Wall clock time and date at job start Tue Mar 31 2020 13:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.36014 * 116.99766 * 2 1 4 4 C 1.35851 * 120.31373 * 359.97438 * 3 2 1 5 5 N 1.35447 * 120.77232 * 180.02562 * 4 3 2 6 6 H 0.97004 * 119.28746 * 179.97438 * 5 4 3 7 7 C 1.36424 * 121.41272 * 359.97438 * 5 4 3 8 8 C 1.48072 * 119.72010 * 179.97438 * 7 5 4 9 9 O 1.21512 * 119.99767 * 179.97438 * 8 7 5 10 10 N 1.34777 * 119.99838 * 0.02562 * 8 7 5 11 11 C 1.46495 * 120.00118 * 179.97438 * 10 8 7 12 12 C 1.53039 * 109.46476 * 204.99626 * 11 10 8 13 13 C 1.53192 * 109.31624 * 178.61195 * 12 11 10 14 14 N 1.46925 * 108.89163 * 54.56131 * 13 12 11 15 15 C 1.36940 * 120.62821 * 126.46045 * 14 13 12 16 16 H 1.08000 * 119.99751 * 331.92858 * 15 14 13 17 17 C 1.38810 * 120.00078 * 151.92771 * 15 14 13 18 18 N 1.31619 * 119.99689 * 343.17980 * 17 15 14 19 19 Si 1.86795 * 119.99988 * 163.18147 * 17 15 14 20 20 H 1.48509 * 109.47304 * 59.99932 * 19 17 15 21 21 H 1.48501 * 109.47440 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47535 * 299.99868 * 19 17 15 23 23 C 1.46954 * 118.71946 * 306.64559 * 14 13 12 24 24 C 1.53044 * 109.46278 * 84.92375 * 11 10 8 25 25 C 1.36182 * 120.56210 * 0.25290 * 7 5 4 26 26 C 1.41576 * 120.31033 * 180.02562 * 3 2 1 27 27 O 1.22257 * 120.65478 * 0.02562 * 26 3 2 28 28 H 1.08995 * 109.46924 * 59.99989 * 1 2 3 29 29 H 1.08999 * 109.46965 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47157 * 300.00129 * 1 2 3 31 31 H 1.07996 * 119.61392 * 0.02562 * 4 3 2 32 32 H 0.96996 * 119.99854 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.44555 * 324.96623 * 11 10 8 34 34 H 1.09005 * 109.49298 * 58.66180 * 12 11 10 35 35 H 1.08998 * 109.49763 * 298.56780 * 12 11 10 36 36 H 1.08997 * 109.58838 * 174.42439 * 13 12 11 37 37 H 1.09002 * 109.58672 * 294.71002 * 13 12 11 38 38 H 0.97000 * 119.99637 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47125 * 293.56762 * 23 14 13 40 40 H 1.09000 * 109.71403 * 173.28134 * 23 14 13 41 41 H 1.09000 * 109.50000 * 301.34377 * 24 11 10 42 42 H 1.09003 * 109.49095 * 61.43586 * 24 11 10 43 43 H 1.07995 * 120.40391 * 179.71875 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3553 -0.0005 5 7 1.9180 3.5670 -0.0010 6 1 1.3732 4.3696 -0.0018 7 6 3.2773 3.6829 -0.0006 8 6 3.8995 5.0266 -0.0017 9 8 5.1097 5.1357 -0.0008 10 7 3.1235 6.1285 -0.0028 11 6 3.7390 7.4579 -0.0034 12 6 2.7662 8.4705 0.6053 13 6 3.4263 9.8526 0.6348 14 7 3.8805 10.1919 -0.7206 15 6 3.5028 11.3696 -1.3087 16 1 2.5675 11.8346 -1.0341 17 6 4.3220 11.9656 -2.2576 18 7 5.5834 11.6035 -2.3586 19 14 3.6343 13.2815 -3.3910 20 1 3.1356 14.4217 -2.5805 21 1 4.7039 13.7555 -4.3056 22 1 2.5167 12.7143 -4.1875 23 6 4.7444 9.2414 -1.4345 24 6 4.0697 7.8661 -1.4408 25 6 4.0669 2.5734 -0.0047 26 6 3.4599 1.2937 -0.0005 27 8 4.1430 0.2798 -0.0015 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2344 2.2973 -0.0005 32 1 2.1575 6.0413 -0.0031 33 1 4.6549 7.4340 0.5871 34 1 2.5130 8.1665 1.6210 35 1 1.8600 8.5129 0.0012 36 1 2.7044 10.5951 0.9749 37 1 4.2798 9.8356 1.3126 38 1 6.1559 12.0203 -3.0215 39 1 5.7070 9.1738 -0.9275 40 1 4.8945 9.5794 -2.4598 41 1 4.7441 7.1319 -1.8815 42 1 3.1511 7.9141 -2.0257 43 1 5.1427 2.6681 -0.0088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003313300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:03 Heat of formation + Delta-G solvation = -69.281309 kcal Electronic energy + Delta-G solvation = -26756.981299 eV Core-core repulsion = 22803.060921 eV Total energy + Delta-G solvation = -3953.920378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.56867 -41.04587 -39.35039 -38.87525 -38.73684 -36.23459 -34.07081 -32.78197 -32.20425 -31.62229 -31.00076 -28.44103 -27.17586 -25.61851 -24.26494 -23.93343 -23.56546 -21.89785 -21.33897 -20.53364 -19.24533 -18.88215 -18.46839 -17.37316 -17.25489 -17.13650 -16.80246 -16.34870 -16.32623 -15.69269 -15.54891 -15.35462 -15.33469 -15.21043 -14.83552 -14.67068 -14.44927 -14.13879 -14.09383 -13.82564 -13.19852 -13.01154 -12.69098 -12.55553 -12.38641 -12.26087 -12.15021 -12.09942 -11.87446 -11.63101 -11.56878 -11.27629 -10.73965 -10.60540 -10.54316 -10.18994 -8.79605 -8.70040 -7.86843 -5.32869 -0.54238 0.12389 1.43147 1.49152 1.50899 1.57780 1.61601 1.70772 2.31128 2.52549 2.54420 3.27198 3.32589 3.53263 3.64742 3.68395 3.79325 3.87197 4.04277 4.30419 4.34813 4.42515 4.48166 4.48991 4.57882 4.66475 4.73932 4.82805 4.84414 5.01339 5.03516 5.06859 5.13911 5.30348 5.34337 5.40499 5.48087 5.65750 5.72094 5.78896 6.24340 6.29900 6.39651 6.86712 6.89819 7.14774 7.86214 8.37677 9.20031 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026897 B = 0.002410 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.742636 B =11613.494339 C =11909.011856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.325 6.325 3 C -0.062 4.062 4 C 0.077 3.923 5 N -0.530 5.530 6 H 0.444 0.556 7 C 0.150 3.850 8 C 0.558 3.442 9 O -0.544 6.544 10 N -0.692 5.692 11 C 0.160 3.840 12 C -0.121 4.121 13 C 0.138 3.862 14 N -0.609 5.609 15 C -0.260 4.260 16 H 0.075 0.925 17 C -0.055 4.055 18 N -0.939 5.939 19 Si 0.967 3.033 20 H -0.274 1.274 21 H -0.301 1.301 22 H -0.275 1.275 23 C 0.180 3.820 24 C -0.133 4.133 25 C -0.235 4.235 26 C 0.377 3.623 27 O -0.570 6.570 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.230 0.770 32 H 0.416 0.584 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.010 0.990 38 H 0.248 0.752 39 H -0.012 1.012 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.635 -15.993 6.526 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.238 6.238 3 C -0.112 4.112 4 C -0.052 4.052 5 N -0.144 5.144 6 H 0.286 0.714 7 C 0.035 3.965 8 C 0.342 3.658 9 O -0.420 6.420 10 N -0.344 5.344 11 C 0.056 3.944 12 C -0.161 4.161 13 C 0.013 3.987 14 N -0.333 5.333 15 C -0.390 4.390 16 H 0.093 0.907 17 C -0.250 4.250 18 N -0.585 5.585 19 Si 0.795 3.205 20 H -0.200 1.200 21 H -0.227 1.227 22 H -0.201 1.201 23 C 0.053 3.947 24 C -0.173 4.173 25 C -0.262 4.262 26 C 0.273 3.727 27 O -0.460 6.460 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.098 0.902 31 H 0.246 0.754 32 H 0.254 0.746 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.028 0.972 38 H 0.057 0.943 39 H 0.006 0.994 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.264 -16.537 6.444 25.467 hybrid contribution -0.001 1.135 -0.832 1.407 sum -18.266 -15.402 5.612 24.543 Atomic orbital electron populations 1.23522 0.76164 1.06061 1.03144 1.86245 1.23468 1.24609 1.89495 1.20138 0.93499 0.86472 1.11074 1.22308 1.00673 0.82124 1.00095 1.40822 1.03706 1.09967 1.59891 0.71398 1.19938 0.84195 0.93733 0.98627 1.18090 0.86750 0.83660 0.77326 1.90892 1.15198 1.86203 1.49736 1.45870 1.10514 1.04894 1.73164 1.20837 0.97028 0.80269 0.96231 1.22164 0.98084 0.93830 1.01989 1.21065 0.96585 0.95334 0.85749 1.44347 1.58046 1.18121 1.12781 1.19524 1.00873 0.99502 1.19070 0.90701 1.25860 0.94897 1.00757 1.03462 1.70193 1.05181 1.46459 1.36663 0.85350 0.77033 0.79309 0.78799 1.19951 1.22749 1.20080 1.20479 0.90258 0.86875 0.97066 1.22332 1.00905 0.97304 0.96792 1.22279 1.02028 0.91102 1.10787 1.17297 0.88147 0.89296 0.77927 1.90812 1.67333 1.39199 1.48698 0.90369 0.87218 0.90208 0.75404 0.74568 0.91632 0.88329 0.89770 0.91308 0.97154 0.94260 0.99360 0.92783 0.93354 0.91240 0.83587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.81 113.37 1.11 1.14 16 2 O -0.32 -6.53 10.33 -78.58 -0.81 -7.34 16 3 C -0.06 -1.20 6.71 22.54 0.15 -1.05 16 4 C 0.08 0.55 10.22 83.58 0.85 1.40 16 5 N -0.53 -3.62 5.26 -184.21 -0.97 -4.59 16 6 H 0.44 -0.90 7.00 -92.71 -0.65 -1.54 16 7 C 0.15 2.67 6.77 40.56 0.27 2.95 16 8 C 0.56 12.65 7.77 86.85 0.67 13.33 16 9 O -0.54 -18.34 15.93 -3.75 -0.06 -18.40 16 10 N -0.69 -11.97 5.07 -445.08 -2.26 -14.23 16 11 C 0.16 4.31 2.42 45.02 0.11 4.42 16 12 C -0.12 -2.85 5.55 30.67 0.17 -2.68 16 13 C 0.14 4.88 6.51 86.36 0.56 5.44 16 14 N -0.61 -28.22 3.00 -699.03 -2.10 -30.32 16 15 C -0.26 -13.34 9.58 84.03 0.81 -12.53 16 16 H 0.08 3.64 7.88 -2.91 -0.02 3.62 16 17 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 18 N -0.94 -55.03 11.20 21.65 0.24 -54.79 16 19 Si 0.97 43.14 29.59 68.60 2.03 45.17 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 21 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.18 8.40 5.30 86.36 0.46 8.86 16 24 C -0.13 -4.60 5.65 30.67 0.17 -4.43 16 25 C -0.23 -6.07 9.53 22.63 0.22 -5.85 16 26 C 0.38 11.09 6.78 23.93 0.16 11.25 16 27 O -0.57 -22.71 17.71 8.98 0.16 -22.55 16 28 H 0.08 0.09 7.66 -2.39 -0.02 0.07 16 29 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.06 7.66 -2.39 -0.02 0.04 16 31 H 0.23 -0.93 6.21 -2.91 -0.02 -0.95 16 32 H 0.42 2.87 6.81 -92.71 -0.63 2.24 16 33 H 0.07 2.15 7.58 -2.38 -0.02 2.13 16 34 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 2.29 7.93 -2.39 -0.02 2.27 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.05 2.91 6.07 -2.39 -0.01 2.89 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.15 4.37 7.57 -2.91 -0.02 4.35 16 Total: -1.00 -88.56 354.61 2.16 -86.40 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -0.22 Total: 0.93 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 6.14 Total: 19.71 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -5.08 Total: -103.92 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -0.71 Total: -48.29 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -88.56 2.16 -86.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003313300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.117 kcal (2) G-P(sol) polarization free energy of solvation -88.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds