96215 -8.67865 -8.05741 -6.73993 -5.79590 -3.18095 0.77789 1.57402 2.13203 2.56554 3.08395 3.22836 3.38155 3.45315 3.47903 3.49564 3.79754 4.36824 4.49808 4.55503 4.63293 4.77846 4.84356 4.92096 5.14967 5.17215 5.22941 5.31665 5.35946 5.40530 5.57475 5.66789 5.82615 5.93588 6.09476 6.18876 6.35986 6.42198 6.44300 6.52979 6.74884 6.89313 7.09067 7.17722 7.26317 7.33774 7.58724 7.73399 7.82767 8.13326 8.38267 9.19743 9.82603 10.40800 11.30969 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017256 B = 0.002460 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.197462 B =11380.872960 C =12414.274765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.161 3.839 4 C 0.192 3.808 5 N -0.434 5.434 6 C -0.069 4.069 7 C 0.598 3.402 8 O -0.543 6.543 9 N -0.699 5.699 10 C 0.156 3.844 11 C -0.167 4.167 12 C -0.122 4.122 13 C 0.194 3.806 14 N -0.595 5.595 15 C -0.245 4.245 16 H 0.069 0.931 17 C -0.002 4.002 18 N -0.910 5.910 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.144 3.856 24 C -0.090 4.090 25 C 0.021 3.979 26 O -0.191 6.191 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.411 0.589 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.094 0.906 38 H 0.254 0.746 39 H 0.024 0.976 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.140 -2.163 22.710 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.083 3.917 4 C -0.017 4.017 5 N -0.166 5.166 6 C -0.190 4.190 7 C 0.382 3.618 8 O -0.421 6.421 9 N -0.349 5.349 10 C 0.034 3.966 11 C -0.167 4.167 12 C -0.143 4.143 13 C 0.069 3.931 14 N -0.319 5.319 15 C -0.374 4.374 16 H 0.086 0.914 17 C -0.200 4.200 18 N -0.555 5.555 19 Si 0.734 3.266 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.017 3.983 24 C -0.129 4.129 25 C -0.053 4.053 26 O -0.076 6.076 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.247 0.753 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.468 -2.245 22.295 24.326 hybrid contribution 0.277 0.239 -0.247 0.441 sum -9.191 -2.005 22.048 23.971 Atomic orbital electron populations 1.22846 0.79192 1.03704 1.00628 1.87964 1.20912 1.25813 1.95615 1.20541 0.80691 0.86615 1.03822 1.25639 0.95389 1.02171 0.78493 1.70778 1.00946 1.15086 1.29782 1.21916 0.92178 1.11721 0.93160 1.16737 0.85918 0.76973 0.82123 1.90820 1.24324 1.51459 1.75536 1.46031 1.11888 1.72148 1.04858 1.20551 0.86698 1.02028 0.87306 1.20473 1.06480 0.96484 0.93298 1.23295 0.95395 0.95961 0.99665 1.19762 0.99655 0.88046 0.85627 1.44135 1.66458 1.08051 1.13222 1.19184 1.36728 0.93875 0.87630 0.91363 1.24986 1.00331 0.96864 0.97785 1.70011 1.45252 1.02750 1.37525 0.86245 0.80100 0.77087 0.83154 1.21509 1.21579 1.20479 1.20992 0.93137 0.92964 0.91170 1.20786 1.00250 0.93931 0.97954 1.25373 0.84823 0.99401 0.95744 1.84385 1.17059 1.68448 1.37699 0.93486 0.93127 0.88846 0.89849 0.88215 0.75306 0.91321 0.91250 0.88756 0.94059 0.88855 0.93632 0.95778 0.92457 0.91677 0.92847 0.74980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.36 10.69 -35.23 -0.38 -3.74 16 3 C 0.16 1.15 6.56 36.01 0.24 1.38 16 4 C 0.19 2.03 7.93 -13.08 -0.10 1.93 16 5 N -0.43 -5.57 11.06 -7.65 -0.08 -5.65 16 6 C -0.07 -0.89 6.99 -83.02 -0.58 -1.48 16 7 C 0.60 8.93 7.81 -12.53 -0.10 8.83 16 8 O -0.54 -9.24 16.89 5.26 0.09 -9.15 16 9 N -0.70 -10.29 5.54 -62.57 -0.35 -10.64 16 10 C 0.16 2.43 5.66 -5.19 -0.03 2.40 16 11 C -0.17 -2.93 5.22 -100.99 -0.53 -3.46 16 12 C -0.12 -2.36 9.47 -35.78 -0.34 -2.70 16 13 C 0.19 4.61 5.23 -5.10 -0.03 4.58 16 14 N -0.60 -14.93 3.01 -173.56 -0.52 -15.45 16 15 C -0.24 -6.71 9.71 -15.06 -0.15 -6.86 16 16 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 17 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 18 N -0.91 -26.18 11.08 55.49 0.61 -25.57 16 19 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.14 3.00 6.59 -3.44 -0.02 2.98 16 24 C -0.09 -1.61 5.95 -28.09 -0.17 -1.78 16 25 C 0.02 0.21 11.95 29.96 0.36 0.57 16 26 O -0.19 -1.92 10.73 6.49 0.07 -1.85 16 27 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.41 5.92 8.19 -40.82 -0.33 5.59 16 33 H 0.07 1.07 7.78 -51.93 -0.40 0.67 16 34 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 35 H 0.09 1.63 7.73 -52.49 -0.41 1.23 16 36 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.09 2.46 6.41 -51.93 -0.33 2.13 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.23 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -33.27 368.69 -6.54 -39.81 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.09 Total: 2.45 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -0.42 Total: 7.53 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.34 Total: -57.31 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.22 Total: -14.74 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.27 -6.54 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001318571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.089 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds