Wall clock time and date at job start Tue Mar 31 2020 13:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00124 * 2 1 4 4 C 1.50702 * 109.46774 * 179.97438 * 3 2 1 5 5 N 1.30019 * 127.33262 * 90.03110 * 4 3 2 6 6 O 1.20658 * 112.30164 * 179.97438 * 5 4 3 7 7 C 1.33495 * 113.15566 * 359.97438 * 6 5 4 8 8 C 1.37366 * 106.34313 * 359.74564 * 7 6 5 9 9 C 1.47396 * 128.56845 * 180.23383 * 8 7 6 10 10 O 1.21605 * 120.00078 * 180.16413 * 9 8 7 11 11 N 1.34777 * 119.99907 * 0.16478 * 9 8 7 12 12 C 1.46501 * 119.99785 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.46636 * 179.97438 * 12 11 9 14 14 C 1.29453 * 117.69688 * 95.00535 * 13 12 11 15 15 C 1.50319 * 123.65507 * 180.85721 * 14 13 12 16 16 N 1.47013 * 109.16641 * 349.02015 * 15 14 13 17 17 C 1.36934 * 121.37291 * 222.97436 * 16 15 14 18 18 H 1.08001 * 119.99840 * 155.96858 * 17 16 15 19 19 C 1.38810 * 120.00042 * 335.96402 * 17 16 15 20 20 N 1.31617 * 120.00291 * 344.52199 * 19 17 16 21 21 Si 1.86806 * 119.99863 * 164.52091 * 19 17 16 22 22 H 1.48501 * 109.46890 * 90.00185 * 21 19 17 23 23 H 1.48499 * 109.47021 * 209.99591 * 21 19 17 24 24 H 1.48495 * 109.47310 * 330.00490 * 21 19 17 25 25 C 1.47332 * 117.24828 * 42.94734 * 16 15 14 26 26 C 1.49980 * 117.69648 * 274.73894 * 13 12 11 27 27 H 1.08993 * 109.47699 * 300.00672 * 1 2 3 28 28 H 1.09008 * 109.47096 * 60.00323 * 1 2 3 29 29 H 1.09002 * 109.47453 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47192 * 59.99810 * 3 2 1 31 31 H 1.09001 * 109.46927 * 299.99312 * 3 2 1 32 32 H 1.07999 * 126.83101 * 180.02562 * 7 6 5 33 33 H 0.97005 * 119.99950 * 359.97438 * 11 9 8 34 34 H 1.08988 * 109.47224 * 299.99843 * 12 11 9 35 35 H 1.09001 * 109.46666 * 60.00711 * 12 11 9 36 36 H 1.08001 * 118.17361 * 0.87446 * 14 13 12 37 37 H 1.08996 * 109.52672 * 108.92649 * 15 14 13 38 38 H 1.09001 * 109.52459 * 229.11600 * 15 14 13 39 39 H 0.96998 * 119.99939 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.77968 * 57.81127 * 25 16 15 41 41 H 1.08996 * 109.78000 * 178.62112 * 25 16 15 42 42 H 1.09001 * 109.31458 * 281.29549 * 26 13 12 43 43 H 1.09004 * 109.30884 * 40.71938 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 7 4.2990 1.1244 -1.0329 6 8 5.4606 1.0327 -0.7194 7 6 5.6481 1.0182 0.6022 8 6 4.4020 1.1228 1.1706 9 6 4.0440 1.1587 2.6000 10 8 2.8781 1.2526 2.9326 11 7 5.0089 1.0876 3.5383 12 6 4.6531 1.1239 4.9590 13 6 5.9048 1.0287 5.7927 14 6 6.4402 2.1338 6.2026 15 6 7.6972 2.1959 7.0246 16 7 8.0383 0.8429 7.4878 17 6 8.4563 0.6131 8.7713 18 1 8.3330 -0.3650 9.2124 19 6 9.0387 1.6372 9.5055 20 7 9.4677 2.7221 8.8962 21 14 9.2136 1.4755 11.3583 22 1 10.5169 0.8400 11.6789 23 1 9.1534 2.8225 11.9805 24 1 8.1097 0.6355 11.8883 25 6 7.9110 -0.2555 6.5141 26 6 6.4391 -0.3398 6.0944 27 1 -0.3634 0.5139 0.8898 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 6.5923 0.9442 1.1213 33 1 5.9389 1.0123 3.2729 34 1 4.1385 2.0586 5.1809 35 1 3.9979 0.2843 5.1909 36 1 5.9567 3.0630 5.9395 37 1 8.5116 2.5885 6.4159 38 1 7.5381 2.8460 7.8849 39 1 9.8743 3.4378 9.4092 40 1 8.5355 -0.0515 5.6443 41 1 8.2158 -1.1947 6.9757 42 1 5.8556 -0.7852 6.9001 43 1 6.3550 -0.9638 5.2046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001369427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:21 Heat of formation + Delta-G solvation = 25.592522 kcal Electronic energy + Delta-G solvation = -26411.118965 eV Core-core repulsion = 22461.312625 eV Total energy + Delta-G solvation = -3949.806340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.26986 -39.72302 -38.19697 -37.78807 -35.08225 -34.29089 -33.18567 -32.24330 -30.88328 -29.79358 -28.66954 -27.23699 -26.04305 -25.06046 -23.74644 -22.79765 -21.65991 -21.20702 -20.69831 -18.74303 -18.10787 -17.71448 -17.15687 -16.57288 -16.19942 -15.92822 -15.81740 -15.45146 -15.25556 -14.93471 -14.53297 -14.09341 -13.76839 -13.66850 -13.44797 -13.04052 -12.85001 -12.67833 -12.34282 -12.13523 -11.85799 -11.77443 -11.62927 -11.44640 -10.97144 -10.77231 -10.52031 -10.49679 -10.38684 -10.29719 -10.07595 -9.96483 -9.89044 -9.67712 -9.12391 -8.74674 -8.15400 -6.81276 -5.85924 -3.24704 0.76783 1.32146 2.38761 2.69690 3.00409 3.27275 3.34291 3.41594 3.43833 3.48264 3.80308 4.11272 4.44538 4.51227 4.70661 4.87567 4.93569 5.05255 5.09011 5.12918 5.26683 5.27692 5.33505 5.39546 5.46952 5.52126 5.73453 5.85238 5.99124 6.08506 6.24844 6.29029 6.43505 6.65743 6.74974 6.79317 7.07633 7.17161 7.23253 7.38795 7.65716 7.75327 7.82183 8.03499 8.31791 9.13312 9.75989 10.33402 11.24630 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026625 B = 0.002339 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.382604 B =11965.551973 C =12461.503616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.142 3.858 4 C 0.064 3.936 5 N -0.339 5.339 6 O 0.106 5.894 7 C -0.005 4.005 8 C -0.236 4.236 9 C 0.591 3.409 10 O -0.530 6.530 11 N -0.712 5.712 12 C 0.159 3.841 13 C -0.169 4.169 14 C -0.121 4.121 15 C 0.193 3.807 16 N -0.595 5.595 17 C -0.247 4.247 18 H 0.069 0.931 19 C -0.001 4.001 20 N -0.910 5.910 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.144 3.856 26 C -0.091 4.091 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.231 0.769 33 H 0.400 0.600 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.042 0.958 38 H 0.094 0.906 39 H 0.254 0.746 40 H 0.023 0.977 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.216 -2.150 -17.660 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.065 3.935 4 C -0.099 4.099 5 N -0.045 5.045 6 O 0.043 5.957 7 C -0.087 4.087 8 C -0.244 4.244 9 C 0.377 3.623 10 O -0.408 6.408 11 N -0.362 5.362 12 C 0.037 3.963 13 C -0.169 4.169 14 C -0.142 4.142 15 C 0.068 3.932 16 N -0.318 5.318 17 C -0.376 4.376 18 H 0.086 0.914 19 C -0.199 4.199 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.017 3.983 26 C -0.130 4.130 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.247 0.753 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.081 -2.103 -18.607 22.284 hybrid contribution 0.377 0.242 1.699 1.757 sum -11.704 -1.861 -16.907 20.647 Atomic orbital electron populations 1.22772 0.80021 1.03145 1.00302 1.87909 1.20347 1.26289 1.95528 1.20566 0.84157 0.86193 1.02576 1.24354 0.97429 1.01379 0.86761 1.73680 0.89529 1.17716 1.23536 1.84595 1.21591 1.66237 1.23267 1.26506 1.00450 0.97984 0.83800 1.22390 0.92741 1.13465 0.95768 1.16827 0.85602 0.76980 0.82926 1.90787 1.18411 1.49716 1.81871 1.46028 1.09519 1.74026 1.06668 1.20517 0.96040 1.02099 0.77651 1.20487 0.97401 0.96332 1.02716 1.23319 0.98271 0.96364 0.96229 1.19775 0.89047 0.88036 0.96347 1.44127 1.77111 1.02058 1.08543 1.19168 1.32796 0.97718 0.87918 0.91355 1.24987 0.98328 0.97919 0.98649 1.69997 1.42866 1.08487 1.34157 0.86260 0.77953 0.76952 0.85409 1.21405 1.21544 1.20518 1.20989 0.92011 0.92643 0.92631 1.20802 0.99467 0.93009 0.99692 0.93375 0.93942 0.89274 0.89267 0.91386 0.75327 0.76542 0.91320 0.91221 0.88714 0.94008 0.88812 0.93565 0.95864 0.92423 0.91638 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.73 10.69 -35.23 -0.38 -5.11 16 3 C 0.14 1.60 6.20 36.01 0.22 1.82 16 4 C 0.06 0.78 7.21 -79.76 -0.58 0.20 16 5 N -0.34 -4.06 12.01 34.78 0.42 -3.64 16 6 O 0.11 1.04 11.06 18.65 0.21 1.25 16 7 C -0.01 -0.04 11.85 30.42 0.36 0.32 16 8 C -0.24 -2.66 6.47 -102.89 -0.67 -3.33 16 9 C 0.59 7.76 7.81 -12.53 -0.10 7.66 16 10 O -0.53 -8.66 15.69 5.27 0.08 -8.57 16 11 N -0.71 -8.32 5.54 -62.58 -0.35 -8.66 16 12 C 0.16 2.17 5.66 -5.19 -0.03 2.15 16 13 C -0.17 -2.64 5.22 -100.99 -0.53 -3.17 16 14 C -0.12 -2.12 9.47 -35.78 -0.34 -2.46 16 15 C 0.19 4.31 5.23 -5.10 -0.03 4.28 16 16 N -0.60 -14.16 3.01 -173.57 -0.52 -14.68 16 17 C -0.25 -6.53 9.71 -15.06 -0.15 -6.68 16 18 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 19 C 0.00 -0.03 5.01 -17.43 -0.09 -0.11 16 20 N -0.91 -25.42 11.08 55.49 0.61 -24.80 16 21 Si 0.90 21.20 29.58 -169.99 -5.03 16.17 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.14 2.77 6.59 -3.44 -0.02 2.75 16 26 C -0.09 -1.46 5.95 -28.08 -0.17 -1.63 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.28 8.14 -51.92 -0.42 -0.15 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.02 7.09 -51.93 -0.37 0.65 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.23 0.76 7.68 -52.49 -0.40 0.36 16 33 H 0.40 3.73 7.65 -40.82 -0.31 3.42 16 34 H 0.07 0.97 7.78 -51.94 -0.40 0.57 16 35 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 36 H 0.09 1.48 7.73 -52.49 -0.41 1.08 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 2.37 6.41 -51.93 -0.33 2.04 16 39 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.10 7.96 -51.93 -0.41 0.68 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -32.68 365.11 -6.43 -39.10 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.99 Total: 0.24 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -0.99 Total: 3.20 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.16 Total: -51.79 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.09 Total: -12.43 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.68 -6.43 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001369427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.697 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds