Wall clock time and date at job start Tue Mar 31 2020 13:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99678 * 2 1 4 4 C 1.50700 * 109.47057 * 180.02562 * 3 2 1 5 5 N 1.29940 * 125.37954 * 89.99342 * 4 3 2 6 6 C 1.36073 * 108.47707 * 179.97438 * 5 4 3 7 7 C 1.47413 * 126.44686 * 179.97438 * 6 5 4 8 8 O 1.21615 * 119.99939 * 180.02562 * 7 6 5 9 9 N 1.34769 * 120.00284 * 0.04208 * 7 6 5 10 10 C 1.46507 * 120.00275 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.46812 * 179.97438 * 10 9 7 12 12 C 1.29455 * 117.69020 * 95.00770 * 11 10 9 13 13 C 1.50329 * 123.65183 * 180.85238 * 12 11 10 14 14 N 1.47007 * 109.16430 * 349.02167 * 13 12 11 15 15 C 1.36935 * 121.37250 * 222.96849 * 14 13 12 16 16 H 1.08000 * 119.99660 * 155.97692 * 15 14 13 17 17 C 1.38806 * 120.00026 * 335.97621 * 15 14 13 18 18 N 1.31618 * 120.00270 * 344.49464 * 17 15 14 19 19 Si 1.86807 * 119.99888 * 164.50030 * 17 15 14 20 20 H 1.48497 * 109.47369 * 94.45256 * 19 17 15 21 21 H 1.48504 * 109.46902 * 214.45320 * 19 17 15 22 22 H 1.48500 * 109.47020 * 334.45072 * 19 17 15 23 23 C 1.47341 * 117.24729 * 42.94321 * 14 13 12 24 24 C 1.49967 * 117.69824 * 274.73522 * 11 10 9 25 25 C 1.36099 * 107.10143 * 0.02562 * 6 5 4 26 26 O 1.34052 * 125.37606 * 269.97840 * 4 3 2 27 27 H 1.08999 * 109.47156 * 299.99630 * 1 2 3 28 28 H 1.08996 * 109.47143 * 60.00325 * 1 2 3 29 29 H 1.08999 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47098 * 60.00369 * 3 2 1 31 31 H 1.09000 * 109.47513 * 299.99738 * 3 2 1 32 32 H 0.97006 * 119.99909 * 0.02562 * 9 7 6 33 33 H 1.08997 * 109.46678 * 300.00201 * 10 9 7 34 34 H 1.09001 * 109.46836 * 60.00304 * 10 9 7 35 35 H 1.07997 * 118.17712 * 0.87709 * 12 11 10 36 36 H 1.09000 * 109.51987 * 108.92543 * 13 12 11 37 37 H 1.08996 * 109.52436 * 229.10999 * 13 12 11 38 38 H 0.97005 * 120.00157 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.77909 * 57.82010 * 23 14 13 40 40 H 1.09006 * 109.77336 * 178.61609 * 23 14 13 41 41 H 1.08990 * 109.31819 * 281.29436 * 24 11 10 42 42 H 1.09006 * 109.31086 * 40.72866 * 24 11 10 43 43 H 1.07992 * 126.52196 * 179.73575 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2620 1.1273 -1.0604 6 6 5.5601 1.0251 -0.6653 7 6 6.7387 0.9315 -1.5458 8 8 7.8520 0.8435 -1.0642 9 7 6.5826 0.9438 -2.8843 10 6 7.7540 0.8513 -3.7594 11 6 7.3096 0.8858 -5.1989 12 6 7.3170 2.0304 -5.8036 13 6 6.8837 2.2217 -7.2303 14 7 6.7214 0.9060 -7.8659 15 6 7.1774 0.6661 -9.1346 16 1 7.4093 -0.3425 -9.4433 17 6 7.3416 1.7192 -10.0238 18 7 6.7854 2.8853 -9.7728 19 14 8.3521 1.4813 -11.5769 20 1 7.4527 1.1215 -12.7024 21 1 9.0685 2.7415 -11.8992 22 1 9.3384 0.3918 -11.3637 23 6 6.0483 -0.1438 -7.0812 24 6 6.8958 -0.4093 -5.8319 25 6 5.5654 1.0244 0.6957 26 8 4.2866 1.1255 1.0921 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 5.6947 1.0146 -3.2685 33 1 8.4204 1.6915 -3.5642 34 1 8.2804 -0.0830 -3.5643 35 1 7.6535 2.8961 -5.2525 36 1 5.9346 2.7572 -7.2540 37 1 7.6398 2.7947 -7.7669 38 1 6.8998 3.6212 -10.3945 39 1 5.0529 0.1931 -6.7917 40 1 5.9719 -1.0554 -7.6739 41 1 7.7850 -0.9756 -6.1087 42 1 6.3105 -0.9887 -5.1178 43 1 6.4327 0.9520 1.3350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001318571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:53 Heat of formation + Delta-G solvation = -37.480412 kcal Electronic energy + Delta-G solvation = -26135.256410 eV Core-core repulsion = 22182.715022 eV Total energy + Delta-G solvation = -3952.541388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.57600 -40.77398 -39.33656 -38.91136 -36.48110 -36.05125 -34.52351 -32.76906 -32.40924 -31.43567 -29.04028 -28.54818 -26.69069 -26.32878 -24.78283 -24.27243 -22.92616 -22.51362 -21.66910 -19.71982 -19.37362 -18.29157 -17.86786 -17.38616 -17.21548 -17.04460 -16.94491 -16.65920 -16.53955 -16.22653 -15.80253 -15.42375 -15.24212 -15.08224 -14.65741 -14.47383 -13.97642 -13.87666 -13.66140 -13.30570 -13.27739 -12.96762 -12.80613 -12.63000 -12.58893 -12.31510 -12.24242 -12.12199 -12.02331 -11.71914 -11.52297 -11.25666 -10.79713 -10.69113 -10.38626 -10.08843 -9.68873 -8.75883 -7.88671 -5.30024 -0.04272 0.69795 1.12188 1.42333 1.46847 1.48533 1.58393 2.10751 2.20385 2.51181 2.60154 3.18848 3.28517 3.59086 3.64089 3.68738 3.85730 3.94969 4.11268 4.23083 4.40348 4.41506 4.51499 4.53730 4.56858 4.60119 4.63711 4.70447 4.81484 4.86478 4.90102 4.92540 5.08003 5.19301 5.24899 5.38189 5.46486 5.60972 5.73860 6.01408 6.14153 6.20064 6.33427 6.48929 6.98762 7.12936 7.82504 8.36942 9.20165 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017256 B = 0.002460 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.197462 B =11380.872960 C =12414.274765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.158 3.842 4 C 0.193 3.807 5 N -0.462 5.462 6 C -0.103 4.103 7 C 0.601 3.399 8 O -0.568 6.568 9 N -0.698 5.698 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.140 4.140 13 C 0.205 3.795 14 N -0.615 5.615 15 C -0.257 4.257 16 H 0.071 0.929 17 C -0.055 4.055 18 N -0.940 5.940 19 Si 0.969 3.031 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.271 1.271 23 C 0.139 3.861 24 C -0.084 4.084 25 C 0.045 3.955 26 O -0.187 6.187 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.014 0.986 37 H 0.059 0.941 38 H 0.250 0.750 39 H 0.025 0.975 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.482 -3.077 24.685 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C 0.081 3.919 4 C -0.016 4.016 5 N -0.194 5.194 6 C -0.223 4.223 7 C 0.387 3.613 8 O -0.448 6.448 9 N -0.348 5.348 10 C 0.044 3.956 11 C -0.143 4.143 12 C -0.160 4.160 13 C 0.080 3.920 14 N -0.339 5.339 15 C -0.387 4.387 16 H 0.088 0.912 17 C -0.249 4.249 18 N -0.586 5.586 19 Si 0.797 3.203 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.196 1.196 23 C 0.014 3.986 24 C -0.123 4.123 25 C -0.030 4.030 26 O -0.072 6.072 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.249 0.751 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -9.832 -3.183 24.284 26.391 hybrid contribution 0.277 0.456 -0.778 0.943 sum -9.555 -2.727 23.506 25.520 Atomic orbital electron populations 1.23031 0.77410 1.04427 1.01959 1.87904 1.22900 1.26752 1.95913 1.20841 0.78623 0.86509 1.05890 1.26349 0.96593 1.00672 0.78028 1.70732 1.01180 1.16415 1.31055 1.21744 0.91814 1.14775 0.93971 1.16917 0.86245 0.76067 0.82049 1.90799 1.25397 1.52710 1.75871 1.45918 1.11570 1.72331 1.04959 1.20371 0.86993 1.02525 0.85745 1.20598 1.03782 0.95631 0.94248 1.22984 0.97927 0.97695 0.97406 1.19408 0.97484 0.87176 0.87916 1.44412 1.67108 1.09179 1.13181 1.19518 1.36417 0.94031 0.88741 0.91169 1.25751 1.01582 0.96736 1.00864 1.70172 1.46589 1.03377 1.38505 0.85236 0.78616 0.76866 0.79590 1.21223 1.21899 1.19566 1.21162 0.93483 0.91929 0.92048 1.20715 1.00155 0.94354 0.97040 1.25938 0.85510 0.96399 0.95130 1.84430 1.17020 1.68185 1.37556 0.91521 0.92413 0.88524 0.86690 0.87194 0.75086 0.91118 0.90578 0.86824 0.96879 0.92254 0.94093 0.95684 0.92145 0.91444 0.89946 0.72012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.42 -6.56 10.69 -148.98 -1.59 -8.15 16 3 C 0.16 1.93 6.56 71.24 0.47 2.39 16 4 C 0.19 3.74 7.93 88.39 0.70 4.44 16 5 N -0.46 -11.30 11.06 -293.02 -3.24 -14.54 16 6 C -0.10 -2.54 6.99 40.41 0.28 -2.25 16 7 C 0.60 17.14 7.81 86.66 0.68 17.82 16 8 O -0.57 -18.49 16.89 -4.08 -0.07 -18.56 16 9 N -0.70 -19.53 5.54 -470.11 -2.61 -22.14 16 10 C 0.17 4.86 5.66 85.63 0.48 5.34 16 11 C -0.14 -4.80 5.22 -15.14 -0.08 -4.88 16 12 C -0.14 -5.37 9.47 27.11 0.26 -5.12 16 13 C 0.21 10.08 5.23 85.42 0.45 10.53 16 14 N -0.61 -31.29 3.01 -703.02 -2.11 -33.40 16 15 C -0.26 -14.28 9.71 84.03 0.82 -13.46 16 16 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 17 C -0.05 -3.07 5.01 84.86 0.42 -2.65 16 18 N -0.94 -55.78 11.08 21.65 0.24 -55.54 16 19 Si 0.97 45.27 29.58 68.60 2.03 47.30 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 C 0.14 5.74 6.59 86.31 0.57 6.31 16 24 C -0.08 -2.85 5.95 29.71 0.18 -2.67 16 25 C 0.04 0.81 11.95 67.32 0.80 1.61 16 26 O -0.19 -3.34 10.73 0.31 0.00 -3.34 16 27 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.41 11.39 8.19 -92.70 -0.76 10.63 16 33 H 0.07 2.08 7.78 -2.39 -0.02 2.06 16 34 H 0.08 2.18 8.11 -2.39 -0.02 2.16 16 35 H 0.11 3.89 7.73 -2.91 -0.02 3.87 16 36 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 3.28 6.41 -2.39 -0.02 3.26 16 38 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 39 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 2.42 7.96 -2.38 -0.02 2.40 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 43 H 0.26 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -72.82 368.69 0.20 -72.61 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.27 Total: 16.87 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 7.28 Total: 18.87 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -7.72 Total: -125.62 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -1.66 Total: -30.04 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -72.82 0.20 -72.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001318571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.135 kcal (2) G-P(sol) polarization free energy of solvation -72.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds