Wall clock time and date at job start Tue Mar 31 2020 13:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00124 * 2 1 4 4 C 1.50702 * 109.46774 * 179.97438 * 3 2 1 5 5 N 1.30019 * 127.33262 * 90.03110 * 4 3 2 6 6 O 1.20658 * 112.30164 * 179.97438 * 5 4 3 7 7 C 1.33495 * 113.15566 * 359.97438 * 6 5 4 8 8 C 1.37366 * 106.34313 * 359.74564 * 7 6 5 9 9 C 1.47396 * 128.56845 * 180.23383 * 8 7 6 10 10 O 1.21605 * 120.00078 * 180.16413 * 9 8 7 11 11 N 1.34777 * 119.99907 * 0.16478 * 9 8 7 12 12 C 1.46501 * 119.99785 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.46636 * 179.97438 * 12 11 9 14 14 C 1.29453 * 117.69688 * 95.00535 * 13 12 11 15 15 C 1.50319 * 123.65507 * 180.85721 * 14 13 12 16 16 N 1.47013 * 109.16641 * 349.02015 * 15 14 13 17 17 C 1.36934 * 121.37291 * 222.97436 * 16 15 14 18 18 H 1.08001 * 119.99840 * 155.96858 * 17 16 15 19 19 C 1.38810 * 120.00042 * 335.96402 * 17 16 15 20 20 N 1.31617 * 120.00291 * 344.52199 * 19 17 16 21 21 Si 1.86806 * 119.99863 * 164.52091 * 19 17 16 22 22 H 1.48501 * 109.46890 * 90.00185 * 21 19 17 23 23 H 1.48499 * 109.47021 * 209.99591 * 21 19 17 24 24 H 1.48495 * 109.47310 * 330.00490 * 21 19 17 25 25 C 1.47332 * 117.24828 * 42.94734 * 16 15 14 26 26 C 1.49980 * 117.69648 * 274.73894 * 13 12 11 27 27 H 1.08993 * 109.47699 * 300.00672 * 1 2 3 28 28 H 1.09008 * 109.47096 * 60.00323 * 1 2 3 29 29 H 1.09002 * 109.47453 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47192 * 59.99810 * 3 2 1 31 31 H 1.09001 * 109.46927 * 299.99312 * 3 2 1 32 32 H 1.07999 * 126.83101 * 180.02562 * 7 6 5 33 33 H 0.97005 * 119.99950 * 359.97438 * 11 9 8 34 34 H 1.08988 * 109.47224 * 299.99843 * 12 11 9 35 35 H 1.09001 * 109.46666 * 60.00711 * 12 11 9 36 36 H 1.08001 * 118.17361 * 0.87446 * 14 13 12 37 37 H 1.08996 * 109.52672 * 108.92649 * 15 14 13 38 38 H 1.09001 * 109.52459 * 229.11600 * 15 14 13 39 39 H 0.96998 * 119.99939 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.77968 * 57.81127 * 25 16 15 41 41 H 1.08996 * 109.78000 * 178.62112 * 25 16 15 42 42 H 1.09001 * 109.31458 * 281.29549 * 26 13 12 43 43 H 1.09004 * 109.30884 * 40.71938 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 7 4.2990 1.1244 -1.0329 6 8 5.4606 1.0327 -0.7194 7 6 5.6481 1.0182 0.6022 8 6 4.4020 1.1228 1.1706 9 6 4.0440 1.1587 2.6000 10 8 2.8781 1.2526 2.9326 11 7 5.0089 1.0876 3.5383 12 6 4.6531 1.1239 4.9590 13 6 5.9048 1.0287 5.7927 14 6 6.4402 2.1338 6.2026 15 6 7.6972 2.1959 7.0246 16 7 8.0383 0.8429 7.4878 17 6 8.4563 0.6131 8.7713 18 1 8.3330 -0.3650 9.2124 19 6 9.0387 1.6372 9.5055 20 7 9.4677 2.7221 8.8962 21 14 9.2136 1.4755 11.3583 22 1 10.5169 0.8400 11.6789 23 1 9.1534 2.8225 11.9805 24 1 8.1097 0.6355 11.8883 25 6 7.9110 -0.2555 6.5141 26 6 6.4391 -0.3398 6.0944 27 1 -0.3634 0.5139 0.8898 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 6.5923 0.9442 1.1213 33 1 5.9389 1.0123 3.2729 34 1 4.1385 2.0586 5.1809 35 1 3.9979 0.2843 5.1909 36 1 5.9567 3.0630 5.9395 37 1 8.5116 2.5885 6.4159 38 1 7.5381 2.8460 7.8849 39 1 9.8743 3.4378 9.4092 40 1 8.5355 -0.0515 5.6443 41 1 8.2158 -1.1947 6.9757 42 1 5.8556 -0.7852 6.9001 43 1 6.3550 -0.9638 5.2046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001369427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:21 Heat of formation + Delta-G solvation = 2.792378 kcal Electronic energy + Delta-G solvation = -26412.107653 eV Core-core repulsion = 22461.312625 eV Total energy + Delta-G solvation = -3950.795028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.08261 -40.78386 -39.32021 -38.94274 -36.44236 -35.12608 -34.62954 -33.31076 -32.39357 -31.38270 -29.48543 -28.63368 -26.85473 -26.35767 -25.03512 -24.28913 -22.81078 -22.45301 -21.64390 -19.70979 -19.36029 -18.92096 -18.09615 -17.35862 -17.31760 -17.18046 -16.96758 -16.73676 -16.29112 -16.23115 -15.70385 -15.41353 -15.26748 -15.08303 -14.62200 -14.41401 -13.93457 -13.65436 -13.56361 -13.38867 -13.24665 -12.90814 -12.78509 -12.56983 -12.56952 -12.54092 -12.23075 -12.09114 -11.68519 -11.42929 -11.30877 -11.20965 -10.87452 -10.77538 -10.66739 -10.15030 -9.64287 -8.72305 -7.87294 -5.27542 0.02805 0.48698 1.15495 1.47484 1.49696 1.58362 1.93759 2.06493 2.32893 2.52412 2.66823 3.02274 3.30277 3.36205 3.64763 3.72320 3.84424 3.95968 3.99861 4.12125 4.25650 4.45948 4.46609 4.50497 4.57404 4.59596 4.62798 4.70477 4.78075 4.79579 4.87328 4.95366 5.13724 5.24828 5.29114 5.43403 5.52125 5.63555 5.79356 6.00824 6.18950 6.35935 6.44775 7.05958 7.10007 7.15832 7.86362 8.38898 9.21083 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026625 B = 0.002339 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.382604 B =11965.551973 C =12461.503616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.142 3.858 4 C 0.044 3.956 5 N -0.357 5.357 6 O 0.110 5.890 7 C 0.034 3.966 8 C -0.267 4.267 9 C 0.596 3.404 10 O -0.568 6.568 11 N -0.700 5.700 12 C 0.170 3.830 13 C -0.139 4.139 14 C -0.137 4.137 15 C 0.203 3.797 16 N -0.616 5.616 17 C -0.255 4.255 18 H 0.069 0.931 19 C -0.054 4.054 20 N -0.938 5.938 21 Si 0.964 3.036 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.273 1.273 25 C 0.138 3.862 26 C -0.085 4.085 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.279 0.721 33 H 0.415 0.585 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.017 0.983 38 H 0.055 0.945 39 H 0.249 0.751 40 H 0.033 0.967 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.467 -3.290 -18.779 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.065 3.935 4 C -0.118 4.118 5 N -0.063 5.063 6 O 0.048 5.952 7 C -0.047 4.047 8 C -0.274 4.274 9 C 0.383 3.617 10 O -0.449 6.449 11 N -0.351 5.351 12 C 0.047 3.953 13 C -0.140 4.140 14 C -0.158 4.158 15 C 0.078 3.922 16 N -0.340 5.340 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.248 4.248 20 N -0.585 5.585 21 Si 0.793 3.207 22 H -0.212 1.212 23 H -0.220 1.220 24 H -0.198 1.198 25 C 0.013 3.987 26 C -0.124 4.124 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.294 0.706 33 H 0.252 0.748 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.035 0.965 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.325 -3.270 -19.760 23.517 hybrid contribution 0.476 0.508 1.981 2.100 sum -11.849 -2.761 -17.779 21.544 Atomic orbital electron populations 1.22969 0.78350 1.04243 1.01215 1.87857 1.22332 1.27014 1.95697 1.20593 0.84135 0.85969 1.02846 1.24635 0.98061 1.01747 0.87372 1.73681 0.90163 1.18572 1.23871 1.84578 1.20769 1.65677 1.24200 1.27319 1.00931 0.93764 0.82710 1.22226 0.94056 1.16534 0.94625 1.16974 0.85067 0.76029 0.83655 1.90772 1.20018 1.51550 1.82527 1.45770 1.10163 1.73613 1.05557 1.20275 0.94541 1.02167 0.78346 1.20555 0.96979 0.95501 1.00923 1.22962 0.97348 0.98173 0.97300 1.19425 0.90663 0.86909 0.95183 1.44414 1.77283 1.03567 1.08745 1.19483 1.31907 0.97649 0.89473 0.91338 1.25690 0.98884 0.97963 1.02311 1.70147 1.44085 1.09067 1.35195 0.85319 0.77909 0.76513 0.80979 1.21184 1.22043 1.19814 1.21193 0.94381 0.91155 0.91962 1.20740 0.96803 0.93719 1.01099 0.93354 0.92123 0.88141 0.90154 0.89868 0.70566 0.74830 0.91545 0.91094 0.86796 0.96486 0.92651 0.94156 0.94855 0.92492 0.92068 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -9.98 10.69 -148.98 -1.59 -11.57 16 3 C 0.14 3.14 6.20 71.24 0.44 3.58 16 4 C 0.04 1.03 7.21 45.16 0.33 1.36 16 5 N -0.36 -7.99 12.01 -44.77 -0.54 -8.53 16 6 O 0.11 1.86 11.06 76.97 0.85 2.71 16 7 C 0.03 0.42 11.85 67.61 0.80 1.22 16 8 C -0.27 -5.42 6.47 -18.74 -0.12 -5.54 16 9 C 0.60 14.41 7.81 86.65 0.68 15.08 16 10 O -0.57 -18.04 15.69 -4.05 -0.06 -18.11 16 11 N -0.70 -14.09 5.54 -470.15 -2.61 -16.69 16 12 C 0.17 4.16 5.66 85.63 0.48 4.64 16 13 C -0.14 -3.99 5.22 -15.13 -0.08 -4.07 16 14 C -0.14 -4.66 9.47 27.11 0.26 -4.40 16 15 C 0.20 9.23 5.23 85.42 0.45 9.67 16 16 N -0.62 -29.28 3.01 -703.04 -2.11 -31.40 16 17 C -0.25 -13.58 9.71 84.03 0.82 -12.77 16 18 H 0.07 3.56 7.88 -2.91 -0.02 3.53 16 19 C -0.05 -2.92 5.01 84.86 0.43 -2.50 16 20 N -0.94 -53.84 11.08 21.65 0.24 -53.60 16 21 Si 0.96 44.09 29.58 68.60 2.03 46.12 16 22 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 25 C 0.14 5.09 6.59 86.32 0.57 5.66 16 26 C -0.08 -2.47 5.95 29.72 0.18 -2.30 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.87 7.09 -2.39 -0.02 1.85 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.28 0.25 7.68 -2.91 -0.02 0.23 16 33 H 0.41 5.93 7.65 -92.70 -0.71 5.22 16 34 H 0.07 1.72 7.78 -2.39 -0.02 1.70 16 35 H 0.07 1.80 8.11 -2.39 -0.02 1.78 16 36 H 0.11 3.41 7.73 -2.91 -0.02 3.39 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 2.91 6.41 -2.39 -0.02 2.89 16 39 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 40 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 2.07 7.96 -2.39 -0.02 2.05 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -73.15 365.11 3.00 -70.14 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.33 Total: 9.58 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 6.47 Total: 11.33 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -5.02 Total: -110.21 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.80 Total: -26.96 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -73.15 3.00 -70.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001369427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.936 kcal (2) G-P(sol) polarization free energy of solvation -73.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds