Wall clock time and date at job start Tue Mar 31 2020 13:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.36014 * 116.99766 * 2 1 4 4 C 1.35851 * 120.31373 * 359.97438 * 3 2 1 5 5 N 1.35447 * 120.77232 * 180.02562 * 4 3 2 6 6 H 0.97004 * 119.28746 * 179.97438 * 5 4 3 7 7 C 1.36424 * 121.41272 * 359.97438 * 5 4 3 8 8 C 1.48072 * 119.72010 * 179.97438 * 7 5 4 9 9 O 1.21512 * 119.99767 * 179.97438 * 8 7 5 10 10 N 1.34777 * 119.99838 * 0.02562 * 8 7 5 11 11 C 1.46495 * 120.00118 * 179.97438 * 10 8 7 12 12 C 1.53039 * 109.46476 * 204.99626 * 11 10 8 13 13 C 1.53192 * 109.31624 * 178.61195 * 12 11 10 14 14 N 1.46925 * 108.89163 * 54.56131 * 13 12 11 15 15 C 1.36940 * 120.62821 * 126.46045 * 14 13 12 16 16 H 1.08000 * 119.99751 * 331.92858 * 15 14 13 17 17 C 1.38810 * 120.00078 * 151.92771 * 15 14 13 18 18 N 1.31619 * 119.99689 * 343.17980 * 17 15 14 19 19 Si 1.86795 * 119.99988 * 163.18147 * 17 15 14 20 20 H 1.48509 * 109.47304 * 59.99932 * 19 17 15 21 21 H 1.48501 * 109.47440 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47535 * 299.99868 * 19 17 15 23 23 C 1.46954 * 118.71946 * 306.64559 * 14 13 12 24 24 C 1.53044 * 109.46278 * 84.92375 * 11 10 8 25 25 C 1.36182 * 120.56210 * 0.25290 * 7 5 4 26 26 C 1.41576 * 120.31033 * 180.02562 * 3 2 1 27 27 O 1.22257 * 120.65478 * 0.02562 * 26 3 2 28 28 H 1.08995 * 109.46924 * 59.99989 * 1 2 3 29 29 H 1.08999 * 109.46965 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47157 * 300.00129 * 1 2 3 31 31 H 1.07996 * 119.61392 * 0.02562 * 4 3 2 32 32 H 0.96996 * 119.99854 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.44555 * 324.96623 * 11 10 8 34 34 H 1.09005 * 109.49298 * 58.66180 * 12 11 10 35 35 H 1.08998 * 109.49763 * 298.56780 * 12 11 10 36 36 H 1.08997 * 109.58838 * 174.42439 * 13 12 11 37 37 H 1.09002 * 109.58672 * 294.71002 * 13 12 11 38 38 H 0.97000 * 119.99637 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47125 * 293.56762 * 23 14 13 40 40 H 1.09000 * 109.71403 * 173.28134 * 23 14 13 41 41 H 1.09000 * 109.50000 * 301.34377 * 24 11 10 42 42 H 1.09003 * 109.49095 * 61.43586 * 24 11 10 43 43 H 1.07995 * 120.40391 * 179.71875 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3553 -0.0005 5 7 1.9180 3.5670 -0.0010 6 1 1.3732 4.3696 -0.0018 7 6 3.2773 3.6829 -0.0006 8 6 3.8995 5.0266 -0.0017 9 8 5.1097 5.1357 -0.0008 10 7 3.1235 6.1285 -0.0028 11 6 3.7390 7.4579 -0.0034 12 6 2.7662 8.4705 0.6053 13 6 3.4263 9.8526 0.6348 14 7 3.8805 10.1919 -0.7206 15 6 3.5028 11.3696 -1.3087 16 1 2.5675 11.8346 -1.0341 17 6 4.3220 11.9656 -2.2576 18 7 5.5834 11.6035 -2.3586 19 14 3.6343 13.2815 -3.3910 20 1 3.1356 14.4217 -2.5805 21 1 4.7039 13.7555 -4.3056 22 1 2.5167 12.7143 -4.1875 23 6 4.7444 9.2414 -1.4345 24 6 4.0697 7.8661 -1.4408 25 6 4.0669 2.5734 -0.0047 26 6 3.4599 1.2937 -0.0005 27 8 4.1430 0.2798 -0.0015 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2344 2.2973 -0.0005 32 1 2.1575 6.0413 -0.0031 33 1 4.6549 7.4340 0.5871 34 1 2.5130 8.1665 1.6210 35 1 1.8600 8.5129 0.0012 36 1 2.7044 10.5951 0.9749 37 1 4.2798 9.8356 1.3126 38 1 6.1559 12.0203 -3.0215 39 1 5.7070 9.1738 -0.9275 40 1 4.8945 9.5794 -2.4598 41 1 4.7441 7.1319 -1.8815 42 1 3.1511 7.9141 -2.0257 43 1 5.1427 2.6681 -0.0088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003313300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:04 Heat of formation + Delta-G solvation = -42.256307 kcal Electronic energy + Delta-G solvation = -26755.809407 eV Core-core repulsion = 22803.060921 eV Total energy + Delta-G solvation = -3952.748486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70600 -40.02197 -38.46738 -37.87824 -37.47061 -34.79677 -32.45897 -31.85155 -31.08927 -30.16884 -29.56570 -28.00099 -25.64549 -24.37631 -23.46648 -22.43802 -22.16236 -20.79836 -20.23218 -19.38979 -18.30071 -17.90671 -16.86550 -16.52691 -16.43451 -16.05963 -15.55659 -15.37750 -14.89856 -14.79006 -14.53560 -14.39252 -13.97160 -13.83492 -13.65332 -13.39085 -13.13990 -13.05318 -12.76776 -12.56727 -11.94560 -11.79969 -11.65209 -11.29103 -11.09169 -10.80133 -10.62127 -10.42087 -10.38088 -10.22836 -9.90054 -9.82938 -9.73583 -9.65846 -9.04442 -8.53681 -7.99036 -6.78979 -5.87240 -3.31136 0.41342 0.85787 2.22153 2.62945 2.67819 2.89695 3.32367 3.38820 3.39495 3.45340 4.00427 4.22739 4.32030 4.41569 4.58036 4.70170 4.72713 5.04695 5.07520 5.19651 5.25430 5.31536 5.44157 5.45541 5.60413 5.84867 5.88245 5.96341 6.08149 6.16443 6.24577 6.32813 6.40941 6.50408 6.61210 6.64659 6.78770 6.83833 7.18273 7.26975 7.57436 7.70782 7.76154 7.82686 8.35837 9.11615 9.74513 10.30592 11.21485 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026897 B = 0.002410 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.742636 B =11613.494339 C =11909.011856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.288 6.288 3 C -0.033 4.033 4 C 0.028 3.972 5 N -0.564 5.564 6 H 0.419 0.581 7 C 0.126 3.874 8 C 0.553 3.447 9 O -0.498 6.498 10 N -0.716 5.716 11 C 0.149 3.851 12 C -0.140 4.140 13 C 0.148 3.852 14 N -0.592 5.592 15 C -0.259 4.259 16 H 0.066 0.934 17 C 0.005 3.995 18 N -0.900 5.900 19 Si 0.904 3.096 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.173 3.827 24 C -0.148 4.148 25 C -0.212 4.212 26 C 0.400 3.600 27 O -0.496 6.496 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.170 0.830 32 H 0.389 0.611 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.022 0.978 38 H 0.256 0.744 39 H 0.023 0.977 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.282 -16.417 5.756 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.200 6.200 3 C -0.084 4.084 4 C -0.099 4.099 5 N -0.178 5.178 6 H 0.256 0.744 7 C 0.014 3.986 8 C 0.336 3.664 9 O -0.371 6.371 10 N -0.367 5.367 11 C 0.047 3.953 12 C -0.180 4.180 13 C 0.021 3.979 14 N -0.315 5.315 15 C -0.388 4.388 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.544 5.544 19 Si 0.733 3.267 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.047 3.953 24 C -0.188 4.188 25 C -0.239 4.239 26 C 0.290 3.710 27 O -0.379 6.379 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.187 0.813 32 H 0.223 0.777 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.781 -17.003 5.644 22.007 hybrid contribution -1.557 1.169 -0.657 2.055 sum -14.338 -15.834 4.987 21.935 Atomic orbital electron populations 1.23141 0.79115 1.04570 1.00934 1.86289 1.20364 1.24291 1.89025 1.20438 0.94828 0.84685 1.08479 1.21629 0.98754 0.84137 1.05401 1.40692 1.05125 1.08440 1.63528 0.74369 1.20529 0.82739 0.96011 0.99317 1.17919 0.87328 0.82866 0.78331 1.90887 1.12807 1.85558 1.47860 1.46354 1.09302 1.06942 1.74120 1.21240 0.96962 0.78246 0.98858 1.22369 0.98710 0.97637 0.99237 1.20829 0.96528 0.92076 0.88479 1.44088 1.58088 1.18545 1.10740 1.19107 1.00941 0.99135 1.19660 0.91661 1.25077 0.94668 0.98190 1.01527 1.70013 1.03811 1.44703 1.35840 0.86363 0.78002 0.81531 0.80793 1.20830 1.21567 1.21034 1.20770 0.90797 0.84115 0.99656 1.22600 1.01228 1.00784 0.94222 1.22508 1.02463 0.90345 1.08619 1.16815 0.86119 0.89832 0.78270 1.90861 1.65724 1.37541 1.43807 0.92696 0.87868 0.92732 0.81314 0.77715 0.89300 0.92435 0.91743 0.92177 0.96038 0.93390 0.95926 0.89098 0.92565 0.92502 0.81235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.09 10.33 -35.61 -0.37 -3.46 16 3 C -0.03 -0.35 6.71 -39.17 -0.26 -0.61 16 4 C 0.03 0.17 10.22 -16.81 -0.17 0.00 16 5 N -0.56 -3.48 5.26 -9.58 -0.05 -3.53 16 6 H 0.42 1.19 7.00 -40.82 -0.29 0.90 16 7 C 0.13 1.28 6.77 -82.53 -0.56 0.72 16 8 C 0.55 6.87 7.77 -12.23 -0.09 6.77 16 9 O -0.50 -8.33 15.93 5.35 0.09 -8.25 16 10 N -0.72 -7.70 5.07 -54.64 -0.28 -7.97 16 11 C 0.15 2.20 2.42 -67.89 -0.16 2.04 16 12 C -0.14 -1.95 5.55 -26.61 -0.15 -2.10 16 13 C 0.15 2.77 6.51 -3.71 -0.02 2.74 16 14 N -0.59 -13.81 3.00 -172.30 -0.52 -14.33 16 15 C -0.26 -6.72 9.58 -15.06 -0.14 -6.87 16 16 H 0.07 1.65 7.88 -52.49 -0.41 1.23 16 17 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 18 N -0.90 -25.42 11.20 55.49 0.62 -24.79 16 19 Si 0.90 20.88 29.59 -169.99 -5.03 15.86 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.17 3.93 5.30 -3.70 -0.02 3.91 16 24 C -0.15 -2.63 5.65 -26.61 -0.15 -2.78 16 25 C -0.21 -2.66 9.53 -39.03 -0.37 -3.03 16 26 C 0.40 5.61 6.78 -37.02 -0.25 5.36 16 27 O -0.50 -8.96 17.71 -11.15 -0.20 -9.16 16 28 H 0.05 0.18 7.66 -51.93 -0.40 -0.22 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.17 7.66 -51.93 -0.40 -0.23 16 31 H 0.17 0.38 6.21 -52.49 -0.33 0.06 16 32 H 0.39 2.64 6.81 -40.82 -0.28 2.36 16 33 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.09 7.93 -51.93 -0.41 0.67 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.17 2.26 7.57 -52.49 -0.40 1.86 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -35.60 354.61 -7.55 -43.15 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.71 Total: -0.13 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -1.46 Total: 7.27 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.22 Total: -50.63 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.48 Total: -20.86 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.60 -7.55 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003313300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.896 kcal (2) G-P(sol) polarization free energy of solvation -35.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds